RNA id: XM_021562609.2


Basic Information

Item Value
RNA id XM_021562609.2
length 2229
RNA type mRNA
GC content 0.46
exon number 2
gene id zbtb14
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19684897 ~ 19692622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacccagttgactactttaaaatggtggaagccgtCATTGGCAAGCTCTGTGCTATACTGGGTTAAATCCATGATGAGtcttctatctatctctatggttcTTACGCGCATAGTCACTCAATTTCTGCAGTTCCGTGCTGGCGCAGCGCGTCCTTCCGCTTATGCTCGTCCTCAGGCAAACGACACACAAAGTGTATTATTCTTTTTGCACTGCTTGACATTCATCGGAGACTTTCTCAAGGGGACAACATATTCTACCACAGAATATCAGTCCACAATGTCAGAAACAGTGAAGTACATGGATGACGAACACAAGACCATCTTCCTGAAAATACTAAATGAGCAACGGTTGGAGGGTGAACACTGCGACATTGCAGTGGTCGTTGAAGACGTAAAGTTCAGGGCCCACCGCTGCGTGTTAGCGGCGTGCAGCAACTACTTCAAAAAGCTGTTCAAGAAACATGAAGTCGACAACTCCTCAGTCATAGAAATTGACTTCATCCGCTCAGACATCTTCGAGGAGGTGTTGAACTACATGTACACAGCCAAGATTACTGTGAAGAAAAAGGATGTGAATTTGCTGATGTCTTCGGGCCAGATACTCGGAATCCGATTTCTGGACAAACTCTGTTCACAGAAGCGTGATATGTCCACTGAAGAAAATAATGTCCATAATGCCAAACCATTTCCCTATGATATTGTCAAAATGGCTCTCCCTACTGATGACCCTACATTGGGCCAGGAGAACGACGTGCAGGTGCTAGGTGACCATGATGACACTCCCACTGACGACCTTGTGGAAGAGCCGACGGCCAATCACGACTTGGACAAATCGCCAAACACGGCGTTGAGAGTGCAGGAGGCCATTCTCAAAGAGCTGGCCAATGAGGACGTGCACAAGGTGAGCTGCTACGACCAGGACGTGGAGCCCATGGACACGGAGCCAAAAGACCTGGCGGGTCACGCCACCACCACACTGACGTTCGCTGACAGCATCGGCGAGGTGAAGGACGAGCAGCCCCCTGGGTGGTCCACATCCACGACGGACATGAAGTTCGAGTACCTCCTCTACGGCCACCGCGAACAGCTCGCCTGCCAGATCTGTGGAAAGACCTTCATCGACGAGAACCGTTTGAGGAAACACGAAAAGCTGCACTCGGCAGAACGTCCATTCATCTGTGAGATCTGCAGCAAAGCCTTCACTACACAGGCCCACCTAAAGGAGCACCTGAAGATCCACACAGGCTTCAAGCCCTACCGCTGCGATGTATGTGGCAAGTCCTTCATTCGAGCACCCGACCTTAAAAAGCACGAGCGGGTCCACAGCAACGAGCGTCCCTTCGGCTGCCAGATGTGCGACAAGGCCTTCAAGCACAAGTCCCACCTGAAGGACCACGAGAGGCGCCACAGGGGCGAGAAGCCCTTCGTCTGCGGCTCGTGCACCAAGGCCTTTGCCAAAGCTTCGGATCTAAAGAGACATGAGAACAACATGCACAGCGAGAGGAAGCAGATGCCGCCCAGCTCCCTGCAAACTGAGACTGAACAGCTGCAGGCAGCAGCCATGGCCGCTGAGGCCGAGCAACAACTGGAGTCCATAGCGTGCTCATAGCACACAACATTTGTACCTCACTTGTCATAGACAATATGAGAAGAATCTGAGTTTTTCGATTATGTTTCATTTTGTATTTTCTTTCGGGAGGCCTAAATACTCCAATAATTACATAGATTTGATGTTGAGAATTTTTCTTGAGGATGTAGTGGAGTAAGATCAGATTTGAATGCGTTCATATATTTTCAGACTTATTTCATGTAATTTAGGTTTTCTTGCACTGTTCTGTGGTATGACATCTTTTTCTTGATTTATATTGTAAATGgttaaaatattttgttttggTAGGAATGATCATACCAAATGTGTTTGTGTAAATTTTATGGCAGCCTTATGGACAAAAATGCTCTGACTACTGCCTCTACCTGGTTTTGGTTGTCAATATATTAGTGCTGTTATACAGTACTGGTTTTATAATGAAAACTGGAAATAAAATGTTTGATTTGTAAAATGTATGAAAAAGAATGGTTACAAACTACTACATGTTTGACGGTTAAATATTCCattgtgttacacacacacacacacacacacaactcttaGTGTAATTGACATGTACATTTAGCACATCAAAATATGTGTTGCTTTAATAAAAAATGCTACCCTCAACTGCCAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446429 lncRNA upstream 195672 19492797 ~ 19493656 (+) True G1266041
TU1446269 lncRNA upstream 392916 19295932 ~ 19296412 (+) True G1265889
TU1446121 lncRNA upstream 553322 19048104 ~ 19136006 (+) True G1265750
TU1446162 lncRNA upstream 576667 19111565 ~ 19112661 (+) True G1265790
TU1446045 lncRNA upstream 731266 18944085 ~ 18958062 (+) True G1265685
TU1446608 lncRNA downstream 62554 19755176 ~ 19755845 (+) True G1266153
TU1446606 lncRNA downstream 67516 19760138 ~ 19762431 (+) True G1266151
TU1446612 lncRNA downstream 74685 19767307 ~ 19768614 (+) True G1266156
TU1446615 lncRNA downstream 81533 19774155 ~ 19774960 (+) True G1266159
TU1446617 lncRNA downstream 84849 19777471 ~ 19777680 (+) True G1266161
XM_036944016.1 mRNA upstream 9218 19598284 ~ 19680110 (+) False epb41l3a
LOC110490938 mRNA downstream 2549 19695171 ~ 19701742 (+) True LOC110490938
XM_021562611.2 mRNA downstream 16247 19708869 ~ 19714844 (+) True LOC110489746
XM_021562613.2 mRNA downstream 33958 19726580 ~ 19750106 (+) False LOC110489748
XM_021562614.2 mRNA downstream 33958 19726580 ~ 19750106 (+) False LOC110489748
XM_021562618.2 mRNA downstream 34344 19726966 ~ 19750106 (+) False LOC110489748
TU1446540 other upstream 9223 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 826817 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 3795164 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 3952911 15735930 ~ 15736417 (+) True G1261980
TU1441927 other upstream 3985054 15696925 ~ 15704274 (+) False LOC110489686
TU1448574 other downstream 1147673 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 2093599 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 3440237 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3684686 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 3714038 23406660 ~ 23408002 (+) True G1270652

Expression Profile