RNA id: XM_021562658.2


Basic Information

Item Value
RNA id XM_021562658.2
length 2586
RNA type mRNA
GC content 0.51
exon number 18
gene id rec8b
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20751184 ~ 20775305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccGCCCGGCGACTGCACAAcaatgggagagaagagaagtgagACCGCAGCACTTAGAAAGAAATGTCCCCAAAGCTGGGACTGGAATAGATCATGGCTGAGGATGAAGCTCTGTGGCAGAGAGCGTACAGTTGACTTGACATATTTACGGTTGGCTGCCACCAAAGGGATCAGGATAACACGCAGAGAGCTTCTGAGGGTCAACGTTGGGCGGACATGTGAGGACATCATGGATTACGTGACGGTCCAGGTGGCTCCACTCTGCCCTGGTCTCCCTCGGCCTCGCTTCTCCCTCTACCTGTCCTCCCAGCTGCAGTATGGGGTGGTTATCGTCTACCACCGCCAGTGTGGTTTCCttctggAGGAGATCCAGCAGACCATTGAGCGCCTGGTACGCTCTGAGAGACACGCACGCATCGACCTGGCTGACCCTGACAgACAAGCCCCAAATGTCCCAGACTCCCTGTTCCTGCTGGAGGAGGCCGAGGGGGCACAGGACCCCTTCTTTGGGGTGATGGGCTTTGAGCACCTGCTGCCTAGTCCCTATAGAATCCCTCAGCCATGGCAGCTGATGGAGAGCATGACTCCAGAGCGCCCCATAGGGGCCAGTCCTGGAACTGCACCAGAGGACGGAGgTTTCAAATCCCCTCCTGATGCCATTACCCTGAAAGAGAAGGAGCAGCTTGTCATCGTTGCTGCTGAGTTTGAAGGAGCTGAGCTTCCTGAAGCCACTGGCAAAGAGATTGACATGCTTCTGGAGCAGCAGGACCAATTCCATGAcgagctagaagagagggaaagggagagagagggagagagaaccagggACATGGAGTCAGGCATGACCTCCATTGACCAgctGAAGGTGTCGGTGGTGGTGGGGGACAGTGTGTGGCTGCTGGACGAGGAGACCGGCCTGCCCATGGAGGTGCCTTTAGAAGTCATTCCCATGGAGATGACCCCCCCTCCTCAGGTGGCCATGCCCTCTGCCCCAGATACCTCCGAGAGAGCGGgggagtcagagagtcagtcagagagggggacggagaAAGCGGCAGAAAGTTCCTGTGgcgagCTCCCCCATATAGATGCTCCTCCTCCTATGAGGCGGGGTCGCAGGCGCCAGCTCATCTTTGCAGACCCTCAGGTGCAGATCTCCCAGGATACCATGCGGGTGCAGATCGAGGACACTAAGGCTGAGACTCTGCTCCTGTCTCAGGTGCTGATAAACTTTCCTGCCCAGAAGAAGCTCCTCCCAGCAGAGCTCTACACTGCCCCTTCTGGCTCTCTACTGCACCCTGACCTCCTGTTGCTATGGAAACAGTGCGCCGTCCTCACTACGCTTCCTCGCAccggggagagaggcagagaggagaagactgaggagGAGGGCAGCTccgagatggagagagtgaggatagaggtggagaggaagaggatggactCTAGCATGCGAGAGATCCCACGAGAGTTGCTGAAATCAGGAGGAACAGCCCCATCTGAagcatcagCCGAGGTTCTTCTAGACGTGTCCAGAGAGGACAAATCCCTCGAGCAGATCACCCCTGTCAGCAGATGGTCTCCTATGGAAGAAGCCCCAGTGCCTATGGAGGCTATAGAAGAGGAACATGTGGCTCTAccagacagagaagaggagacagacgGTAGAGGGGTCACTGCAGAGGGCCTGTTGAGTGTGGTGTCCTCGTACCTCCTGAGGTTTGGGAAAGTCACCTTTTACTCTCTGTTGCCCCTGGAGGCAGACCGCACTACTGCAGCCCACATTCTCTCCAAACTGCTAGgtattttgtgttgtgttgtgatggtCCAGAGCTGGTGTCTGCTGGGGACCTGGCTGTATGTCAGGCTGAACCCTACAGCCCCATCACCATCATCCCTGGACCACTCAGCACCGTGCAGGCCTGAGGAACACAGAGGATGTCTCCACCAGGGTTTGACTTGGACAGGATTTCACCTcagctgagtaccggcacctcaaatgttctactgcttgagctcctgttcctcttatggAATATTAGCttaaaagtattgtggagctcctgcacctaattATAAACAGTACCCAGCACGAGcaccggcacctatttcagtccaagttaAGCAGTGGTCTCCACAGGATGTGTGCTGCCATACTTTTATAACAGAGTAATAATGTTCATGTCCCAAATATCATTCGTACGAGATCATCACCTCAAACTGATTTGTAGGACACACCCAAAACGATGACCTCTTGGAGTTAACATTTTTTGTAACCTTTATAAGTGAAACCTTTTTATAAGAAGTGAAATTACTGAAGGGAAAAGCTTTTTTTATTCAAAGTtggtattttttaaattaatctATTGAATAGCGTATATATTTAATACTGTACCTAGCATATTTTTTTAATACTCATTTATTTGTCAATTGTCATACAAGTTGAAATTGTTGACAAAGTTTTTGTTTAACCTTTGGTGGTTTTTGTATCTTATCAATTGTGGTATGATGTTGCTCTGTTCTTACGTTGAAGCATTCattcaatgtattttttaaataaaatgcatGTTTACTCATTATTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1448495 lncRNA upstream 10344 20738895 ~ 20740840 (+) True G1267877
TU1448456 lncRNA upstream 45965 20705013 ~ 20705219 (+) True G1267850
TU1448455 lncRNA upstream 46516 20704330 ~ 20704668 (+) True G1267849
TU1448454 lncRNA upstream 47021 20703560 ~ 20704163 (+) True G1267848
TU1448446 lncRNA upstream 58153 20692784 ~ 20693031 (+) True G1267840
TU1448480 lncRNA downstream 2681 20777986 ~ 20778498 (+) True G1267867
TU1448526 lncRNA downstream 25936 20801241 ~ 20804762 (+) True LOC110490942
TU1448587 lncRNA downstream 127188 20902493 ~ 20902707 (+) True G1267962
TU1448590 lncRNA downstream 128960 20904265 ~ 20904519 (+) True G1267965
TU1448615 lncRNA downstream 193977 20969282 ~ 20969816 (+) False G1267986
XM_021562657.2 mRNA upstream 61214 20673929 ~ 20689970 (+) True txndc5
XM_036944036.1 mRNA upstream 90835 20657214 ~ 20660349 (+) True bloc1s5
XM_021562652.2 mRNA upstream 106996 20636594 ~ 20644188 (+) False eef1e1
XM_021562653.2 mRNA upstream 106996 20636594 ~ 20644188 (+) True eef1e1
XM_021562650.2 mRNA upstream 168377 20566893 ~ 20582807 (+) False slc35b3
XM_021562668.2 mRNA downstream 16782 20792087 ~ 20795036 (+) False nanog
XM_021562669.2 mRNA downstream 16782 20792087 ~ 20795036 (+) True nanog
LOC110490942 mRNA downstream 27274 20802579 ~ 20804982 (+) False LOC110490942
XM_021564361.2 mRNA downstream 37104 20812409 ~ 20815510 (+) True LOC110490943
XM_021562671.2 mRNA downstream 99562 20874867 ~ 20879233 (+) True LOC110489770
TU1446540 other upstream 1071079 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 1888673 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 4857020 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 5014767 15735930 ~ 15736417 (+) True G1261980
TU1441927 other upstream 5046910 15696925 ~ 15704274 (+) False LOC110489686
TU1448574 other downstream 64990 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 1010916 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 2357554 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 2602003 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 2631355 23406660 ~ 23408002 (+) True G1270652

Expression Profile