RNA id: XM_021562618.2


Basic Information

Item Value
RNA id XM_021562618.2
length 4099
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC110489748
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19726580 ~ 19750106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCTTGCTACATAATTGCCCTGTCGGCAATGGAGTTCATGGGTGGGTCGTCTGAGTGGGCCTTGGGTATACGTGTTGGACTGTCACCTTTCTTAACAACTTACATATCTATTCTTCGATGTGTAAAGAGCCTTGGACTTTGTATCGCAAGATGAGATGCTGACTCCTCTTGGAAGATTGGATAAATACGTGGCTAGCGAAAACATTTTTAACAGACAAATGGTGGCACGAAGTTTGTTGGACACACTTAAAGCTGTAAATGAGGATGAGCGGGACTGTATCACTGTCTTGGAGAGAGTGGGCCGACTGGCCGATGACTCAGAGCCCACTGTAAGAGCAGAGCTAATGGAGCAAGTTCCTCACATCGCCATTTTCTGTCAAGAGAACAGACCTTCCATTCCGTTTGCCTTCTCTAAATACTTGCTACCGATCGTCGTGAGATACCTGGCTGACCAGAACAACCAGGTCAGAAAGACCAGCCAGGCAGCCCTGCTCGTACTGCTGGAGCAGGAGCTGATTGAGAGGGGGGACATTGAGACCCTGGTGTGCCCTGTCCTGGTGGACTTGACCGCCCCGGACAGCAACGACGACGTCAAAACAGAAGCCATGGCCATCATCTGTAAGATGGCCCCCATGGTGGGCAAGGACATCACCGAGCGCCTCTTCCTGCCCCGCTTCTGTGAGATGTGTTGCGACTGCAGGATGTTCCACGTACGCAAGGTTTGTGCAGCAAACTTTGGCGACATTTGCAGTGTTGTCGGAGGAGATGCGACAGAGGAACTCCTGCTGCCCCGCTTTTTCCAGCTCTGCTCGGACAACGTGTGGGGGGTGAGGAAGGCCTGTGCTGAGTGCTTCATGACCGTTTCCTCGTCCACCTCGCAGGAAGTGCGCAGGACCAAGCTCTCCTCGCTCTTCATCAGCCTCATCAGTGACCCCTCCCGTTGGgtgCGTCAGGCTGCCTTCCAGTCACTGGGCCAGTTCATCTCCACGTTCGCCAGCCCTAACAGTGTGGGCCACTACttcagagagggggaggtgggcgAGTGTTACTGTGTCCACCCACAGAACAGTACTGAGGAGAAACCACGGAACCCGGAGACTACAGACCTCTCCCTAAGGGCTAACACAGAGAATTACTCTCAGAGGCAGGGGGAGGACATGCCTGCATGCACAAATGGCAACCAAGAGGAGGGTTGTCCACAACAGGACTGCGTTTCGACAGGCCACCTGGGGGAGGGGGTGTTGTGCCGGACAGAGGAGGTAGGAGGAGTGGATGTGgcagaggaggggggtggggagcAGGCGGCAGACGGTGGACCGTGCTGCGAGGATGCCGACATAGTTCCAGAGTGCCTCTGTGGCGAGAAGAGCAAGAAGGAGCCTTCCTCGCTAACCCCCGACTCCTCCGACACAGTAGGGGCTCGGGAGGAGGAGGAAGCCCCTTCAGGGGAGACTGAGAATGAGCCACAGCCACCTGAGAAGCACACAACCTCTAATGAGAAGGATGACTCGCCAGCAGACATATCTGAGCCTTCATCTTTGTCTGAGCCAGTAGAGGAATCCCCCTCTGTCAGTCCTCAGGACAGTATTCCAGAGCAGGAGCTCTACAACTCCTTCCACTTCTGGAGGATGCCCATTGCTGAGATGGACCTGGACATTGAGCTGCTCCAGCATGGGGAAAGTTGCCAGCaggagtctcccagtcccagtcaCGGCAAGACTAAGGCCTCGGCACCCGTCCTGGACCGGAAACAGCTGGAAGAGTTGATTGAAAACCTGGAGCCTCATATTGATGACCCTGACGTGAAAGCACAAGTGGAAGTCCTGACGGCTGCTCTGAGAGCCACCACCATGGACTCTCACCTAGAGGATGCCTTTCTGGAGCCCCGGGACAGCAAGGGGGGACACCACCACGACAACCCCTTTGGAGTGCACCAAATGCCCCTCATAGGAGACCACTCAGACATGGAGAGCCGAACCTCGACCCTGCAGATAAGCCACGGTGATGACTCTGAGTTGAGCGACAGCAGCTTCAGTCCAGAGGATGAGAAGAAATCCAAGCATCAGGACGTGATCCCCCAGGCCCTGCTGGACCAGTACCTGTCCATGACAGACCCTTCCAGAGCCCAGACGGTGGACATGGAGATCGCCAAGCATTGTGCCTACAGCCTGCCCGGTGTGGCCATGACCCTGGGCAGACAGAACTGGCACTGCCTCCGGGATACCTACGAGACCCTGGCCTCCGACATGCAGtgGAAGGTGCGTCGGACGCTGGCCTTCTCCATCCACGAGCTGGCCCTGATCCTGGGGGACCAGCTGACAGCAGCTGACCTGGTGCCCATCTTCAACAGCTTCCTCAAGGACCTGGACGAGGTGCGGGTAGGGGTCCTCAAACACCTCTACGACTTCCTCAAGcTGCTGCACCAGGAGACGCGGCGTAAATACCTGTACCAGCTCCAGGAGTTCCTGGTTACAGACAACAGCCGAAACTGGCGCTTCCGATCAGAGCTGGCTGAACAGCTGGTGCTGCTACTGGAGTTGTACAGTGGTCAGGATGTGTATGACTACCTTCGTCCCCTGTCCTTCAGCCTGTGTACGGACCGAGTGTCCTCTGTACGCTGGACCTCCTACAAACTGGTGAGTGAGATCATCAGGAAGGTGGCGTCGTGCCAGGTGCTGCTGGCAGACTTCCTGAGTGAGCTGGTGGACAAGTTCTGCCACTCCCATAAGTGGTCGGGACGACAGGCCTTCACCTTCGTCTGTCAGCTGGTAATTGAGGATGACTGTGTGTCGTTGGAGCAGTTCTCGGAGCACTTGCTGGCCCCTCTGTTACAGCTGGCCTCTGACCCCGTGGCCAACGTCAGGGTGCTGCTGGCCAAGACCATCCGCCAGAGCCTGATGGAGAGAGAGTACTTCCTGCATTCTGCCAACTCCCACCAGGAGGCGCTGGAGCAGACCCTGGTGGCTCTGCAGATGGACCTGGACAAGGACGTCAAGTACTTTGCCAGCGTTCATCCTGGGAGTACACGCATCAGCGAGGACGCCATGAGCACCACCTCCTCGACCTACTGAGCCCAGAGCACTCCCACCCATCTCTCTAAACACACACTCCATCTGCTCTACTGAACTCAAGCCAGGTAGGGGCTGAGGGCCCTCTTCTACGGGCACTTAGACTTCCATACATACAACCACAAGCAAAGGACCTGCGCAACAACACAAGTTGCCCAATGCAGTACAGCACAACTCGACTCACTAcaacctattttttttttttttttttgtggtttgattatatattttttgccacAGAAGCCTTAAGTGTCTTCCTTAAACGTGAAAATACTTGAATGTCCAGATGGATTTGGTGAAAAACACAATGCATGGAAAGAAACGCACAGGAAACGGAGCTATAAGGACCATTTCTCCCCCCCGGCTCCTCTCGTTCTCTCACGATAGAATCCTCCCGACTTAGTGGAAAAGCCAGTATCTCACAAGCTTTATGGAAGCACATAGCAGGATGACTCTATCCAACTCAAAATGTTTAAACAATGTTTCTGTAATTGCTTTCCTCCTTTTTGATACTGTATCCTGCATATCAACAAAAAACATCTGTACTATCACAGCCTGGCAGTGGGGGAGCTGTCGGTGGGAAATGCACAGTTTGGAATACAGGGCTCCTGCCTCCATTGTTTTAACTCTAGTGCAGCACATTGTTGTACCCATAGACAGAGGTCCACCCCCTGGCATGCAGGGGGGGTCCTGTTGTCAATGAAAAATAactattgtattttttattaataTTATGGCTGTCTGTTTTGCGGTGTTTAAGCAAGCAGAGATCCAATTGTAAAAGGTCAGCACACACTCACTTGAAACGGGGTATTTTAACCTGAGAATAAAATactgcgaccccccccccccccccaccccttccgtTCTCCTTTTTGCTttgtccctcccttctctcccttatACCCTACCTGTACATATCTCTAGTAACCTTTTTCCATTTTGATCATGAatagaattgtgatacaatttTGTTCTGTTTTACCTTTCTCAAcatgaaatgaaataaaaagcAGGCACTAAAACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446429 lncRNA upstream 233310 19492797 ~ 19493656 (+) True G1266041
TU1446269 lncRNA upstream 430554 19295932 ~ 19296412 (+) True G1265889
TU1446121 lncRNA upstream 590960 19048104 ~ 19136006 (+) True G1265750
TU1446162 lncRNA upstream 614305 19111565 ~ 19112661 (+) True G1265790
TU1446045 lncRNA upstream 768904 18944085 ~ 18958062 (+) True G1265685
TU1446608 lncRNA downstream 5070 19755176 ~ 19755845 (+) True G1266153
TU1446606 lncRNA downstream 10032 19760138 ~ 19762431 (+) True G1266151
TU1446612 lncRNA downstream 17201 19767307 ~ 19768614 (+) True G1266156
TU1446615 lncRNA downstream 24049 19774155 ~ 19774960 (+) True G1266159
TU1446617 lncRNA downstream 27365 19777471 ~ 19777680 (+) True G1266161
XM_021562611.2 mRNA upstream 12122 19708869 ~ 19714844 (+) True LOC110489746
LOC110490938 mRNA upstream 25224 19695171 ~ 19701742 (+) True LOC110490938
XM_036944018.1 mRNA upstream 34344 19684897 ~ 19692622 (+) False zbtb14
XM_036944027.1 mRNA downstream 18847 19768953 ~ 19772377 (+) False LOC110489750
XM_021562621.2 mRNA downstream 18848 19768954 ~ 19773398 (+) False LOC110489750
XM_021562620.2 mRNA downstream 18849 19768955 ~ 19773398 (+) True LOC110489750
XM_021564275.2 mRNA downstream 302523 20052629 ~ 20055980 (+) True LOC110490828
XM_021562632.2 mRNA downstream 338670 20088776 ~ 20093865 (+) True gcm2
TU1446540 other upstream 46861 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 864455 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 3832802 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 3990549 15735930 ~ 15736417 (+) True G1261980
TU1441927 other upstream 4022692 15696925 ~ 15704274 (+) False LOC110489686
TU1448574 other downstream 1090189 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 2036115 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 3382753 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3627202 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 3656554 23406660 ~ 23408002 (+) True G1270652

Expression Profile