RNA id: XM_021562567.2


Basic Information

Item Value
RNA id XM_021562567.2
length 3650
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110489732
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18373431 ~ 18384106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGTAGGCGGAGCCTCGAAGATTGGGCCCTCACTTTCCGGAAGTATCCTCCTTTGCGCCTTATGGAAGTGACGTTAAGCTGTCAACATGTAAGATGGCGACTCTTCACAGGCAAAATGCTGCTGGGCGGAGAAAAGTCCAGGTGTCCTATGTGATTCGGGATGAGGTGGAGAAGTATAACCGCAATGGGGTGAATGCTCTGCAGCTCGACCCGGCCTTGAACCGCCTCTTCACGGCTGGCCGAGACTCCATTATTAGGATATGGAGCGTCAACCAGCACAAGCAGGACCCGTACATTGCATCGATGGAACACCACACAGATTGGGTCAATGACATCGTCCTCTGTTGCAATGGGAAGACATTGATATCTGCTTCCTCAGACACCACAGTGAAAGTCTGGAATGCACATAAGGGATTCTGCATGTCCACATTGCGAACACATAAGGACTATGTCAAAGCCTTAGCCTATGCCAAGGACAAGGAACTGGTGGCCTCAGCAGGGCTGGACAGACAGATCTTTCTATGGGACGTTAACACACTAACGGCACTGACCGCCTCCAATAATACTGTCACCACCTCTTCACTGAGTGGGAACAAAGACTCCATCTACAGTCTGGCTATGAATCAGATGGGCACCGTCATTGTGTCAGGGTCCACTGAAAAGGTGCTGAGAGTTTGGGATCCTCGAACCTGTGCCAAGCTGATGAAGTTGAAAGGTCACACAGACAACGTTAAATCATTACTGCTAAACAGGGATGGCACTCAGTGTCTCTCGGGCAGCTCAGACGGGACCATCCGTCTGTGGTCGCTGGGGCAGCAGCGGTGCATTGCTACCTACCGGGTGCACGATGAGGGCGTGTGGGCCCTGCAGGTCAACGAAGCCTTCACGCATGTCTACTCCGGCGGACGCGACCGCAAGATCTACTGCACCGACCTGAGGAATCCAGACCTCCGCGTTCTCATCTGCGAGGAGAAAGCCCCTGTCCTCAAGATGGAGCTGGACCGCTCGGCAGACCCCCCCACGGCCCTCTGGGTCTCCACCACCAAGTCCACCGTCAACAAATGGTCTCTGAAGGGCATTCATAATTTCCGAGCATCTGGCGATTACGACAACGACTGCACTGCTCCCCTGACGCCTCTCTGTACTCAACCCGAGCAGGTTGTTACAGGGGGAGCCAGCATTATCCAGTGCCACATTCTGAACGACAAGAGACACATACTAACCAAAgacaccaacaacaacattgcATACTGGGATGTTttaaagGCGTGTAAAGGGGAAGACCTGGGAAAGATGGAGTTTGACGAAGAGATTAAAAAGAGGTTCAAAATGGTTTATGTGCCAAACTGGTTCTCAGTGGATCTTAAAACTGGGATGTTGACCATCACGCTGGATGAGAGCGACTGCTTTGCTGCATGGGTGTCAGCCAAGGATGCAGGCTTCTCCAGTCCTGATGGGTCTGACCCCAAGTTGAACCTGGGTGGACTGCTGCTGCAGGCCTTACTGGAGTATTGGCCCCGAACCCACATCAACCCCATGGATGAAGAGACAGAGATGAACCACAtgaacGGGGAGCATGAGAGCAGGATACAGAAAGGTAACGGCTACTTCCATGTTCCCCCTCACACGCCAGTCATCTTtggagaggcagggggaaggaCCTTGTTCAGgttgttGTGTCGAGACTCCGGTGGTGAGACTGAGTCCATGTTGCTCAACGAGACCGTGCCACAGTGGGTCATCGACATCACTGTGGATAAAAACATGCCCAAATTCAACAAAATCCCCTTCTACCTCCAGCCTCATTCTTCTTCTGGTGCAAAAACCTTAAAGAAGGACCGCCTGTCGGCCAGTGACATGCTCCAGGTGAGGAAGGTGATGGAGCACGTGTACGAGAAGATCATCAACCTGGACAACGAGTCTCAGACGGGGGCCTCGGCAAACAACGACAAGCCCAGTgagcagaaggaggaggaggacgtgGCCGTGCTGGCCGAGGAGAAGATTGAGCTGCTCTGTCAGGACCAGGTATTGGATCCCAACATGGACCTGCGGACCGTCAAGCATTTTATCTGGAAGAGCGGTGGAGACCTAACCCTTCACTACCGGCAGAAGTCCACGTGAGGTCGCCGGTGTCTGCGAAGAAGGCTCATCTTCTGCTAGCctgccctcctcttcctcctcctttcttcTTCCTCTGGCACCAAACTTGGACTTTTCAACTCATCCCACCAGATCCATGTGTTAGTAACACAAACCTGTGCTCAACGACTCCTTATGAGATCTTATAAGAGGTCACAACACCTTAATAACCCCTCAAAAAGGTCCGTAGCCTGAGCGTCACACAAAATCACCGTTCTACACCCAGCCATGTAGAGAGGCGTGAGAACACGCAAGGAGAATGGCGAGAAACAATTGTTGCTGTGTACAGTGAATGGACTGAGGAATATTCCAGGGCATTTTAAGGTTTTTGTCATTTAGGTTTATTTTTATTCAATGTCTTTGTCTCCTTTTGTTTATCCCCCCTTATTTGTAAGAAATATGTTTTATTGCCATGCCCATCTTCAGAGAGCGAAGGCGCCCTTCCATCTTGAGAAAGTCGCTATGCTTGGGGGTTCACTTTGTGACCTGATTGGTAGACTGCACACGtttcttttctttcttctttTATTCTCTCCCCCTATACATTCCAGGAACACGCTTGGTTTCCAACCACCTATCACTACCCTTCATCCTAATCCATGTTTAGGACACAGTTCAATGAGGAAGATTTTCTGGATTGTCAGGCGACCAATCAAGGACTTGACAGAATGTAAAGACGTGACTATAGTATGCATGTGTGATATCCTTCAGTTTCCTCAGTTTGGCAACTGACTGATGTATTGAAGGCGGCTGTGTGAAGTTTTTCTCTCACCAAATGGACACAGACAAGGACACATCCCCCAAACTGAATCTCATTAGCTAACGAACGCTGATATTAAATTACTGACCCTATCTTTCTTTTTGTAAATAGACTGTCATTATTTTGTAGGCAACTTGACACAAGTTGTACACCTCATCaggaacatttttttttctttttttctcgaGAACCCTGTGTTATTTTCAAAAGGTTGCTTTCTCATGTTAATAAAAAGAGGAAAGAAAAACCACACGTGTCAAGAAGCAACGGATATGTACGACTAAAGGATCTCACCCACGGAATCAGGATGtttataggctactgtactgtatttgagAGGAAAGCTACATTTGTTGTCATTGGCATTACCCTTGACAGTCTGCAGCTAAATCTACTTGAAATACAATGAGGAAGGTCTAGGGGGAGATATTCTGGAGGGAATcacaactttttattttatttatgcaaACAAAATGAAGACTGTGCTCTACAACTCTAAATGGATTACTCCAACAATGTGAATTGCACAGTGCtatagcaaatgtataaaaataaatcatTTATTTGATTTTAGTTGAAAGATAAGCTTTGTCTGAAAAAGCTCTACATGAAAAAAAAGCTCCTACAGAATTATATGCTTCCATATCCACAACCCATGTGCTCCCACGTGTTGATGTAATTAAATGTAGTATATTTTGGGTAAATAAGTGCTTAATAAATTAACCAACATGACAACGAGAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445643 lncRNA downstream 92180 18280730 ~ 18281251 (-) True G1265310
TU1445600 lncRNA downstream 160590 18212520 ~ 18212841 (-) True G1265271
TU1445599 lncRNA downstream 161690 18211509 ~ 18211741 (-) True G1265270
TU1445588 lncRNA downstream 177701 18195501 ~ 18195730 (-) True G1265260
TU1445233 lncRNA downstream 205915 18167310 ~ 18167516 (-) True G1264941
TU1445708 lncRNA upstream 50877 18434983 ~ 18436635 (-) True G1265371
TU1445792 lncRNA upstream 187839 18571945 ~ 18572166 (-) True G1265452
TU1445793 lncRNA upstream 189444 18573550 ~ 18574311 (-) True G1265453
TU1445794 lncRNA upstream 190561 18574667 ~ 18574949 (-) True G1265454
TU1445808 lncRNA upstream 282960 18667066 ~ 18683212 (-) True G1265464
XM_036943925.1 mRNA downstream 4197 18344424 ~ 18369234 (-) True unm_hu7910
XM_036943928.1 mRNA downstream 4199 18344424 ~ 18369232 (-) False unm_hu7910
XM_036943937.1 mRNA downstream 4199 18344424 ~ 18369232 (-) False unm_hu7910
XM_036943932.1 mRNA downstream 4203 18344424 ~ 18369228 (-) False unm_hu7910
XM_036943935.1 mRNA downstream 4204 18344424 ~ 18369227 (-) False unm_hu7910
XM_021562575.2 mRNA upstream 208890 18592996 ~ 18607504 (-) True LOC110489734
NM_001190941.1 mRNA upstream 234564 18618670 ~ 18680053 (-) True actriib
XM_036943979.1 mRNA upstream 402764 18786870 ~ 18848976 (-) False xylb
XM_036943978.1 mRNA upstream 402764 18786870 ~ 18849057 (-) False xylb
XR_005036057.1 mRNA upstream 402764 18786870 ~ 18849057 (-) False xylb
TU1445577 other downstream 189308 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 910454 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1727014 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 2096879 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2338309 15989286 ~ 16035122 (-) True LOC110490929
TU1445798 other upstream 192433 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 192612 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 192612 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 724453 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 1050912 19435018 ~ 19453770 (-) True G1266708

Expression Profile