RNA id: XM_021562578.2


Basic Information

Item Value
RNA id XM_021562578.2
length 2722
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110489737
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18859697 ~ 18866106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCGCCGAGGAGTGATGCCAATATATTGGAGCGAgccaatatagtgaaacataaccACTTTCCAGAAGTTCTCTGTGTTTTTAGAGCGATGACAAATTGGCCCACGTGACTTATCCTAGTGTGAAAGAGAAGATAAACAACATTCTCGGCTCAGAAATGTTCCTATCAGAACAATACGGCGACAATGTTAACAACACTTCAAACAATGGCGGAGCTAAATATTCAGGAAAAGCTGGTAAATCTTTTAAATCAAGGTAATATTCAGCTCAGGAATCCACCTTACACAACAGAGGACAGCGAGGCAGGACAGCAATCTCTTCAGGAGCTTGCAGTGAACTATGCCCCCATTGTGTGCATCTCTGTGTCTGAAGTGGCCAGTGCCTTGGAGAGCCTCCGATCCCAGGCAGTAAAGAGTGGAATGGGGAACAAGACCTACGGAGAGACATGTGTGGAACTCTTTCTGCCTAAAGACTTGAAAAAGTATACCAAGAAGAATAACTATTTGGAGACAAAACTGGATGTCCTTGCTCAAGATATCATGGATAGGATTACTGAACAATATGGACTTAAATACATCCAGTTAATTTTTAAAGGGAAGACACTGACTCCTGAGAAGCGTCTGGATGAACAGAATGTGAAGAACAAAAGTAAGATGATGGTTCTGCGGGTGAGCGTGCCAGAGAGCAAGAAACAGAtgttggaggtggaggaggagaagaaaacgCATGACCAGAGTGTCCAGAGAACCCAGAGGGGCTTCCAGATCCTATCAGAGAGAGATGGCACCGATGATCCAGCCACGACTCCATTCCTAGAGATTGCTGATCAGAAGGGGAACCCCCTGAAAATACCTCACAGTAAAAAAAAGGCTCTGATTTTAGCCATGGGGTTCCATGAGAAAGGCCGTGCTCTGATGAAGAGGAAACAGTATGAAACTGCTCTGGGCCACCTGGTGCAAGCTGACGACCagtttgtTAAGTGTGGCTCCAAGCTCTTGAACACAGTGGACAACTATGCAGTACTGCAGCTGGACATCGTGTGGTGCTACCGAGCCTTGGAGGCCCTGTCCTATCTGGATGATGGCAAGCGGAGGCTGCAGATTGCCGAGGACTGCTTCCACAATTGCTACGGAGACCAGCATCAGAGGCTCATGAAGATCAAGGGAAacaccagaggagaggaggtgctGTTCCTCAGGCTGTACCTCCTGCAGAGCATACTGGCGCACATGGTTGGTAACGAGCGCCAGGCCACACAGAAGCTTAAGCAGGCTGAGGATCTCTATGAGCGTCTGTGTGTGGACCCAGGGGAGATAAAAGTGCTGAAGGATCTGGGGTTCTCTGAACAGGAAGCCCGTCTGGGTCTGAGGGCCTGCCATGGCAACGTAGGCGAGGCCACGCTGCACATCACCCATAGGAGACAGgagagggaggagatgaaacagaaggagagtgagaagaggaggatgtgtgTGGAGGGACTGGCTACCCTCAGAGCGCTGGGTTACTCCAAGAAAGATGCTGCCTGGGCCCTCCTTCAGACAGACGGAGACATGGACGGAGCCTACAGGATGCTTCTAGATTCTGCTGCTAGAACCAACAACGCAGAGCTCCCCATAAGTCAATCAAAGGTTGAGCAGCTGACATACCCAGGTTTTGACAACCAGGTGGTCCTGCCCCCAGAACTGCTGTCCCCCTCTCCCGCCTCCTCACTGTCCGAGGAGCCCAGCACCACCTACGAGTCCGCAGGTTCTGGGAACCAAGGGGAGGCCCCTATGGACGTCGACCTGGTGAATGAGGTGCTGGAGGACATCCCTATACACGAAGAGGACTACCTGGACCTGACcctggaggaggagagcgagGTCATAGACAAGATGAAGTCCTACCTCTACAAGAACTGTGCCTCCTCCAGCTAAAGTACTGTCCAGCCAGCAGCCATTTTGAAAGCACTTCCACCACCACCTATTCCAAGGGTGTTTGATTTGAGTCTTTTTAGGCCCCAAATTAGGTTTGTTTTTCTCTCCTCCACAAGCAATATATTGAAAATTGTATCTTCTGTTTTTGTACTAAAGTGTTATTAATTGAGTTTAATAACACAAACGTTTGAAGCTGGTTGACTAATTTGTAAGGAAATAAACTGACATGGATTAAAGACAAGAGAATTTAACAAATTAAGATTTAGTAGATAAACATTGTTATTGCTCTATGCTTAATAGCTACAGAGGACAAATTTGATTATTTGAAGGTTCATGTTTGAGATTTCAACACAGAATTTAGAATGTGAGGCCTTGGGGCCTATAATTGTATGGTAAAGGGATTTTTGGTTGCTTGTGTAAAAGATTGTTCTACTTTTGTATATGCTCTGGTTTATGTTTGAGATCCCTTTTTAATGGAATTTGATTaagttttaatattttttatatttaaaaatatatatattttatggaGTTTGATGACTGTACTTAGTttttaataggctaaattacacattctgttaacatatCTCCAGTGAGCTTTTCTTGCAATTTATAGTCTGACATTTTGTGATTTAAATTATCATATCTATCACTAAGTAGTGTGGCGGTAGGGaactatttttttttacaaagtcaCTTTACTTAAGTAAACTAcgctgaaccaaaatataaaacgcaacatgtaaaatgttgttcccatgtttcatgagctgaaataaaaaaaatcccaaaaatgttcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445982 lncRNA upstream 23466 18831925 ~ 18836286 (+) True G1265635
TU1445939 lncRNA upstream 73587 18785951 ~ 18786165 (+) True G1265593
TU1445934 lncRNA upstream 81484 18778053 ~ 18778268 (+) True G1265588
TU1445904 lncRNA upstream 116610 18742865 ~ 18743142 (+) True G1265559
TU1445891 lncRNA upstream 123940 18735579 ~ 18735812 (+) True G1265546
TU1446033 lncRNA downstream 52744 18918850 ~ 18919321 (+) False G1265677
TU1446032 lncRNA downstream 52830 18918936 ~ 18919369 (+) False G1265677
TU1446034 lncRNA downstream 52830 18918936 ~ 18919321 (+) True G1265677
TU1446045 lncRNA downstream 77979 18944085 ~ 18958062 (+) True G1265685
TU1446121 lncRNA downstream 181998 19048104 ~ 19136006 (+) True G1265750
XM_021562577.2 mRNA upstream 4431 18850631 ~ 18855321 (+) True LOC110489736
XM_021562572.2 mRNA upstream 279636 18390157 ~ 18580116 (+) False scn5lab
XM_036943977.1 mRNA upstream 279638 18451224 ~ 18580114 (+) False scn5lab
XM_021562564.2 mRNA upstream 534459 18306214 ~ 18325293 (+) True LOC110489731
XM_036943918.1 mRNA upstream 584158 18247143 ~ 18275594 (+) True LOC110489727
XM_036943995.1 mRNA downstream 388534 19254640 ~ 19322131 (+) True lama1
XR_005036362.1 mRNA downstream 426524 19292630 ~ 19292772 (+) True LOC118938968
XM_021562594.2 mRNA downstream 536661 19402767 ~ 19546571 (+) False LOC110489742
XM_021562595.2 mRNA downstream 536661 19402767 ~ 19546571 (+) False LOC110489742
XM_021562596.2 mRNA downstream 536661 19402767 ~ 19546571 (+) False LOC110489742
TU1442095 other upstream 2965588 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 3123335 15735930 ~ 15736417 (+) True G1261980
TU1441924 other upstream 3153213 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other upstream 3155478 15696925 ~ 15704274 (+) False LOC110489686
TU1440827 other upstream 3664807 15193012 ~ 15194945 (+) True LOC110489660
TU1446540 other downstream 808007 19674113 ~ 19680105 (+) True epb41l3a
TU1448574 other downstream 1974189 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 2920115 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 4266753 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 4511202 23377308 ~ 23377560 (+) True G1270643

Expression Profile