RNA id: XM_021562650.2


Basic Information

Item Value
RNA id XM_021562650.2
length 2009
RNA type mRNA
GC content 0.46
exon number 10
gene id slc35b3
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20566636 ~ 20582807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAATGAGGTCATAGTTCGAGACGAGTCACACTCAGCGGAAGTTGTTGGCTGCTGCCAGGAGATAGCAGCAGCGGTTCGCAAGTTATCAAATGTGCTACAGGTCTTTTCGCATCAAAATCATTAAAATGTCAATATAATAGCTTAAAAACATGGATCCGTCACTTCTGGAAACGTTATAATAATCCGAATCGATTGAAGAACAACGCAGCATTCACATTTCAAACCCGGAAGTTTTGTTCAGCTAGCATGCTAGCTTGTAGCAGCTAACCAGACACAATGAGTGCCAAATTCGGCCTGATGAACTACAACAACGCCCGGAAGCACCTGTCTATCTCCATCCCGTCTTCCAGCGAGGTCATGATGTCTCCGCACATTAAGTCTGTGGAGGAGCTGAGAGTGCTAGGCATCAACCTGAGCAGCTTCAACACAGCTACCCAGTTCTGCATCTGCACGGCGGGTGTCTTCCTCTTTTACCTCATCTATGGCTACCTACAAGAGCTCATATTTTCCGTGGAGGGTTTCAAGCCCTTCGGATGGTACCTCACCCTGGTACAGTTTGGGTTCTACTCCCTGTTTGGACTGGTGGAATTGCAGCTCACACAGGACAAACGGAGAAGAATACCAGGGAAGACGTACATGATCATAGCATTTCTAACGGTGGGGACCATGGGCCTATCAAACACCTCACTGGGTTACTTGAATTATCCTACACAGGTCATCTTCAAGTGCTGCAAACTCATTCCTGTCATGATAGGAGGCGTATTCATTCAAGGGAAACGCTACAATCTGGCTGATGTATCTGCTGCTCTCTGTATGAGCCTGGGACTCATCTGGTTCACCCTAGCTGACAGTAAAGTCGCCCCCAACTTCAATGCAACCGGggtcctcctcatctctctggcTCTGTGCGCTGATGCTGCCATTGGGAACGTGCAGGAGAAAGCCATGAAGCTCCATAATGGCTCTAACTCTGAAATGGTTTTGTATTCCTATTCCATCGGTTTTGGGTACATATTGACAGGCCTGTTGGGTGCAGGTGGATTGGGACCAGCAGTGGCCTTTTGCTCTCAGCATCCTGTGACAACATACGGTTATGcattcttcttctctctcacgGGGTACTTTGGCATTTCATTTGTGCTGGCCTTGATCAAACTCTTTGGAGCCCTGGTAGCAGTCACAGTAACGACTGGACGTAAGGCGATGACGATTGTACTATCCTTTATGTTTTTCTCCAAGCCTTTTACTTTTCAGTACCTATGGGGTGGACTTTTAGTGCTGCTCGGCATCTTCCTGAATGTTTACAGCAAAAACAAAGACAAAATGAAGCTGCCATCTTTGGCGGACCTCAGGAATATGTTTCTGACCGGGAAGAAGGTCAGGCTGCTATCACAGAACGTGTAGTAAAAGGGACCTGTGGTGGGCAGGATAAACAAACATTTCTCTAACGTTCCTATCCAACGTGGACCTAATAACAGTGGGCTCCTAAGACATTCCTTGGCCACATAGCTCCACAGAAACATTCCCAGGAGGAGAAAGTGGACACGGAGCACCTGCGAGACTCTGAAAGGGAAGCTGACTCCCTAGCTAACCCAAATAGCACAGTTCTGCACTGTAAGTGACTCTATGACTTTAGCCTGAGCAAGACGAAGGGGGACGAAACGGTTGAAAGAGAATATATTGACATTTATTGAACTGATCATGTCCGAAATTGAATgcaccaaaaatatatatatcttaaaTGGCATATTTTCACCTGCATGTGCCAGAAGACAAAAACTAATGTTTTACTCAATCACTGTCTGAGAAATGTGTCTTCTCATGGTTTCTTTGTAATTTATATCCGATTGTACAAAAGACCGCTCAACAGCACAGTGACATCTTGAAGTGTGGGGCGGGCTATGCTCGGAAGTATATCAACGTGTCAACGGCCATATTTGCGAACCGTTTGTTTTGTTGAAATTGTAGCTCTTTTTACATTAAACAAACTGGGAAGTTTATCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1448349 lncRNA upstream 27158 20539428 ~ 20539735 (+) True G1267748
TU1448345 lncRNA upstream 35585 20531064 ~ 20531308 (+) True G1267744
TU1448307 lncRNA upstream 69918 20496486 ~ 20496975 (+) True G1267706
TU1448298 lncRNA upstream 78447 20488216 ~ 20488446 (+) True G1267697
TU1448296 lncRNA upstream 80155 20486494 ~ 20486738 (+) True G1267695
TU1448424 lncRNA downstream 68763 20651570 ~ 20651775 (+) True G1267818
TU1448425 lncRNA downstream 70627 20653434 ~ 20653653 (+) True G1267819
TU1448436 lncRNA downstream 107321 20690128 ~ 20690515 (+) True G1267830
TU1448446 lncRNA downstream 109977 20692784 ~ 20693031 (+) True G1267840
TU1448454 lncRNA downstream 120753 20703560 ~ 20704163 (+) True G1267848
XM_036944035.1 mRNA upstream 146136 20308647 ~ 20420757 (+) True ofcc1
XM_021562642.2 mRNA upstream 401449 20154212 ~ 20165444 (+) False tfap2a
XM_021562652.2 mRNA downstream 53787 20636594 ~ 20644188 (+) False eef1e1
XM_021562653.2 mRNA downstream 53787 20636594 ~ 20644188 (+) True eef1e1
XM_036944036.1 mRNA downstream 74407 20657214 ~ 20660349 (+) True bloc1s5
XM_021562657.2 mRNA downstream 91122 20673929 ~ 20689970 (+) True txndc5
XM_021562658.2 mRNA downstream 168377 20751184 ~ 20775305 (+) False rec8b
TU1446540 other upstream 886788 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 1704382 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 4672729 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 4830476 15735930 ~ 15736417 (+) True G1261980
TU1441927 other upstream 4862619 15696925 ~ 15704274 (+) False LOC110489686
TU1448574 other downstream 257488 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 1203414 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 2550052 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 2794501 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 2823853 23406660 ~ 23408002 (+) True G1270652

Expression Profile