RNA id: XM_036944000.1


Basic Information

Item Value
RNA id XM_036944000.1
length 4094
RNA type mRNA
GC content 0.50
exon number 24
gene id epb41l3a
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19598284 ~ 19680110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGGGGACGGTTTTGCAGAACCAAATTCAGAGTCCAGCGCGGACCAGCAGGAGGCCAGTGCGGTTCCACTCCTGGAGGCGGACTCTTTCCCCCCGGCCGCCGCCCACAGCACGCCTGTCAGGAAGAAGCAGAAGGGCGAGAGAGCGGAGGGAGGCGTGGTCCCACAGGAGAATCAGCTTGAGCCATCGCAGGTGGAGGAGGACAGGACCTCACACAGGTCGTCCACCAGTAAGCTGTCCAGGTCTCCCGGTGGAGGCCGGAGCGTCCGCAGCTACAAGACCATGCAGTGCAAGGTCAACCTGCTTGATGGCTCCGACTACACCTGTGTGGtggagAAACGGGAGAGAGGCCATGTGTTATTCCACAAAGTTTGTGAGCAGCTTAACCTCCTGGAAAAGGACTACTTTGGCATCACATTCCGGGATATCGAAAACCAAAAGAACTGGTTAGACCCATCTAAAGAGATGAAGAAACAGATCAGAGGTGCGTGGAATATGGGAGTCGCCTGGAATTTTTCATTCAACGTGAAGTTTTACCCTCCAGACCCTGCCCAGCTGTCTGAGGATATTACAAGATATTACCTGTGCCTCCAGTTGAGAGATGACGTGGTGTCGGGTCGTCTGCCCTGCTCCTTTGCCACCCACACGGTGCTGGGATCCTACACAGTCCAATCAGAGTTGGGGGACTACGATCCAGAGGAGTCTGGGACAGACTACGTCAGCGAGTTCCGCTTTGCCCCCAACCAAACCaaggagctggaggagaaggtCATGGACCTGCACAAGAACTacaaaggaatGATGCCAGCTGAGGCTGAGATGCACTTCCTCGAGAACGTGAAGAAGCTGTCCATGTACGGAGTGGACCTACACCATGCCAAGGATTCCGAGGGTGTTGAGATCATGTTGGGCGTGTGCTCCAGTGGTCTTCTGATCTACCGCGATCGCTTGCGCATCAACAGGTTCGCCTGGCCCAAGGTCCTCAAGATCTCCTACAAAAGGAATAATTTCTACATCAAAATACGCCCTGGAGAGTTTGAGCAGTTTGAAAGTACAATTGGGTTCAAGCTCCCCAACCATAGGGCGGCCAAGAGATTATGGAAGGTTTGCGTGGAGCACCACACCTTTTTCAGgtTGGTGTCTCCAGAAACTCCCCCCAAGAAGTTCCTAAACCTGGGTTCTAAGTTCCGCTACAGCGGGAGAACCCAGGCCCAGACTCGACGAGCGAGCTCCCAGATCGTCCGCCCAGCGCCCTGCTTTGAGCGCTCCACCAGCAAGCGCTACATCATGTCTCGCAGCCTGGACGGAGCTCCGCAGAGTACACCCAAAAGGAGTACACCCAAAAGGAGTTCACCCAATAGGAGTTCACCCAAAAGGAGTTCACCCCAAAAAACTGTATCACCGAGAATTAAACCACCTGCTAGTTTAAACGGCACTAAACCAACAGAGATGGGCTCGGATCTATACGGAAGGGCGAAGGGCATTGCCGTGAGTGACCTCATCACCACAGTGACACCGGAGAAAaaggtggaagagaggaaggCAGAGGAAGAGGTGGAAGTAGAGGtgcaggtggaggtggaggaggaagacgagACCACGAAAGCCACCGAGATGTCTCAGCCAAGTCCAACCTCTCCCATTCGACATGACACCAAGACGGAACTGACTGACACTTGTGTCGATGGTGAACTAACAGCTACTGAGTCGGACCAAGACGACGAGTCAGAGTTAAAGACACAGGACACAGTGGGCACGCCAGAGGAGCTGTTGAAACACGCAACCAACATCAGCGAGCTCAAGAGGTCGTTCCTGGAGACGGGCGCCGACACGGCCGGCCTCACCGAGTGGGAGAAGAGGCTCTCCTCGTCCCCCCTGCGCTCGCTGCGTCTCGACGAAGCCCCTATGATTGAACCACTGGAGCTCGATGAAGTACCGAGcaaagaggatgagagagaggatgagagagtcaTGGCTGCAGGCGGTAGCATTGAGGAGGAGATCAACCACAGCCCTGTGGATACTAAGACTACTGTGCCTAAGCCGACCTTTGAGGAGATGTCCCCGGAGCTCACCGCTCTCTTACATTCGGCCCGATATCAGACCAGCACGCGGGGTTGGACTGCCTCGCCTGCCCATAGTCAGGCCCTGCTCAAGACAACAGAGAAGGTGGAGCGGATCGTGCTGCAGACAGAGGTGGTATCATCACAGCAAACAGAAGAGGTTGAGGATCAGCCGAAAGAACAGCCGGCAGAGGACCAGGAGCAGCCGGTGGAGAAACAGCCTGACGACCGGCCTGACGACATGGAGAAACAAGCTGGTCAGCAGCCTGAGCAGaCATCTGCGCTGGAGTCTCCAGAGGTCCTGACCTTCAACAGGGCAGACGTgatggaggagacagagatgCTGGTGCCCAAGGACGTACCTGTAATACACACGGAAATGAAAACCATCACATACCGGTCACTGGAGGGTGACGCTGACACTGATCCAGAGGCGGGGGTGTTGATGAGCGCCCAGACCATCACCTCAGAGACCACCAGCACCACAACAACCACACATATCACCAAGACTGTGAAAGGAGGAATCTCGGAAACGAGGATCGAGAAGAGAATCGTCATCTCGGGGGATGCAGACATAGACCATGACGAGGCCCTGGCTCAGGCCATAAAAGAGGCCAAAGAGCAGCACCCTGACATGTCAGTGACCAAAGTAGTGGTCCACAAAGAGACTGAGATCACGCCCGAGGAGGGCGAAGAATGACCGCAGGATTGAAGGATCACTGGGTTCACCGACGTTTCAGGGGCATTCTGTTAACGTTACTTCACGCTCTTCAGAGTATGAGATGCAAGCAGGATAGTGACGTTGCCAACAGACAACACACCACTGTAGAggacactactatactactccgTCTGACTACTACTGGACTAACCTAACCCACACTCACCAACACTACTTTCAAACACAGACCTCCAAAGCTGGCCAGCCCTTCATTGGAACATGTATACTGCATGAAAAGGGATAATTTCTGCATTTTGTAAAGGAGAAAACAAATACATTGGAGGAAATATCAAATTATATACATGTTTTACTTGACCTGTGCACTCAGGCTGGAAGGGAGAAGAATGTATGTCATGAGAGTTGAGTTATGATAGTATACTCGGTTTTATTTATTATCGAACTACAATAATAGTAGCTAGGCTGAACGTGTATGATGGCACAATATTTATCCATGCAATAGATGTGACATTCATCTTGCCATACGTCCCCTTATTTATCCCAATGCTGATTTTATTccattttacatacagtattgcCTGGAAAAAGGCTAACATAATATGTATGGTACTGGTACGTACATTTGCTTAGTAGACCATATACCCTCAAAGATGATTTTGTTGTTTTTACTTTAATTGTAAATATGTTCATTTGGTTTTCCTTCAATTACAAAGTAAAGATGAGTATAATGAGGCAAGATCTCGTAGAATTGTGTTAGAAGGGAATGTTAAACAGACTCCATTACTGTGACTTCCGAGTTGATCAAGAAAACCCTTATAATATATGTATTCACACGGTGGTCGGTGGATTGAACGTTCTTGTTGGGTTGTATCTGAAATaacaccctattacctatatagtgggCTTTGtgcaaaagcagtgcactatgtagagaatagagtgccattttagGCAGTCTTGCTCATTCTTAAATCATACCCAGAATGCACCTCTTATCCCTGCGTGGCACATCCAAGCCTTAAAACTGTGAAGAACGGACAGACAACCTCCACTACAACCCTGCAATGTGTGTTTTATTTCTCCAAGGCCGATGTGTCAGCGGCCATCCAACACAGGGGCATCATGCTCATTGAACCTGAAGTGACATGTTCCCCTCAATGTAAACAACTGGGATGAGAATGAATCATTAGTAGTGTCTTATATAAAAAATAAGACATATGTTTGGTCATCGGTTCCCCCTCAGATATTAGGAACATGATGCCTCTGATCCCACTCCCCTCGACTCAACAGCTGCAAAATCATCCATGTTGAATGTGTTTCCCACAAGATAAATAAAATTATAAATACATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446429 lncRNA upstream 104628 19492797 ~ 19493656 (+) True G1266041
TU1446269 lncRNA upstream 301872 19295932 ~ 19296412 (+) True G1265889
TU1446121 lncRNA upstream 462278 19048104 ~ 19136006 (+) True G1265750
TU1446162 lncRNA upstream 485623 19111565 ~ 19112661 (+) True G1265790
TU1446045 lncRNA upstream 640222 18944085 ~ 18958062 (+) True G1265685
TU1446608 lncRNA downstream 75066 19755176 ~ 19755845 (+) True G1266153
TU1446606 lncRNA downstream 80028 19760138 ~ 19762431 (+) True G1266151
TU1446612 lncRNA downstream 87197 19767307 ~ 19768614 (+) True G1266156
TU1446615 lncRNA downstream 94045 19774155 ~ 19774960 (+) True G1266159
TU1446617 lncRNA downstream 97361 19777471 ~ 19777680 (+) True G1266161
XM_021562599.2 mRNA upstream 28760 19559053 ~ 19569524 (+) True LOC110489743
XM_021562595.2 mRNA upstream 51713 19402767 ~ 19546571 (+) False LOC110489742
XM_036944018.1 mRNA downstream 4787 19684897 ~ 19692622 (+) False zbtb14
XM_021562609.2 mRNA downstream 9218 19689328 ~ 19692622 (+) False zbtb14
XM_021562610.2 mRNA downstream 9515 19689625 ~ 19692622 (+) True zbtb14
LOC110490938 mRNA downstream 15061 19695171 ~ 19701742 (+) True LOC110490938
XM_021562611.2 mRNA downstream 28759 19708869 ~ 19714844 (+) True LOC110489746
TU1446004 other upstream 735773 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 3704120 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 3861867 15735930 ~ 15736417 (+) True G1261980
TU1441924 other upstream 3891745 15696925 ~ 15706539 (+) False LOC110489686
TU1448574 other downstream 1160185 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 2106111 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 3452749 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3697198 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 3726550 23406660 ~ 23408002 (+) True G1270652