RNA id: XM_021562639.2


Basic Information

Item Value
RNA id XM_021562639.2
length 3686
RNA type mRNA
GC content 0.48
exon number 15
gene id mak
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20132757 ~ 20146308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGGGAAAAAATAGTTTTGAgctgtcatccaactcggaattccaattcGGATATTCGGGCATCTTTCTAAAggtctgacctgaagatcactggcgCCATGATTTTACCCCGTTTTTTTCTCCATAGTTCCAAGTTGTCTTGAAAATGCCAATATAaattttaaaattattattaaaaATCATTCAAACGTCGGGAACGAACTACACTTTTGTGCGAAATGGCTGGCAAACACTTACCTGAGGGAACCGAAGGCGCAGAGATAAGCCTGAAAGGTTGCCTAGGTATGCTGCTCTGTGGGTGACAAAATATGTAAAGAATAATAGCGCCATCTGGTGGCAGCGGGGCTATGATGAGGACTATTTTACTGGTATTTGGTTGACTACTTGTGTACTGTGTGCCATGCTAACGCAAATATAGAAGCCTGTGGTTTCGTCGGCCCCTGGTTAGCCTTGGTGGTAGGCCTCGACTCTGAAGACACACTCAGGCACGCGACAATAAGTCCCACAAACCATTGCGTTTCCACCCGACATCGTTGGTCTGTGTACGTTGCCAAGGAGAAGCGCCACACACCTTATCGGAACACTAAGGACGCCACTTGCATTTTATCTCAAGAAACTTCAGCGCTATCTACAAGCTCAGAAAACAGTGGGAGGAACAACACCCTAAAATGATATGCCAGCATCAGGAAGGAGTGTAACATTTGGCTGACCTCCAGTGTGGCGATCAGGAGAGAGCAATGGCACCGTTCCTGTGTGACCTGTTGTGAATCCCACCAATGAAGAACATCACATATTGACATagtgagcgagaaagagaggactGGTAGAACTATCATTTAGGAGAGAGAAGCACCCTGCAACTCCCCCAAGCCGATGATTCTGAGACAATGAATCGCTACACGCAGCTGAAGCAGTTGGGAGATGGCACCTATGGCAGCGTGCTGATGGGGAAAAGCAACGAGTCGGGAGAACTGGTGGCCATCAAGAGAATGAAGAGGAAGTTTTATTCGTGGGAAGAGTGCATGAATCTGAGAGAAGTAAAGTCCCTGAAGAAGCTGAATCATGCCAACGTGGTGAAGTTAAAGGAAGTCATCAGAGAAAACGACCACCTGTACTTTGTCTTTGAATACATGAAAGAAAATCTCTATCAGCTCATGAAGGACAGGATTCTTCCACCGGGATATGAAACCTGAAAACCTGCTCTGCATGGGCCCAGAGCTAGTCAAGATAGCCGACTTTGGATTGGCCAGAGAGATCCGCTCCCGCCCCCCATACACGGACTACGTGTCCACAAGATGGTATCGCGCCCCAGAGGTGCTGCTCAGGTCGTCCATCTACAGCTCTCCCATAGACATGTGGGCAGTGGGCTGCATCATGGCTGAGCTCTACACACTTAGGCCTCTATTCCCCGGGAACAGCGAGGTGGACGAGATCTTCAAGATCTGCCAGGTTCTGGGGACAGTCAAGAAGTCTGACTGGCCGGAGGGATACCAGCTGGCCTCGGCCATGAACTTCCGCTTCCCTCAGTGTGTGCCCACCCACCTGAAGACCCTCATCCCCAACGCCAGCACAGAGGCCATCACCCTGATGAAGGACCTGCTCATGTGGGACCCTAAGAAAAGACCCACGGCCGTGCAGGCTCTGCGGTACCCTTACTTCCAGGTGGGTCAGGTGTTGGGGCCTCGGCCCGGGAGTGAGATACGCAAGGCCACGGTGAGGACTCAATCCCGAGGCTCATCAGAGCCCAAAGGTGAGCTGCAGTCCTCTTCAGGAGACTCCTCTGCCCGGACGTCTCAGGGCAACCACCCCAAAGCTTCAAGCAGACACCACCAGGCCCCCCAACAGCCCCTCCAGCAGACAGACCATCAGATTGACCAGACATCTCCACATGGCCAAGTCATTAACTCCAATACGAAGCCATCTGTCGTGGTGGGGACTGGGAGTGAGAACAGTGCAGCGGTGGGTGTGAAGAGCGGGCGGAGGCGCTGGGGCCAGACAGTGGTAAAGACAACAGAGAGCTGGGATGAGTCAGAACCTTCTGAGACCTCTGTGTCCCACTCCAAGAAACCCAGCCTTGGAtcagaggaggagaagggccCTAAGGACCATAGTAATGCGCAATCCAAAGAGCAAAAACCGATATACTCCTTCAGCACTGTTACTAAGTTACCAAGCAATATTAAGAAGGGCCAAATGGACTCCAGTCTCCCGGGCTCCTCAGCAAGACAACATTACCTTAGTCAATCAAGATATCTGCCTGGGTTGATCGGCAAGAACTCTGTAGACAAGGAGCCCAGTGGGCCGACACTCCGAGATCTGTGGGACAACTCCACCAATGTCAACAGTAAACCCCTCGGCCCCATTGGAGCTGGTTTGTCCGTCACCAGAGTCAACGCAGAAGACACTGATAACCCTTCTGATAAATCTACAGATAAATCTGTTCTAAAAGAAAGAATACCTGATTCAGCTAAAGGAAACTTTGTCAGTACAAAGTACAATCTGTCTGGAGGTTATGTTCCCTCCTTTCAGAAGAAAGAGGTTGGCTCTGTGGGTCAAAGGATCCAGCTTGCTCCTCTTGCCGGCCAGCACACAATTGATCTTGCTACTCCTGATAACAAAAATGTCAAACCAAAACCTTCAAAGACAAAGTCCACTTCCACCACGCCCATGAGTGAAAACACTGAAGATTACGACGGCTGGAAAAGGAGGGCGGACAAGCCTCAAATGAAAGGCCAGGACTATTCTGCCCTGGGGAAAACCTCTGGCAACCTTCTGACTAGAGGTCCACCTGTACAGCCAGTCCATGGGAGGGTAGACTGGGCATCCAAGTATGGAGGCAATCGGTAGTGCATCAAGAGATGCTATTAAACCAACTCACAGGTTTAGCCAGTCTTTGCGCTAAGGAAAACCTTTTGTTGCTCTGCTCTGAATTTAACTACCCTCAGTGTATGTACTTCTGAAAGACctccaatacattattacaaCTAAGTAGCACATGTACTGGGATGTTCAAGGAGATATATACATGTTTGTTTTATACTGGCATCATTGGGTGATGTATGAAGGAAAGACATACGCCAGGAGGCCTGATCCCTGTAACTTCAACAGAAGACCCGGAGTCATCTATCGCAGTGTTttccaactccagtccttcagtAACCTCAACAGTACATACTGTTGTTGTAGCCCCGGACAAAAATACCTGATTCaacttgaatcaggtgtgctagtctTGGGCCACAACAAATATGTACttgaggaccagagttgggaaacactgatctaCTGTATGGTAATTGATGATAGACTGGCTGATAGGGCTGCTCTAAAGTATCCCTCAAAGATAACCATGTCCTGAAGCCCATTGGGTGTTGTCTGGATTGAGTCTGATGCCGAAAAATGACATTAGTCTTACAATCGGTTTTATGATACGATTAGAACCAATAATGGTGGATTTTGTATTTTAGATTTTTATAATGTTATATTCTGTTTCTATTTTTTAACTTTTGTTTACATTACTCAACTCCAATGAAATTATAAGGAAATGTTTCCTATCACTCATTGTAATCTCTTGAATAGGCACTTACTGTATCAGTGGCTAAAGAAGTGTTGACTTCAGTTATGTATTATGACAATCCACGCTTAAGATGCAGCTATTAAACACTGgccatttttttaaaccttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447622 lncRNA upstream 135224 19979965 ~ 19997535 (+) True G1267070
TU1447616 lncRNA upstream 161900 19969249 ~ 19970859 (+) True G1267065
TU1447615 lncRNA upstream 162970 19968402 ~ 19969789 (+) True G1267064
TU1446730 lncRNA upstream 199656 19932773 ~ 19933103 (+) True G1266262
TU1446727 lncRNA upstream 205560 19926988 ~ 19927199 (+) True G1266259
TU1447778 lncRNA downstream 39961 20186269 ~ 20186481 (+) True G1267204
TU1447948 lncRNA downstream 68749 20215057 ~ 20215343 (+) True G1267358
TU1447959 lncRNA downstream 77099 20223407 ~ 20223643 (+) True G1267369
TU1447981 lncRNA downstream 101732 20248040 ~ 20248275 (+) True G1267391
TU1448042 lncRNA downstream 144133 20290441 ~ 20290708 (+) True G1267451
XM_021562632.2 mRNA upstream 38894 20088776 ~ 20093865 (+) True gcm2
XM_021564275.2 mRNA upstream 76779 20052629 ~ 20055980 (+) True LOC110490828
XM_021562621.2 mRNA upstream 359361 19768954 ~ 19773398 (+) False LOC110489750
XM_021562620.2 mRNA upstream 359361 19768955 ~ 19773398 (+) True LOC110489750
XM_036944027.1 mRNA upstream 360382 19768953 ~ 19772377 (+) False LOC110489750
XM_021562643.2 mRNA downstream 6049 20152357 ~ 20165444 (+) False tfap2a
XM_021562647.2 mRNA downstream 6050 20152358 ~ 20165444 (+) False tfap2a
XM_021562642.2 mRNA downstream 7904 20154212 ~ 20165444 (+) False tfap2a
XM_021562644.2 mRNA downstream 7908 20154216 ~ 20165444 (+) False tfap2a
XM_021562645.2 mRNA downstream 9338 20155646 ~ 20165444 (+) False tfap2a
TU1446540 other upstream 452654 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 1270248 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 4238595 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 4396342 15735930 ~ 15736417 (+) True G1261980
TU1441927 other upstream 4428485 15696925 ~ 15704274 (+) False LOC110489686
TU1448574 other downstream 693987 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 1639913 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 2986551 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 3231000 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 3260352 23406660 ~ 23408002 (+) True G1270652

Expression Profile