RNA id: XM_021562597.2


Basic Information

Item Value
RNA id XM_021562597.2
length 3781
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110489742
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19402767 ~ 19546571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGTTCGAGAGCATGCGCACAACCGCAGCAagagaacattattcctcctgtCACCAGTGCCTGTCACAACATTGAGGGGCAAAACGACAGCAGTGTGGTCTCTGGCTTCTAATAGATCTGTGAAGACATAGAATGTGATTGGAATGGAAGCTCGGAGAAGGAGTCCCTGATTGGCTGAAAGACTGGGCGGGTGCACATACCAAACGGAGCGACCAAACGAGGACACTGTAAAAATGAAGAACAAAGTGACAAGCACACAAGTGAGGGGTAAGAAGAAGGCATGGTCGTGGGATCAATACCTGGGAGAGAAGAAGGTCATAGCAGCTCCCCTAAGACTCTTCACTGAGgcCCAGTCGTTCCCCCTTAGCAGAAATGGTTTCAAGGTGGGGATGAGGCTGGAGGGGATCGACCCTCTGCACCCCTCTATGTTCTGCATCCTGTCCGTGGCAGAGGTAATTGGTTACCGATTACGTCTCCACATCGACAGCTACTCAGAATGCTATGACTTCTGGGTAAACGCAGACTCTCCGGATATCAGGCCAGCCGGATGGTGCGAGTCGACAGGACACCAGCTCCACCCACCAAAAGGCTACAATGAAAGCGAGTTTAACTGGGAGAAATACCAAGAGGCTTGCAATGCTGAAGCTGCACCAAAGAATCTGTTTAAATCCCAAAATGGTACTACGAGCACCTCTAAGTTTCAGGTGGGCATGAAACTGGAGGCAGTGGACAGAAAGAATCCATGCCTGGTATGTGTGGCCTCGGTGGCCGACATCGTGGACAATCACTTCCTGGTTCACTTTGACAACTGGGACGACACCTACGACTACTGGTGTGACGCCAGCAGCCCTCACATCCACCCAGTGGGCTGGTGCCAGGACCACGGAAGACCTCTCACTGCACCTCAGGGACACCCCAATCCAGAACATTTCCTGTGGGAGGAGTACTTACAAGACAACGGTTCCACGGCGGTTCCAAGCCAGGCTTTCTGTATGAGAGCGCCTCACAGTTTCCAGGTGAACATGAAGCTGGAGGTGGTGGACAGGAGGAACCCCATGCTGGTCCGCGTGGCCACCGTCTCAGACACTGAGGACTACAGGGTCAAGATCCATTTTGACGGCTGGCATGAGAAGTTTGACTTCTGGGTGGACTCTGACCTGCCGGACCTTCACCCTGTGGGCTGGTGTGCCCGGACAGGTCATCCCCTGGAACCCCCCCTTTCACACACAGGACCTTCTGACCTTAAGAGCTCCGTGACCCAGGGAGTGTGCCCCACTCCGGGCTGCAGGGGTGTGGGCCACATCAAAGGAGCCAAATACACAGGACACCACAGTGCCTTCGGCTGTCCCTACTCCGACATCAACATGAAGAAGGAGGCTGTGCTGCCTGACCGGCTGGGCGGCGAAAAGCAGATCACCTTTGTCCCTGTGCACTTTGTCCAGAAGACCAAGAGGCTGTGCACTGCCGACGAACAGGAGGAAGCCACGCCCCAGGACACTCCCATGGAAACCAGGGCTATGTTGTCAGGGTATGAGGAGGCTGGTCGTCTGAGAGGACGACCCCCAGCCAACCCCCTGGTGAAGAGAGAGCCAAGGGAGGAACCAGCCACAGCTCAGGGACAGAAGCTCCTCTCTCTGGGGAAGAGAAGCCTACCCAGCAGGCTCTCCCAGTCAACAAAATATCTGCGagtcaaagaggaggaggaagagattgACTTGAATAGCATGATCACAGAGCACAGCGTGGACAGCCTGCAGCAGGCCCTCCACCAGTCGGTGTTCCTGTCGGCAATGTCGGCCCACCCTGGCCGGGACCTGCCCCTATGCTGGGAGCAGCACTGCAAGCTGCTGCCTGGAGTGGCCGGAGTACAGGCCAGCCGTGTGGCCCACTGGACCGCGGACGAGGTGGCTGACTTTATCCACTCTCTTCACGGCTGTGATGAACAAGCCAAGCAGTTCAAAGAGGAGCAAATTGACGGGAAAGCCTTCTTGCTGCTGACCCAGCGCGACATCGTCAAGATCATGAGCGTGAAACTCGGTCCTGCCCTCAAGATATACAACTCCATCCTGATGTTCAAGCACGCTGAGGACAACCAATCGGCAGCTGGCAACGCCAACACATGAAGCATCGGAAGCCACACCCACCAGGCCCACCCTATGTGTCTGTCAAACACATAGATTTACTGTATGGATTCATTCCAAAATCCCTGACCCCTGACTCCTGCTCCTTCACCTTGGCCTACAGGCACTTTAGTTAAAGGACTTGAACTTCAACTAATGCCGCTACATGATCTGTCCAGACCGATGGACTttcaggtttgtgtgtgtgcatgtgcgtgcgtgtgtgtgtcttcttcCTTGGACACAGCCTCTAATTCTGCCTTTAATACTCAAATGTGGGTGTCATGAAGGTCAACTCAACAAAACCCGCATTTACAGCTACACAGCACAGTTTTCTATGTCTTTTACGCTGTAGCTTCTCCATGCTCTACTTTTCTCCTTCAGGATCAAAGAAGTGACAATCACCATCAACAGTACAAAGCCGTGTACTACATCATGACAAACTGGGCTTTTTCTGGGTCATCACGGTGCTATGTGTATTCCGATTACAGTCTACATCACAGTACGGGAGTTGACCTCTGGTACTACCAGCTTACGATCTCTGTCTATCGACTCAAACAGGGATACATATTCCAAACGTCTCtgccattttgatttgttttgattctATTTTGTATAAATGTTATGTCACTACCTATATCCACTCACCTATATTTATTGTGAAAAATATCTTGGTGTTTGCATAGTTGAAGGAAattaatatattatatatgaGGAAATTGTTTTAAATTTAATTTGATAATATATTGCACATTAGAAGAACGAAAAATAACTTTACTTACGTTTTGGAAAATGTAAAACCATGGGATAGCTTTGAGCTGAAGATTAGTCTAAATAAGTGTCAtttatgttattataatgttaaggtAGTTAAGATATCTTACGTAGTCTTACTTTCTGTGGTACTGCAGCTGGAGACAATAGCCATGTACGTTTATCATGATTTACCTTTTGATCCATACTCGTTGAAAAGGACCAATATTGTATTTTCTGTTCTCCTTCATTTTCATTTTTTCTCTCCTTTTTACCATTGGGGTAAGTTTTCTCACAGTCCTGATAGGTTGAAGTTGTTTTCTTATTATCAAAGAACAGCATACTTGATCTTCTGCACAATTAAGAGTTTAATCGTATATTTTGCTATAACTTGGAACAACTGTGCTATATCATTTGTTCTCTAGTCTTAATATGAATGTTGCTACTAAATTTCAACAGAACTCCATTGAAACTTCAGGAATATGAAGAAACCGTTTACTGTACTTTCTGCTTTTTTCCTATAGGGACTTTCTCTCTATCCCAAATGTCAAGCATCCGGAAACCTATATTTTATTCTGATGCTGCTTGTCTTTCTCAATGCTGTAACGCGCAAGACTGCTGTTTAGTGCATGGACAATAGTGCTACATCTTGGTACAACCTCCAATATGGAGTTAGATATCTGCCCTTAACATATTCTACACGTATTTAGGTGACTCACAATCTATTTTGGCGGATATCTACCTCCATATATCGACCACTTATCTATGAAAATGACAACTAATTGAACCATAAAGATGTGTTGTACATATTTGTAAACCCTGTTTCTTACATTGAATTTACACTTTGTACACACTTAATGGATTCAGATCACATGACTTCACAATCCAAATAAACAGTGCAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446269 lncRNA upstream 106355 19295932 ~ 19296412 (+) True G1265889
TU1446121 lncRNA upstream 266761 19048104 ~ 19136006 (+) True G1265750
TU1446162 lncRNA upstream 290106 19111565 ~ 19112661 (+) True G1265790
TU1446045 lncRNA upstream 444705 18944085 ~ 18958062 (+) True G1265685
TU1446034 lncRNA upstream 483446 18918936 ~ 18919321 (+) True G1265677
TU1446608 lncRNA downstream 208605 19755176 ~ 19755845 (+) True G1266153
TU1446606 lncRNA downstream 213567 19760138 ~ 19762431 (+) True G1266151
TU1446612 lncRNA downstream 220736 19767307 ~ 19768614 (+) True G1266156
TU1446615 lncRNA downstream 227584 19774155 ~ 19774960 (+) True G1266159
TU1446617 lncRNA downstream 230900 19777471 ~ 19777680 (+) True G1266161
XM_036943995.1 mRNA upstream 80636 19254640 ~ 19322131 (+) True lama1
XR_005036362.1 mRNA upstream 109995 19292630 ~ 19292772 (+) True LOC118938968
XM_021562583.2 mRNA upstream 536661 18859751 ~ 18866106 (+) False LOC110489737
XM_021562599.2 mRNA downstream 12482 19559053 ~ 19569524 (+) True LOC110489743
XM_036943997.1 mRNA downstream 51713 19598284 ~ 19680110 (+) False epb41l3a
XM_036943998.1 mRNA downstream 51713 19598284 ~ 19680110 (+) False epb41l3a
XM_036943999.1 mRNA downstream 51713 19598284 ~ 19680110 (+) False epb41l3a
XM_036944000.1 mRNA downstream 51713 19598284 ~ 19680110 (+) False epb41l3a
TU1446004 other upstream 540256 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 3508603 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 3666350 15735930 ~ 15736417 (+) True G1261980
TU1441924 other upstream 3696228 15696925 ~ 15706539 (+) False LOC110489686
TU1446540 other downstream 127542 19674113 ~ 19680105 (+) True epb41l3a
TU1448574 other downstream 1293724 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 2239650 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 3586288 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3830737 23377308 ~ 23377560 (+) True G1270643

Expression Profile