RNA id: XM_036944027.1


Basic Information

Item Value
RNA id XM_036944027.1
length 1419
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110489750
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19768953 ~ 19773398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATGAGTAGAAAAATAAAATGCAACTCACGAGCTTCCGTAGTCAACAAACTGATGAAGGAAAGGTCTCCTGAAACCAGTAACGGCAACATCTCACTACATTTTAGCCAGTGAGAACTTAAATATTAATAATTGTTTCATTACATTATTAGTAGACTACACAGCAGAGCTGCCACTGGACCAGATGGCTGCGAAAATCAACGAGGCGCACGACCACATTGCCAAGGCTGAAAAATATTTAAAGactagcttcatgaaatggaagCCTGACTATGACAGTGCTGCATCAGAGTACTCAAAAGCAGCTGTTGCCTTTAAAAATGCCAAGATGCTTGAAGAAGCGAAGGAGGCATACCTGCAAGAGGCAGAGGCACATACCAACAACAAAACACTTTTCCATGCAGCCAAAGCACTTGAGGCAGCTGGTATGATGCTCAAGgACATGCAGAGGATACCAGAGGCTATCCAGTATATTGAGAGAGCAAGCATGATGTATGTAGAGAATGGCACACCAGACACTGCAGCCTTGGCCCTCGACAGAGCTGGAAAGCTAATCGAATCACAGGATCTAGCAAAAGCAGTGGATCTGTACCAGAAAGCTGCATCAGTGTTTGAGAATGAAGACCGTCTACGTCAAGCTGTAGAGATGCTGGGGAAAGCATCAAGACTTCTCGTCAGGCAACACAAGCTTGATGAAGCAGCAGTGTCGATTCAGAAGGAGAAGAACATGTATAAAGAAATAGAGAATTACCCAACGTGTTTTAAGAAAACCATTGCCCAAGTGCTAGTCCACCTTCACAGAAATGACTTCGTAGCAGCAGATAAATGTGTTCGAGAGAGTTATAGTCTGCCAGGCTTCAGTGGGAGTGAGGACTGTATTGCCTTGGAGCAGCTCCTGCAGGGCTACGATGAGCAGGATGAGGACCAAGTGCACTGCGTCTGTAACTCGCCCTTATTCAAGTACATGGACAATGATGTCTTTAAAAGGTATGGAATCATGAGCTGTCCTTTCCTTATGAAACCTTTCTCCTAGCCACCCCATAGATGCATTTCCAGGCTAGCCTGAATAATGCAAAGTAATTTATTAATAGAAACAATAGCAGTCCAACTGCTTGCTTACCTGCGTCACCCATCTAGACCCTGCTTTCTTGTTGTTTTGTAAGATTTATTATATTTTACATTTCTTTAGAGCTATTTCTTAAACCTCTCCTGATCAAttccagaaagacacacacacctgactcaaACTAACCAAGGTTTTTCTGATTAGTTCATTAGTTGAATCTGCTGTGCTAGTTTAGGAAGAGATCAAAAACATGGAACTGGCTTTGGGTACTCAATAAGAGGTTTAGGAAACACTTCTGAGAAACAAATACTGTAGAGACAACTTGCCATAACCTGACCACAGTGCCAATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446612 lncRNA upstream 339 19767307 ~ 19768614 (+) True G1266156
TU1446606 lncRNA upstream 6522 19760138 ~ 19762431 (+) True G1266151
TU1446608 lncRNA upstream 13108 19755176 ~ 19755845 (+) True G1266153
TU1446429 lncRNA upstream 275297 19492797 ~ 19493656 (+) True G1266041
TU1446269 lncRNA upstream 472541 19295932 ~ 19296412 (+) True G1265889
TU1446615 lncRNA downstream 1778 19774155 ~ 19774960 (+) True G1266159
TU1446617 lncRNA downstream 5094 19777471 ~ 19777680 (+) True G1266161
TU1446614 lncRNA downstream 6323 19778700 ~ 19778951 (+) True G1266158
TU1446619 lncRNA downstream 8694 19781071 ~ 19781416 (+) True G1266163
TU1446620 lncRNA downstream 9108 19781485 ~ 19781805 (+) True G1266164
XM_021562613.2 mRNA upstream 18847 19726580 ~ 19750106 (+) False LOC110489748
XM_021562614.2 mRNA upstream 18847 19726580 ~ 19750106 (+) False LOC110489748
XM_021562618.2 mRNA upstream 18847 19726966 ~ 19750106 (+) False LOC110489748
XM_036944022.1 mRNA upstream 18847 19726971 ~ 19750106 (+) False LOC110489748
XM_036944023.1 mRNA upstream 18847 19727709 ~ 19750106 (+) False LOC110489748
XM_021564275.2 mRNA downstream 280252 20052629 ~ 20055980 (+) True LOC110490828
XM_021562632.2 mRNA downstream 316399 20088776 ~ 20093865 (+) True gcm2
XM_021562633.2 mRNA downstream 360380 20132757 ~ 20146308 (+) False mak
XM_021562637.2 mRNA downstream 360382 20132759 ~ 20146308 (+) False mak
XM_021562639.2 mRNA downstream 360382 20132759 ~ 20146308 (+) False mak
TU1446540 other upstream 88848 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 906442 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 3874789 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 4032536 15735930 ~ 15736417 (+) True G1261980
TU1441927 other upstream 4064679 15696925 ~ 15704274 (+) False LOC110489686
TU1448574 other downstream 1067918 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 2013844 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 3360482 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3604931 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 3634283 23406660 ~ 23408002 (+) True G1270652

Expression Profile