RNA id: XM_036944034.1


Basic Information

Item Value
RNA id XM_036944034.1
length 2878
RNA type mRNA
GC content 0.49
exon number 29
gene id sycp2l
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20063092 ~ 20087189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACAGTGTTAATTACTTCACCTTGCCTTATGATAGACTGGCGTTTGCCTCCTTCTGTTGAAGACAGAGGTGAGCTCACCAGCGTCTTCCTGCTGCATGTTGGAGTGGTTGGGACCGACCCAGACGTCACGTTTAGTCTGAGATTagagGCTATAAGAACGATTAACTCGATCCTCGACAATACCacaaaagaagagaggaggaaactGAGCATGTCCAAAGACCATTGTCTACTCCTtgAGCAATTTGCAAAAGTCATTCTCAATGTGGGCGACTATGAGATGCAGGTGGCCCTATCCGAAGCACTCTGTCGAATGACCATAAAGAGGTCGAGGAAAGAGCTGACCAGCAAGTGGTTTGCCAACCCAGTTTTTGCAGAGGGCTTCAACGCAATAAACGATACAGAATTTGAGATAGACTGCAGAACTTTTCTCAATGACTTGAACAGCTATTTTGGAGATGAAAGAAGGGTGTTCACGTTCCCCTGCATCTGTGTGTTTCTTGACACCACTGAGCTGTTCATGCCAGAGGATGAGAAACTGGAACATTTCTGGGTGGACTTCAACCTAGGAACGTCCTGTATCAGCCTCTTTGTCAACAACCCcgagGGTTCACTGTGGGAATCAATCCATTTGCTAAGAGCAGACGTCTTTAGGTTTAGTGTGTGTGACTGTGATAATCAGACCATTCTGACTGTTCACCTGTCCAATCCCCTCACCTATCGCATGACCAAGGGAAAGATGGTCCAGATCCTCTTCGATTCCAAGCATGACATCCTGGACGCTGCCAAAAGGGTCTTTGAAAGCAAACGACTACTGCAAAGTGTACGTTCAGATGACCAGCCATCGATACAACACGTCATGGAACCTTTGCAATCAGATCTTGACGTGCTAGCTGCATTGGAGACCTCATCACTGTCCCCTACTCTGGCAACTGCAGGCAGCACAGGGATCCCTGCTGTAAACCAGACCAGTCTGGCAACAACTCTGTCTCAGGAAAGAATTGAAACTTCACCGGAGGACATATTCGAACTGTGTGCCAGCTCTGACACTGAGGTGGCCAGAGCAAAAACGAGGCTCTTCagcactcagtctctctcctctggcgGGTCAACACACTCCACCCCAACCAACAAGGAGAAACGGAAGCAAAAGTCTAAATCAAAagactctcctcctccccctgctgaGGCTGGCAGCAGTGTGATCCTGTCCCAGCGGGCCAAACACGACTACACCAGGAAGAAGCCCAAAACCAAGAGCAAACTGAAGAGTGAGCATGCCACGTCCCGACTCCCCTCACACCCACTCATTCTGTTTGAGTGCTCTGAGCTGCGTTGGTCTAGTAGACACCCTGCTGTAGCCcgtctccccctcactctctctacagtTCTACCCCTGTCCTCTCCCAGCAGTGCAGACGAGGCCTCCCCTGTCAAGCACCGTACACCAGCATGCAGATCAGCGGGGGGAACACCAAGTACAAACATTGCAGAACGGCTATTTGACAAGCTCAAAGAGGAAGAATCTCTGGAGTTTCCTCCTCCGTCCAACCTGATATCACGAGATTCAGGCTTCCGTGATGTGACTGGGGAGGACTGGGACGAATCTGTGTTTCCCCGAGAGGAACAAGATGCATCTACACCTACTGACCATGTTCCCAATCAGGAGGCTGGAATTCATAGGAAGAGGCCTTGGGCCTCAGCAGAGTGTGCCGACTCGGGAGGTGCAGCGGAGAAGAAGAGTGTGCCGCTAGAAAGTGATCCAAGGCAAAGACCCAGGGCCTTCTTTCCTTCAGAAACTCTCGAGGAGGCTGCTGAATCAATGAGCAGAGTGCTGAATGAGGAGGTGGAGTCTGAGATGGAGATGGGCTCTGGAGTCATCGCTGCTTTCCAGACCTTCAAGAGCCAGCTGAGAGCGCACTTCTCGTCCAGGTACAAGAAAATTGAAGCCCGCTCCCTGCAGTCTCTGATGGACTGTCAGAAAAACGTCACTTCTCTCCTGGGTGCTGTCCATGACAGCAGGCTGGTCCACCTGGAGCGCTTCCAGGCCACCGTAGTCCAGGAGCTGGGCCGCCTGGAGAATGACTGCATCTCGCTCAAAGAGATTGAGTGTGAAACTGTGAACTTTTGGCAGAGCGAGTCTCAGTCCGTGCGGTCGTTCTGTGACCGACAGCAGCAGAGGTTAGAGTCGCTAGGAGAGCCCAGAGATGGCTGGAGAAGCAGCATGTCACAGAGGGAGGAGGCGGCAGCACCACcggaACCTCCAAAGTAGAAAGCCGGTGACAAAGGAAATAGATAAGACTCTCCAGGTCCTGATGAAACCAACACCACTTTGGACCTTTATGCTGACATTGAACCATGAGTGACGTCGTACAGACGCGTAATGGCTGATAGACCATGACCAAAGTTCTCACACAGGCAATGACCTACcttgcaatttttttttctgccATTGTTcaaaatacactcaattagagaAAGGATAATAATAGGCTGATGAATTTCAGGGACTTGGTTAGACATCAGAGAGCAAGGCAGACCATGCGTgtttattctttttttaaataacttTTGTCATGTTTGTCGATAGCCACTCAGACATTCAGTGATTGATTGAGAAATGCAATGTATGAAGTCTACGAAAGTCGTCAGGAAAgcctgtaaaatatattttttctaaaGAACCAGTCAAATGTTTACTATGTTTTGCACCCATAAACTTACATTcaaatacagtgggatatatcagGTAGGTTTAGCAGTGTTTCTAAGGCATCATTAGTTGAACAATGATTTGAGTGAATGCTCTGGAGGGATATTTTTGTTGAGTACATACCGGAGGCTATATTCAATAAAGGCATAGTTGTggccaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447785 lncRNA downstream 111635 19951100 ~ 19951457 (-) True G1267208
TU1447595 lncRNA downstream 120878 19941699 ~ 19942214 (-) True G1267047
TU1447594 lncRNA downstream 121983 19940825 ~ 19941109 (-) True G1267046
TU1447583 lncRNA downstream 134139 19928715 ~ 19928953 (-) True G1267035
TU1447526 lncRNA downstream 225365 19837390 ~ 19837727 (-) True G1266979
TU1447858 lncRNA upstream 3755 20089819 ~ 20090930 (-) True G1267280
TU1447872 lncRNA upstream 32007 20118071 ~ 20118297 (-) True G1267293
TU1447892 lncRNA upstream 64429 20150493 ~ 20150701 (-) True G1267313
TU1447918 lncRNA upstream 91640 20177704 ~ 20177947 (-) True G1267331
TU1447942 lncRNA upstream 123301 20209365 ~ 20209597 (-) True G1267352
XM_021562623.2 mRNA downstream 31999 19964439 ~ 20031093 (-) True gnal
XM_021562624.2 mRNA downstream 47132 19964439 ~ 20015960 (-) False gnal
XM_021562622.2 mRNA downstream 112300 19945007 ~ 19950792 (-) True impa2
XM_036944026.1 mRNA downstream 129927 19773451 ~ 19933165 (-) True LOC110490939
XM_021562619.2 mRNA downstream 294710 19760626 ~ 19768382 (-) False LOC110489749
XM_021562641.2 mRNA upstream 60219 20146283 ~ 20148723 (-) True tmem14ca
XR_002468618.2 mRNA upstream 470708 20556772 ~ 20566859 (-) True LOC110489759
XM_021562656.2 mRNA upstream 604807 20690871 ~ 20724923 (-) True bmp6
XM_021562661.2 mRNA upstream 642942 20729006 ~ 20752125 (-) False zgc:101569
XM_036944037.1 mRNA upstream 648137 20734201 ~ 20752125 (-) True zgc:101569
TU1447224 other downstream 609322 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 953735 19108559 ~ 19109357 (-) True G1266471
TU1445798 other downstream 1482929 18576539 ~ 18580163 (-) False G1265456
TU1448004 other upstream 181902 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 204286 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 872308 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 1716623 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 3627291 23713355 ~ 23717459 (-) False G1271421

Expression Profile