RNA id: XR_005036057.1


Basic Information

Item Value
RNA id XR_005036057.1
length 2278
RNA type mRNA
GC content 0.48
exon number 20
gene id xylb
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18786870 ~ 18849057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCGCTGCACCTTTAAACATGAACCCTGTGTGCACTGTTCAGTAACAGCGATACTGTGCTGCACTTCCAGTTTTGGGACCTAGAATTATGTGTTGACTGCAATGGCTGCGTCCACCGAGTCATTTTACCTGGGGTTTGATTTCAGCACTCAACAACTGAAGGTGGTTGCTGTTGATGGGAACCTAAGTGTTGTCCACCAGGACAATGTGCAGTTTGACAGTGAACTGCCAGAATTCGGGACTCAGGGAGGGGTCCATATCCATGCAGACAGTCTGACTGTCACTTCTCCTGTGCTCATGTGGGTAAAGGCACTTGACCTGATCCTTGGCAAGATGAAGAATGCAGGATTTGACTTCTCGCGTGTGAAAGCCCTATCTGGGAGTGGCCAGCAACATGGCAGTGTGTATTGGAGGAAAGGGACCAACCAAGTTCTCAGGGATCTCCAGCCAGGAAAAAGTTTGCATGAACTTCTGAAGGGTGGTTTTGCAGTGTCAGATAGTCCAGTGTGGATGGACTCCAGCACTACAGAGCAGTGTCAGTACCTGGAGACAGCAGTAGGTGGCGCTCAGAGAGTTGCAGACATCACGGGCTCCCGGGCCTATGAGCGTTTCACTGGAAATCAGATTGCCAAGATTTACAAGGCCCAACCAGAGAAGTACGAGGACACAGAGAGAATCTCATTGGTCAGCAGCTttgctgcctctctcttcctGGGCAGCTATGCAGCTATTGATTACAGTGACGGTTCAGGGATGAATTTGATGGACATTTTCAGCAAACAGTGGGCAGACTCCTGTCTTGAGGCTACTGCTCCTCACCTGGAGGAGAGGCTGGGAGCCCCTGTGCATTCTTCAGCTGTCTTGGGCCTCCTCTCTCCTTACCATGTCACTCGTTATGGCTTCCCAGAGGACTGCAAGGTGGTGGCATTCACTGGGGATAACCCAGGGTCCCTGGCTGGGATGAGGTTACAGGAAGGAGACATAGCCGTGAGTCTTGGCACTAGCGACACAGTCTTCCTGTGGATCAAAGAGCCGAGGCCCACAGTGGAAGGACACATCTTCTGCAACCCAGTGGACCGGCCCTCCTATATGGCTTTGATATGCTATAAGAATGGCTccctgaccagagagaggatcaGAAACAAGTGTGCTGGAGGGTCATGGGAAGTCTTCTCCTCGGTCCTGAGGACTACACCAATAGGGAACTACGGGAACATAGGGATTTATTTTGATGCCATGGAAATCACACCGTCTGCAGTCGGAGTTCACAGATTTGACAAAGAAAATACGAAGGTAGCCGGCTTCTCCGCCCAGGGGGAAATCCGAGCCCTGGTTGAGGGACAGTTCCTGGCAAAGAGGGTCCACGCCGAAAAGCTGGGTTATAAGATCATTCCAGGAACTCGAGTGCTGGCCACCGGAGGGGCTTCTTCTAACAAGGACATTCTGCAGGTGCTATCTGACGTGTTCGATGCTCCCGTGTACACCATTGACGTGGCCAACTCTGCCTGTCTAGGCTGTGGCTACAGGGCCCTGCAGGgtgactacctcatgaagctggttgagagaatgtcgagagcgtgcaaagctgtcaaggcaaagGACTTGTTGCTGAATCAGGAGTGTCCTTCGCTGAGGCGGTGAAAAAAGCCCCAGAAGCCCAGCTAGCAGTGACCCCAACAcctggagctgacaagGTGTTTGCTCCCCTGTTGAGGCGTTACGCTGAGCTGGAGGAGAGAGTGCTCCAGGAATCAAAGCAGTGACTGAACACTGGCAATTATTTCAATCAGCACATTTCTCCATGGTCTGATGAGCAAATAAGAAGGACTTGCAAACCTGTGCCTTACACGTAATTCCAACCTCTTTAGTTTGACTTTGTAAAACAccttaaatattatttttttacaggTAATTTTTCATGAATGTATCTGCAAGTGACACAACCCTCTTCAATTTGTTTAGTTGTGATGATACTAAGAATACCTCATTTTCTTTGCATTCTTCGCTTCTGTCTGGTTGCTGAATACACAATTAATCTCTGTTGTCATGCCATGATCATTTCAATGGGCATTTAGATAGTCAAACAAGTATTTTTGGAAGTATGAAAGTTCCATAAGGGAATTGTCTTCTCACTCAGAAATAAACTGAAAAATGTTGTTCTCATGGGAATTCTGAAAGATCTACAGTATTATGAGTATTCTGAATCTTCATTTATCTACTGTGCTGATGCCCTCGAATTTCTTCAAACAATAAAATCTATTGAACTTTTCATGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445892 lncRNA downstream 51234 18735271 ~ 18735636 (-) True G1265547
TU1445808 lncRNA downstream 103658 18667066 ~ 18683212 (-) True G1265464
TU1445794 lncRNA downstream 211921 18574667 ~ 18574949 (-) True G1265454
TU1445793 lncRNA downstream 212559 18573550 ~ 18574311 (-) True G1265453
TU1445792 lncRNA downstream 214704 18571945 ~ 18572166 (-) True G1265452
TU1446801 lncRNA upstream 1543 18850600 ~ 18850889 (-) True G1266320
TU1446806 lncRNA upstream 10669 18859726 ~ 18860266 (-) True G1266325
TU1446845 lncRNA upstream 69746 18918803 ~ 18919391 (-) False LOC110490935
TU1446846 lncRNA upstream 69856 18918913 ~ 18919391 (-) False LOC110490935
TU1446844 lncRNA upstream 69883 18918940 ~ 18919391 (-) True LOC110490935
NM_001190941.1 mRNA downstream 106817 18618670 ~ 18680053 (-) True actriib
XM_021562575.2 mRNA downstream 179366 18592996 ~ 18607504 (-) True LOC110489734
XM_021562566.2 mRNA downstream 402764 18373431 ~ 18384106 (-) False LOC110489732
XM_021562584.2 mRNA upstream 22169 18871226 ~ 18874224 (-) True crygn2
XM_021562585.2 mRNA upstream 33749 18882806 ~ 18916856 (-) False LOC110489739
XM_021562586.2 mRNA upstream 33749 18882806 ~ 18916856 (-) False LOC110489739
XM_021562587.2 mRNA upstream 33749 18882806 ~ 18916856 (-) True LOC110489739
XM_036943993.1 mRNA upstream 69728 18918785 ~ 19220902 (-) False LOC110490935
TU1445798 other downstream 206707 18576539 ~ 18580163 (-) False G1265456
TU1445799 other downstream 206707 18576718 ~ 18580163 (-) True G1265456
TU1445796 other downstream 207079 18576718 ~ 18579791 (-) False G1265456
TU1445577 other downstream 602747 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 1323893 17461828 ~ 17462977 (-) True G1264199
TU1446969 other upstream 259502 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 585961 19435018 ~ 19453770 (-) True G1266708
TU1448004 other upstream 1418909 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 1441293 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 2109315 20958372 ~ 20960089 (-) True G1268555

Expression Profile