RNA id: TU1446844


Basic Information

Item Value
RNA id TU1446844
length 452
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC110490935
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18918785 ~ 19220905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGCTCTTGCCAGTGAATCCTGTTTATTGCCTTTTTAATCCTCATCGGATGATCAATGTCATTTCCATTTTTGTGGGGAATGCGATATAAGTGTAATGTTGATGATATGTTGTTTTTTATCCTTGTTTttaatttccattgataattttttttttaacagtgtTTGTTAATATGATGAAGCTGTTTGACATGTATAGTTGTAAAGTTGAACCGGCATTATGAAAGAAAGCAAAATCTTAAATGTGTATGCTGCCATTGCTTCGGTCGCATtggctggaggaggagaagaaaaacGCACTCCGGTACCATCCACACTCAAGCTTTTCATCACGTCAGCAGATCCAAAGCTTCATTCATTGTGGTCActattgttaatattgtaaatattaTGAAGTTGGACAGACTATTTATTCATTGAGAGTTTTTTGTGAAGCACATTGAGTGACaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446806 lncRNA downstream 58674 18859726 ~ 18860266 (-) True G1266325
TU1446801 lncRNA downstream 68051 18850600 ~ 18850889 (-) True G1266320
TU1445892 lncRNA downstream 183304 18735271 ~ 18735636 (-) True G1265547
TU1445808 lncRNA downstream 235728 18667066 ~ 18683212 (-) True G1265464
TU1445794 lncRNA downstream 343991 18574667 ~ 18574949 (-) True G1265454
TU1446877 lncRNA upstream 38833 18958224 ~ 18959762 (-) True G1266384
TU1446904 lncRNA upstream 77583 18996974 ~ 18998548 (-) True G1266411
TU1446917 lncRNA upstream 96838 19016229 ~ 19083858 (-) False G1266424
TU1446918 lncRNA upstream 96838 19016229 ~ 19083858 (-) False G1266424
TU1446919 lncRNA upstream 96838 19016229 ~ 19083858 (-) True G1266424
XM_021562585.2 mRNA downstream 2084 18882806 ~ 18916856 (-) False LOC110489739
XM_021562586.2 mRNA downstream 2084 18882806 ~ 18916856 (-) False LOC110489739
XM_021562587.2 mRNA downstream 2084 18882806 ~ 18916856 (-) True LOC110489739
XM_021562584.2 mRNA downstream 44716 18871226 ~ 18874224 (-) True crygn2
XM_036943980.1 mRNA downstream 69883 18832011 ~ 18849057 (-) True xylb
XM_021564356.2 mRNA upstream 316709 19236100 ~ 19237676 (-) True LOC110490936
XM_021562592.2 mRNA upstream 402634 19322025 ~ 19343200 (-) False LOC110489741
XM_021562593.2 mRNA upstream 402634 19322025 ~ 19351415 (-) False LOC110489741
XM_021562590.2 mRNA upstream 402634 19322025 ~ 19372405 (-) False LOC110489741
XM_021562591.2 mRNA upstream 402634 19322025 ~ 19372405 (-) True LOC110489741
TU1445798 other downstream 338777 18576539 ~ 18580163 (-) False G1265456
TU1445799 other downstream 338777 18576718 ~ 18580163 (-) True G1265456
TU1445796 other downstream 339149 18576718 ~ 18579791 (-) False G1265456
TU1445577 other downstream 734817 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 1455963 17461828 ~ 17462977 (-) True G1264199
TU1446969 other upstream 189168 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 515627 19435018 ~ 19453770 (-) True G1266708
TU1448004 other upstream 1348575 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 1370959 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 2038981 20958372 ~ 20960089 (-) True G1268555

Expression Profile