RNA id: XM_021562677.2


Basic Information

Item Value
RNA id XM_021562677.2
length 1008
RNA type mRNA
GC content 0.43
exon number 4
gene id thtpa
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20904229 ~ 20906476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAATGCAGTAAGCACCTAGGTGTCCACACTGCGCCTGCCTAAAATACTTGCGGCTGTCAGTGATTTAGTGAAAGCTCAATCAACAGTCTTGAACCTATTTTACAAGACTGTTGAATCGGTAATAGCGGTCGTTAAATGGAGAGTACAATGAGTGTGGAAGTGGAGAGGAAATTTGTCTGTGACGCTGACATTCAGAAACAATTGGAAGAGATAGGAGCAGTGTGTATTGGTCAGAAACAATTCCAAGACAAGTATTTTGACACCCCAGACTTCCTTCTCACCTTGAGAGATGTGTGGTTGCGTTGTCGCCAGGGATGTTGGGAACTCAAATGCACTACAGTTACAAAGGCAGAAGACAGAGTGGGGGAGCCTCAGAAGGCAGAACTGTGTTCACGCTATCAGGAGATAACCAATCTGTCTCAAATTCAGTTGAAAGTGAGAGAGTTCATGAAAGAAGGTAATGGGGAGCAAAAAACTGCCAACCAGACGCACCCAGTGGTCCATCAAGACACACCCAAAACTGAAGGTGCAGAGAATTGCCCCACAGGGAATGAGTCCTGGCTGATGGAACTGAATCTGGTTTGCTTTGCAGAGTTCACAACACAGAGGTGTTCATTCACTTTTGGGGGGGAAGGAGATGAAAGTGGAGTTCGTGTAGACCTTGACCAGGCCGACTTTGGCTATTGTGTAGGGGAGATAGAGGTTCTCGTGCCAAAGGGAGAAGACATTCAGTCTGCACTGAGGAAGATTGAAAAGACTGCCCAAAGACTGGGTTTGTCTGGCGATCAGAGGGTTCAAGGAAAAATGGATGTGTACCTGCAAAGATACTGCCCAGAACACTATGCAAAATTACTAAGTGCATCTATATTGTAAGAAATGGTAACTGGAAGGTAGCTGACTAATGTCATTGAAAATTCTGCATGTCCTTAACTTTATCTAATTCAAGTGGTTAACACAAAAATGATGGTCTATCTTTGTTATTACAATAAACAATGAAAATATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449290 lncRNA downstream 22429 20881451 ~ 20881800 (-) True G1268570
TU1449288 lncRNA downstream 29648 20874361 ~ 20874581 (-) True G1268568
TU1449217 lncRNA downstream 128996 20774320 ~ 20775233 (-) True G1268516
TU1449160 lncRNA downstream 241948 20662074 ~ 20662281 (-) True G1268462
TU1449159 lncRNA downstream 242437 20661561 ~ 20661792 (-) True G1268461
TU1449352 lncRNA upstream 55613 20962089 ~ 20962325 (-) True G1268604
TU1449358 lncRNA upstream 64860 20971336 ~ 20971643 (-) True G1268610
TU1449369 lncRNA upstream 75304 20981780 ~ 20986678 (-) True G1268618
TU1449544 lncRNA upstream 321428 21227904 ~ 21228745 (-) True G1268763
TU1449545 lncRNA upstream 328001 21234477 ~ 21234903 (-) True G1268764
XM_021562673.2 mRNA downstream 2273 20884973 ~ 20901956 (-) False dcaf11
XM_021562674.2 mRNA downstream 2273 20884973 ~ 20901956 (-) False dcaf11
XM_021562676.2 mRNA downstream 2273 20884973 ~ 20901956 (-) True dcaf11
XM_021562675.2 mRNA downstream 2274 20884973 ~ 20901955 (-) False dcaf11
XM_021564362.2 mRNA downstream 23843 20879486 ~ 20880386 (-) True LOC110490944
XM_021562686.2 mRNA upstream 42424 20948900 ~ 20954807 (-) True ngdn
XR_002468620.2 mRNA upstream 95642 21002118 ~ 21007272 (-) True LOC110489780
XR_002468621.2 mRNA upstream 112333 21018809 ~ 21037502 (-) True LOC110489781
XM_036944057.1 mRNA upstream 268117 21174593 ~ 21207364 (-) False LOC110489787
XM_036944048.1 mRNA upstream 268117 21174593 ~ 21296726 (-) False LOC110489787
TU1448043 other downstream 613556 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 635741 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 1450459 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 1794872 19108559 ~ 19109357 (-) True G1266471
TU1445799 other downstream 2324066 18576718 ~ 18580163 (-) True G1265456
TU1449275 other upstream 51896 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 896211 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 2806879 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 2806879 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 2806879 23713355 ~ 23728939 (-) False G1271421

Expression Profile