RNA id: XM_036943984.1


Basic Information

Item Value
RNA id XM_036943984.1
length 5869
RNA type mRNA
GC content 0.55
exon number 34
gene id LOC110490935
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18918785 ~ 19220905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAAATGGAGCTCATAATGACGCCTCTATTGGAGCGCGCACTGTCTCGAGCTTTTCTCCGAGCTTAGTGACGTCAGTTACCTCCTGGCAGCAAGCGAAGTCACTATCCGAGTGGAGGCTCTTGAAAGATACACAAGTAACCCAGTAGGAAAAGACAGACAGGGGAACACTCCCAGTAGGTACCGGGCACGTTAACTGTAAAACGGAATATTTTCCTCTATCACAGCGGAAGAGTAGAATTGATCTTACCCCGGAGCTGGGGGTAACGTTCGCGATACTCTACCGCAATGGATAGACTTTTAACTTGTCTAATTGCTGCGGGCAGCGTATTGCTTACAGTTCGAGGAGAAGTATTCAAAGGTGACTGTGACTTTGAGGTGCCCTACACGGCATGCGGCTACAGCCAGGGTAAGGATGATGACTTTGAATGGGAGCAGGCTAACACCTTGGAGAGGCCGTCGCCCAACCCCTGGATGCCCACAGactctgccTTCATGATGGTCAACACCAGCGGACGTTTCTCGGGCCAGAAGGCCCAGTTGCTCATGCCCCAGCTCAAGGAGAACGACACCCACTGCCTCATCTTCCAGTACTACGTAGCGGGACAGCGCGAGGGTGCCAACCCGGGCCAGCTTAACGTCTATGTCAAGGAGAACAACAGTCCGCTGGGCATCCCTGTGTGGAACGCCTCAGGGCCCGCCTACCCCACCTGGCGCCAGGTGGAACTGGCTGTCAGCACCTTCTGGCCCAACTTCTACCAGATTGTCTTTGAGGCGGTGAGCACTGGACAAAGAGGTCTACTAGCCATCAAGGATGTCACACTGCAAGGCCATCAGTGCATGAGCACCCCCCACTTTCTCCATATCAAAGGTGTGGAGGTCAACGCCAGGCAGACTGCCACGTTCCAGTGCACCGTTAACGGTCGACCACAAGACAGCCATAACCTCTGGTTACAGGGTATCGGAGGGAGACAGGCCCcgatgagagagaccaggccgGTGAACTCCCGCCGCTACATCGCCACGTTCGACGTGGAGAACACCACCAAGGGAGACTCGGGCCGCTACCGCTGCATCGTCCACTCAGACAAGGGCGTGGGCGTGTCCAGTTACGCCGACCTGACGGTCAAACAGCCCCCGGTGCCCATCGCTCCGCCCCAGCTTACCGCCGTGGGTGCAACCTACCTGTGGATCCAGCTCAACGCCAACTCCATCAACGGTGACGGGCCCATCGTGGAGCGGGAGGTTGAGTACCGCACGGTGGCAGGCAGCCTCATCGACAACCAGCCTGTGGACAAGACCACACACAAAATCGGCCACCTGGACCCCGACACGGAGTACGAGATCAGCGTGCTGCTCACCCGGCCCCTGGACGGAGGAACTGGGGCCCCCGGACCCCCCCTGAGGGCCAAGACCAAGTGTGCTGACCCCATGCACGGTCCCCGAAGACTGGAGGTGGTGGACATCAAGTCCAAGCAGATCACAGTGCGCTGGGAGCCCTTCGGCTACAACGTGACCCGCTGCCACAGCTacaacctgactgttcagtaccGCTACCGGGCCGGCGGCAAGGAGGAGACCCGGGAGGAGGTGTGCTACGACACGCTGAGTGTGGCTCCGCAGCACACCATCCGGAACCTGTCGCCCTACACCAATGTCAGTGTCAAGCTGGTGCTGAGGAACCCAGAGGGCATCAAGCAGAGCACGAACGTAGGCGTGCTGACCGATGAGGATGTGCCTGGCGCTGTGCCACTCGAGTCCATCCAGGGGAGCACGTACGAAGAGAAGATCGCCCTGCGATGGCGCGAGCCTGTCCAGACCTACGGTATCATTAAGCAGTATGAGATCTCCTACAAGGCCTTGAGCTCCTTCGACACGGAGTTTGACCTGACCAACCAGAGCGGCAAGGTGTTTAAGTTCAGCAACGAGACGTCCCACATGTTTGTGGGTCTCTACCCCGGCTCCACATACTCCTTCACCATCCGGGCCAGCACCGTCAAGGGCTTTGGACCTCCCGTCATCACCCAGTTCACCACCAAGATCTCAGCTCCGTTGATGCCAGGCTATGACCAGGAGACTCCCCTGAACCAGACAGACAGCACGGTCACTGTCCTGCTGAAGCCTGCCCAGAGCAGAGGTGCCCCTGTCAGTAAGTACCAGGTGGTTGTGGAGGAAGAGCGCCCCCGGCGGGCACGAAGGGTGGCAGAGATTCTGCGCTGCTACCCGGTGCCCATCCACTTCCAGAACGCCACCGTGCTCAACTCACAGTATTACTTCACGGCCGAGCTGCCCATGGGCGACATCAAAACCCCCGTACCCTTCTGCATCGGAGACAACCGCACCTACAACGGCTACTGGAacgcccccctcctcccccacaaGAGCTACAGCATCTACTACCAGGCTGTCAGCACAGCCAATGGGGAGACCAAAATCGATTGTGTACGAGTGGCCACTAAAGCTGCCATAATCGTGACCCAGCTCACCACTCCCTACATACGCATCGCCCCCGCGGCTGGCGACAACCAACTAACAGGGACTGCGACCAGGAAGCCTGACGCGGTGGAGCCGGAGAAGCAGACAGATCACACGGTAAAGATCGCTGGAGTCATCGCCGGTGTCTTGCTCTTCGTCATCATCTTCCTCGGTGTGGTGCTGGTCATGAAGAAAAGAAGAACCTATCACTCCTACACTTATTACCTGAAACTGGCCAAGAAGCGCAAGGAGACTATGAGCAGCACGCGGCAGGAGATGACCGTGATGGTGAACTCCATGGACAAGAGCTACACGGAGCAGGGCACCAACTGTGATGAGGCCATCTCCTTCATGGACACCCACAGCCACACACTCAACGGGAGAACCGTTTCCTCGCCCTCGTCATTCACCATGAAGACTAACACACTCAGCACGTCTGTACCCACCTCCTACTACCCAGTGCCCATTAATGATGAGAACCACACCATGACCAGTGACACCAGTAGTCTGGTCCAGTCCCACAGCCACTCCTATAAGAAGAAGAGGGAGGTGGCGGATGTTCCTCCCTACCAGACCGGTCAGCTCCACCCGGCCATCCGCGTGGCCGACCTGCTCCAGCACATCACCCAGATGAAGTGTGCCGAGGGCTACGGCTTTAAGGAGGAGTATGAGAGCTTCTTTGAAGGACAGTCTGCACCATGGGACTCTGCCAAGAAAGACGAGAACAGGATGAAGAACCGATACGGAAACATCATTGCATATGATCACTCCCGCGTCCGGCTGCAGGCTATCGAGGGAGAGCAGAGCTCCGATTACATTAATGCAAATTACGTGGATGGCTACCACAGGCCAAATCACTACATTGCTACCCAAGggCCCATGCAAGAGACAGTCTATGATTTCTGGAGGATGGTGTGGCATGAGAACACTGCAACCATCGTCATGGTGACCAACCTGGTGGAGGTGGGCAGGGTGAAGTGCTGTAAGTACTGGCCTGACGACACTGAGATCTACAGGGACATGAAGGTGACCCTCATCGAGACCCAGCTGCTGTCAGAGTACGTCATCAGGACCTTCGCCGTGGAAAAGAGGGGAGCCCATGAGATCCGGGAGATCCGTCAGTTCCACTTCACGGGCTGGCCGGACCACGGGGTGCCCTACCACGCCACCGGCCTGCTTGGCTTCGTACGCAGGGTCAAGTCCAAGACCCCTGCCAACGCCGGGCCCATGGTAGTCCACTGCAGTGCGGGGGCGGGCAGGACCGGCTGTTTCATTGTGATTGACATCATGCTGGacatggctgagagagagggtgtggtCGACATCTACAACTGTGTGAGAGAGTTACGCTCACGAAGGGTTAATATGGTCCAGACAGAGGAGCAGTACGTGTTCATCCACGACGCCATCTTGGAGGCGTGTCTGTGCGGGGACACCACCATCCCAGCCAACCAGCTGCGATCGGTCTACTATGACATGAACCGCCTGGACCCCCAGACTAACTCCAGCCAGATCAAAGAGGAGTtcaggacCCTGAACATGGTGACTCCTACGTTGCGTGTGGAGGACTGCAGCATTGCCCTGCTCCCCAGGAACCACGAGAAGAACCGCTGCATGGACGTCCTCCCGCCAGACCGCTGTCTGCCCTTCCTCATCACCATCGACGGAGAGAGTTCCAACTACATCAACGCCGCTCTCATGGACAGCTACAAGCAGCCATCTGCGTTCATCGTTACCCAGCACCCCTTGCCCAACACGGTCAAAGACTTCTGGAGGCTGGTGCTGGACTACCACTGCACCTCTATAGTGATGCTCAACGACGTAGACCCAGCACAGctgtgTCCCCAGTACTGGCCGGAGAACGGCGTGCACCGCCACGGGCCCATCCAGGTGGAGTTTGTGTCAGCTGACCTGGAGGAGGACATCATCAGCAGGATATTCCGCATCTACAACGCTGCACGGccacAGGACGGGTATCGCATGGTGCAACAGTTCCAGTTCCTGGGCTGGCCTATGTACCGGGACACACCTGTGTCCAAGCGCTCCTTCCTCAAGCTCATCCGCCAGGTGGACAAGTGGCAGGAGGAATATGACGGAGGGGAGGGACGCACCGTCGTACACTGTCTgaatGGTGGAGGACGCAGCGGGACGTTCTGTGCGATCAGCATCGTGTGCGAGATGCTGCGTCATCAGCGTTCGGTTGACGTGTTCCACGCAGTCAAAACACTGAGGAACAACAAACCCAACATGGTCGACTTACTGGATCAATACAAGTTCTGCTATGAGGTGGCACTGGAGTACTTGAATTCTGGTTAGCTGGGCTGaaagatacccccccccccctaacccccGCACCACAGCCCTCACAGCTTACCTGGACTGAGTCTCTTCAACTTGAGTGAATGTTGGTTACTGGAGGATAGAACTGAACTGCTGAACAGGGTCATCCCATCGCACCTCTACGGATTTAGGCTGAGGGGAGGAAAGAAGGTGGTTTGGAACCGGACGCTTTTGCACTGCCCCCCCGCCCCCATTCTACGATAAAATGTCCCTGAACTTGATTAACTTTACTCTGTCTCatccctgacccccccccccccccccaccaccccccaccCCGCTCTCCTCTTTCTACTAGACTGTGTTAGTATTTACCCTCGTCCTCCCCTGTCCCTCAGAACAGCACCTGATCACTGAACAGGAGTTCACACTGATGTATTCTACTGCCCCtatgtcaccccccccccaccccaaccctAGTCTTTTTTTAAGTTTATTTTTTCAACAAAAAAGCTCTTGCCAGTGAATCCTGTTTATTGCCTTTTTAATCCTCATCGGATGATCAATGTCATTTCCATTTTTGTGGGGAATGCGATATAAGTGTAATGTTGATGATATGTTGTTTTTTATCCTTGTTTttaatttccattgataattttttttttaacagtgtTTGTTAATATGATGAAGCTGTTTGACATGTATAGTTGTAAAGTTGAACCGGCATTATGAAAGAAAGCAAAATCTTAAATGTGTATGCTGCCATTGCTTCGGTCGCATtggctggaggaggagaagaaaaacGCACTCCGGTACCATCCACACTCAAGCTTTTCATCACGTCAGCAGATCCAAAGCTTCATTCATTGTGGTCActattgttaatattgtaaatattaTGAAGTTGGACAGACTATTTATTCATTGAGAGTTTTTTGTGAAGCACATTGAGTGACaatcatgatttttttttttggggggggggggggggtcatatttgttttattttctcgAACTCTGCATAATGTTGACCAGATGTATTGTAAGCCTTTTATTTATCTTGTATGGAAAAAAACAACTCAAACTTACAAATACATACATATCTACTGATATa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446806 lncRNA downstream 58519 18859726 ~ 18860266 (-) True G1266325
TU1446801 lncRNA downstream 67896 18850600 ~ 18850889 (-) True G1266320
TU1445892 lncRNA downstream 183149 18735271 ~ 18735636 (-) True G1265547
TU1445808 lncRNA downstream 235573 18667066 ~ 18683212 (-) True G1265464
TU1445794 lncRNA downstream 343836 18574667 ~ 18574949 (-) True G1265454
TU1447061 lncRNA upstream 144707 19365612 ~ 19426849 (-) True G1266552
TU1447201 lncRNA upstream 189943 19410848 ~ 19427740 (-) True G1266686
TU1447348 lncRNA upstream 371986 19592891 ~ 19593178 (-) True G1266819
TU1447410 lncRNA upstream 438969 19659874 ~ 19662581 (-) True G1266880
TU1447445 lncRNA upstream 488057 19708962 ~ 19709962 (-) True G1266910
XM_021562585.2 mRNA downstream 1929 18882806 ~ 18916856 (-) False LOC110489739
XM_021562586.2 mRNA downstream 1929 18882806 ~ 18916856 (-) False LOC110489739
XM_021562587.2 mRNA downstream 1929 18882806 ~ 18916856 (-) True LOC110489739
XM_021562584.2 mRNA downstream 44561 18871226 ~ 18874224 (-) True crygn2
XM_036943980.1 mRNA downstream 69728 18832011 ~ 18849057 (-) True xylb
XM_021564356.2 mRNA upstream 15195 19236100 ~ 19237676 (-) True LOC110490936
XM_021562592.2 mRNA upstream 101120 19322025 ~ 19343200 (-) False LOC110489741
XM_021562593.2 mRNA upstream 101120 19322025 ~ 19351415 (-) False LOC110489741
XM_021562590.2 mRNA upstream 101120 19322025 ~ 19372405 (-) False LOC110489741
XM_021562591.2 mRNA upstream 101120 19322025 ~ 19372405 (-) True LOC110489741
TU1445798 other downstream 338622 18576539 ~ 18580163 (-) False G1265456
TU1445799 other downstream 338622 18576718 ~ 18580163 (-) True G1265456
TU1445796 other downstream 338994 18576718 ~ 18579791 (-) False G1265456
TU1445577 other downstream 734662 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 1455808 17461828 ~ 17462977 (-) True G1264199
TU1447224 other upstream 214113 19435018 ~ 19453770 (-) True G1266708
TU1448004 other upstream 1047061 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 1069445 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 1737467 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 2581782 21802687 ~ 21803352 (-) True G1269265

Expression Profile