RNA id: XM_021562599.2


Basic Information

Item Value
RNA id XM_021562599.2
length 3305
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110489743
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19559053 ~ 19569524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTTTCTGAGTGCGCCAGGTGCTTTGCGCAGGTCATTTGCAGACACTAACACAAGTCCATCGTTCCTACTTCTAGCCAAAAACGTTGGAGAGGTCTCACCACACGCGTTCTGGACGTTAGCAGCAGCACAACGCTTCAGATCCAAACATGGATGGGGAGTGTTCGTTACCGAGAGGATAGTTAAGAAGGCAATTATTCAAATCCTGCAGCAATTTCAGTCGATGGCTGCTGTGGTGGTATCATAGCAACAACACCCAATAATTAGAAAAATATTAACAATAGCCCCGTATCACCCGCTGCCTGCCAGCACAAAACTCTCCATTACAAACTCGGCGCGCTGCTCTCTGACAAGACACTCCCTGGAGAGGAGCGCGGGTGAGCCGGATAAAAAGGATAGTATTTTTCTCCCAGACGCAGGTTGACTTGGAAAGGCTTAAGCCTCGATGAAAACTACATCGCCGAGTGACTGTGACTGGATCCTCTTGCTAAAGAAGATCGCCAGATCCTTTGCAAGAATGGAATTACATGGAATAAACGAAGTTTCCTTTTACGACATGAGATATCCGCGCCCGGGAATCGAAACTTTCTTTCAGGGTTTTTAATATGTGGTTGCATTGCCTGTCTTCTATGcctcagGATGAGTGAGTGAGCAGTCCGTCTGCCAAGTCCCAACCATGATCGCCACCGGAGGCCTGCTGCGGATCAACAGGAGGCAGGACTCGCTGCGCTCTAAGAGCCGTGCCGAGAACAAGCGTAAGAGAAAAGCCAAGAAGAAGCGGAAGAATGAGGTGGTGGTGGTCAAGGGCAAGCTGAATCTCTGCTCCATCTCGGGGGTGGTGGCGGCTATTGGGATTCTAATCCTACTGGTGGGCATTGCCATGGCCATACTGGGTTACTGGCCCAGGGAGAGCCCACTGTATCCGGATCCGCCCAAAATCCAGATAATTTACAACAAAAAGGAGGAGTCAGGGCTGACAGGCAACTGGACGAACAACGCGAAGGACGGATTTCACTTGGATGGGGATTTGGTCAGTAACAATCGTTCCAACGGCACAGGTTTAGAGCAGCCGTCTATGGGCTTCCTGGCTGAGTTCTTGGATAAGTACCTGTACTCGGACAAGTTGAAGGTGTTCGGTCCCCTCATCATGGGCATTGGCATCTTCCTGTTTATCTGCGCCAATGCGGTACTGCATGAGAACCGCGATAAGAAGACCAAAATCATCAACCTGAGGGACATCTACTCCACTGTCATTGACATCCACAGCTTGCGGACTAAGGAGAACATGCCGCTCAATGGCTTTGTGAACTACATGCAGTCCAAAGGGGTGGAGGGCAAACCTAGCGCTGCATATACCGCCGCCCTACTAGCCAAAGGCACTTGGCCATCGGGAGGTTCGCCGGACGAGGGCAGCCTGGGCCCCTCCAGATGCCACTCCCTGACTAGGTCAAGGGTGTCATCTCTAGAGAGGCAGACGTTCACCGACACAGTCTACACTATCTCCAGACACAGCGGGGCCGGCCAGCAGAGCAGCCCGATTTCCATCCCCAAACGGTGGGAGACCCGGACAATAGTGGCCTCCTCGGTCAACGCCTTCACTCTCCCCATGACCAAACCCAACTATCGGGCCAACCAGCATCAGCGCAGGCCTTCAGCCAAAGCAGAGGCAGGGAGGAGCAGGGCTGCCCTGTGTGACTCTGGCGAAGAAGACGAAGCCTGGGTTGGGTACGGTGTTCCAGAAACCACCACCCAGGCAAATGTGGAGACTTTGCAGACGGCTATGCTCCTGCCTCAGGACTCTGTGGAGGTGTACAAGAGCAGTGGTAGCCTCCAGGGGGCGCTTCAGGGCTCCCAGATCCAGCTGCTCCCCTCGTCCCCCACTGGCCCCAGGGTGATGGGTTCCCACTTGTCCCTCAGCGCCCTGACGGACTACTCCAGGTCCATTGACCTGGGCATCACTCCATCCACCCCCACCGAGTGGAAGGTGGAACGGTCCCGGCGACTCAGCTGCCCTCGTTTAGAGGTACCGGGAGGCGGTGGGTACATCAAACTGGGCGGCCTGGGGGGGGAGTCCTTTGAGTCAAGGGAGTCATGTGAGGTGACCGCCTTCAGCCGAGTGACCTCAGAGGAGGGTCTGGCTAAGAGTCAGAGGGAAGGAGGAGTAGCCAATGACCAGGAGGAGAGCAGCCCCGGGGAACGGCAGGACAGGTGCTCAAGGCGATACTCCAACAAAGAGAAACTTCTCATGATCTCTCAGTCAGACTCCGTTTTGGACGATGAGGAAGTGGATAGCACAGAGATATGATTGGACAATTACTGATTGGTGGATTGAGTTTATTTGGAAAAAAAATGGGCACATGATATCTCGCAGTTGGTTGAAGACACTTGACAACAGTTTCATGGAATTATGACAACGACAATACTGCATAGGATCTGAGATCTAGAGGATCTTGTGGTTCGTTGCAAATGCAATTATCGATATGTGACCAAAAACTGGACATGGTCTTTGGAGGCTATGAAAACAGAAGactgtgtgtatatagtattttGTCAAGGGTTTGTTTGTGTAGGTTGGAAGCATCGCACCCAACTGAAAGAGTTTCAAAGCAAAAAGATAACATTAACCAAAAAAGGGCCCGTTTTAAAATGGTGATTGAACCGTTAGTTACTGTACCATCCACTTGATGTAATAGTTTCTCTAATTTGTAGAAATatagtgtgtgtctgttccaCCTACTGTCACAACTGATACTGTAGTAGTATATTGATTGAGAGTTGCTGTCTCAACAGCATGTATTTTGTACTTTAATGTCCTTGCCGTTTTTATCAGTTTGAATTCAAACTTTAATAGCAATACATCATTGACCATCTCTGTTTGCTTGTGGGGGAAACAATGTTGGCATATTTGCCTGTGTGTCTTTTAAATTCTCTGAGTAAGGCTTGTTGGTTATTGTTTAGAACTGTCTTGCTTGTTAAGGAATCTCCTGTGTATCTTTGCTATCGCTTTTGCCTGAGCGAAATTAAAAACAACACTCTAACTAGCACAATTCACAGCTGAACACTTGTATCTCTGTACAAGTAGCCTAAGTACCTTAGCACAAGTAACCATCTGTGGAAAAAAATACTTATCAAATCAATGTTATCCTGTGCAAAAGCAGCTGGATTGTTTTTGTAGTTGGTTCTTGTTCAATAACACACCTGCAGTAAATAATTGTATTCCAATTGTTCCTGGTGCCCATGGTCAATTCAACCATCCCATGGTCGTCCTATGGCTCAATCAGTCTTCAAATAAACTTATGAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446429 lncRNA upstream 65397 19492797 ~ 19493656 (+) True G1266041
TU1446269 lncRNA upstream 262641 19295932 ~ 19296412 (+) True G1265889
TU1446121 lncRNA upstream 423047 19048104 ~ 19136006 (+) True G1265750
TU1446162 lncRNA upstream 446392 19111565 ~ 19112661 (+) True G1265790
TU1446045 lncRNA upstream 600991 18944085 ~ 18958062 (+) True G1265685
TU1446608 lncRNA downstream 185652 19755176 ~ 19755845 (+) True G1266153
TU1446606 lncRNA downstream 190614 19760138 ~ 19762431 (+) True G1266151
TU1446612 lncRNA downstream 197783 19767307 ~ 19768614 (+) True G1266156
TU1446615 lncRNA downstream 204631 19774155 ~ 19774960 (+) True G1266159
TU1446617 lncRNA downstream 207947 19777471 ~ 19777680 (+) True G1266161
XM_021562594.2 mRNA upstream 12482 19402767 ~ 19546571 (+) False LOC110489742
XM_021562595.2 mRNA upstream 12482 19402767 ~ 19546571 (+) False LOC110489742
XM_021562596.2 mRNA upstream 12482 19402767 ~ 19546571 (+) False LOC110489742
XM_021562597.2 mRNA upstream 12482 19402767 ~ 19546571 (+) False LOC110489742
XR_002468616.2 mRNA upstream 12482 19402767 ~ 19546571 (+) True LOC110489742
XM_036943997.1 mRNA downstream 28760 19598284 ~ 19680110 (+) False epb41l3a
XM_036943998.1 mRNA downstream 28760 19598284 ~ 19680110 (+) False epb41l3a
XM_036943999.1 mRNA downstream 28760 19598284 ~ 19680110 (+) False epb41l3a
XM_036944000.1 mRNA downstream 28760 19598284 ~ 19680110 (+) False epb41l3a
XM_036944003.1 mRNA downstream 28760 19598284 ~ 19680110 (+) False epb41l3a
TU1446004 other upstream 696542 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 3664889 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 3822636 15735930 ~ 15736417 (+) True G1261980
TU1441924 other upstream 3852514 15696925 ~ 15706539 (+) False LOC110489686
TU1446540 other downstream 104589 19674113 ~ 19680105 (+) True epb41l3a
TU1448574 other downstream 1270771 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 2216697 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 3563335 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3807784 23377308 ~ 23377560 (+) True G1270643

Expression Profile