RNA id: XM_021562632.2


Basic Information

Item Value
RNA id XM_021562632.2
length 2427
RNA type mRNA
GC content 0.50
exon number 5
gene id gcm2
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20088776 ~ 20093865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCTGTGTGTATTCAAGTTCAACATAGAGACACAGCATAATAGCCTAATATTTTTGATGTTTCATGCATACACAGTGCTAGAAAGAAACGTTCGGGGAAACGGACATGCAGTAAGTGGAGGTCAGTGCCACGGATCAGGTGAACTGAAAGTGCACAGCGCTCAGCCTCAACAGAGCTGAGACTAGACATATTTCCTAGTCCTGCCTCCTCCTTTACATAGACGAGACAGCCCTTACCTACAGTCATTCACTTTGCTATTCCGGTGGCATCTCGTGACACACTCTCCAGGACACAAGGGAATTTTGGATTAACACCGAGAAAAGACAGAGGAAATCGGATAAAGATCATGTACTTCTGGACATATATTCTCTAATTCTTTTTCATTTTTAGCGTTGTCTGTCATATGCTTTATTTTTGACAAAGGAAGTGATTTCGTAAGGTTCGCGGCTACGGGACGGTACCTGTATTGGTGGGTCCTGCTATGAGTCAAATTCAAAACCGTAAAATTGTGAGATTCTAAGATGTCAAAGTCATCGGATCAGTTTGAAGACCCCGACTGTGTTTCTTCCTTTGGTATGAAGTTAACGTGGGATATCAACGACCCAAAGCTGCCTCAGGACACAAAGCAGTATGACGCTTTCCAGGAGTGGACGGATGGGTATGTTCGTTACATCTACACCGGCGAGGATAAGAACGCACAGCGGCACCTGAGCGGATGGGCCATGCGAAACACCAACAACCACAACTGTCAGATTCTCAAGAAGTCCTGCCTCGGCGTGGTAGTCTGTGGCCGAAATTGCACGCTGGCTGACGGAAGCAAACTCCAGCTCCGACCGGCTATCTGCGACAAAGcacgacaaaaacaacaaaAGAAGCTGTGCCCCAGCTGTAACTCTGCCCTGGAGCTGATGCCATGCAGAGGACACAGTGGCTATCCCGTCACCAACTTCTGGAGAATAGATGGAAAAGCTATATTCTTCCAGGCGAAGGGGGTCCATGACCACCCCAGACCAGAGAGTAAGTCTGAGACGGAGGTCCGGAGGAGTGCAGTGAAGAGGAGGATGTCCTCTCCACACTTCTCCCAGAAGAGGAGGTTGATGGAGACAGATACCGGGAGATACCACGACCTGGGCACTCCTTTCCCCAACCTGCACCAGCTGTCCTGCATGGAGGGCCCAGACCGCTTTAGCATCATCGCTGAGTCCAACTTCCCCATCCAGACCCAGCACTACCCTCCCTTCCAAAACCCTGAGCCCTACAAGTTTGCCTATGATGCCCACACCAACATGGGTGAGGCCCCATCCACACTCCAGAAGCAGGCCAACCACCGTCTGTACATGCCCCGGCCTCCGTGTGGCTACGACTTTGCTGTGCCGAGCTATTTAGGCTCGGGCTCCTACACAGCCCTCTATAAGGACCCCAGTAGCCCCCAGGCGGAGGCCCCTGAGCCCAGCAAGGTGAGCTCGGGTCTGGGTACCAGCACGGCCACACCCCACACCACCGGGGTCCTTTCGGGCCACGACCGCAACAACTACGACACGACCAGCAAGCACCACGGCTGGAAACAGATCTTGGGCAAGGGGACGTACAGCGAGCGGGGCGAGTACGGACAGTTTCCTGGCAACaccaaccaccactactacaacagtGAGTACCCGTGCAGGTACCCTGGCCCAGCGCCAGCCACGCCCGCTGCCCTGCagaccatcatcaccaccaccaccaaagtGTCCTACCAGCCCTGCCCCAAGTCCTCCGTGGTAAAGTACGGCGACAACATCTACGACGTCAAGGGCCTGCCCAGCTGCAGCTCCCTGCTCGAGGACACCTCGCCCACCTCTTACTCCGATCTCAAGATTCCTGAAGATTCTGGGGTCATCAAGTCTGCGCTGTCGTACCAGCCGGAAACCCTGCCAGCTAAAATCGAGAGGGCTGAGAACTTTGACACTTACCGTTACGGCAACTACGCGTCCAACAGCTATCCCGACAGGGTTTCTCATCCATTTAGATACGACGGAGGGGACTACTAATTGAAGCGGAAGCCACCAAAACAAAGACTGTGATTTGATAGTTATGCAAATGATCAGAAAGAACGCTTGGAACAGACTTTCTGCCACCTTTTATCAGGTTTGTAAAGCTCTATTGTTATTTATATATTTGAGGTGTTGGATTGCATTTGGACTGCTAGTGATGACACTACGTTGAGTCTAGACTCTTCTAGGATGTTCCCAACATTTCCCCATTTAATGCATAAGAAAAAACCACAAAGTAGTTATTATTGCCctttggatttaaaaaaaaaatcggaTTAAATGTGTTTGTAGAATATGAATAATATGTATTCTTAAGGTATTTTGTCTGTTACAATATCACATCATGTTCCTATGGCACTGAAATAAATGTTCTATAGACTGGGAATGGCCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K21598 GCM; chorion-specific transcription factor GCM

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447622 lncRNA upstream 91241 19979965 ~ 19997535 (+) True G1267070
TU1447616 lncRNA upstream 117917 19969249 ~ 19970859 (+) True G1267065
TU1447615 lncRNA upstream 118987 19968402 ~ 19969789 (+) True G1267064
TU1446730 lncRNA upstream 155673 19932773 ~ 19933103 (+) True G1266262
TU1446727 lncRNA upstream 161577 19926988 ~ 19927199 (+) True G1266259
TU1447778 lncRNA downstream 92404 20186269 ~ 20186481 (+) True G1267204
TU1447948 lncRNA downstream 121192 20215057 ~ 20215343 (+) True G1267358
TU1447959 lncRNA downstream 129542 20223407 ~ 20223643 (+) True G1267369
TU1447981 lncRNA downstream 154175 20248040 ~ 20248275 (+) True G1267391
TU1448042 lncRNA downstream 196576 20290441 ~ 20290708 (+) True G1267451
XM_021564275.2 mRNA upstream 32796 20052629 ~ 20055980 (+) True LOC110490828
XM_021562621.2 mRNA upstream 315378 19768954 ~ 19773398 (+) False LOC110489750
XM_021562620.2 mRNA upstream 315378 19768955 ~ 19773398 (+) True LOC110489750
XM_036944027.1 mRNA upstream 316399 19768953 ~ 19772377 (+) False LOC110489750
XM_036944021.1 mRNA upstream 338670 19728208 ~ 19750106 (+) False LOC110489748
XM_021562633.2 mRNA downstream 38892 20132757 ~ 20146308 (+) False mak
XM_021562637.2 mRNA downstream 38894 20132759 ~ 20146308 (+) False mak
XM_021562639.2 mRNA downstream 38894 20132759 ~ 20146308 (+) False mak
XM_021562634.2 mRNA downstream 38895 20132760 ~ 20146308 (+) False mak
XM_021562635.2 mRNA downstream 38895 20132760 ~ 20146308 (+) False mak
TU1446540 other upstream 408671 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 1226265 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 4194612 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 4352359 15735930 ~ 15736417 (+) True G1261980
TU1441927 other upstream 4384502 15696925 ~ 15704274 (+) False LOC110489686
TU1448574 other downstream 746430 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 1692356 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 3038994 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3283443 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 3312795 23406660 ~ 23408002 (+) True G1270652

Expression Profile