RNA id: XM_036944042.1


Basic Information

Item Value
RNA id XM_036944042.1
length 7616
RNA type mRNA
GC content 0.47
exon number 6
gene id zfhx2
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20906870 ~ 20920263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTTCTATGCATGTTGTGATTGTTTAACATTTCAATATGTAGGCTATTCGCCCTGCTTGTTTATTTTAATCTGATGACTCCATAGAGGATCAGGATTTTGGGTATGCAATCTGATTCAATCCGGTTGATTGAATTCTACAAATGCTTTTTCAGATCAAGGGACATGGCTCTGGAGAGTCCCTCTCATCATGCTTCATTACATTAAACTGCAGCACTGGTTCGACGAGACAAATATTAGGCTATCTGAATAAACTAATATTGTTACATAAAGGTTTTATAGTGACGCCAAATGTATTCTTCCCTACTGAATGTCAGATATCAGCCTTGGGGGGAGCTGTCGTGTGTTTACTagagggaagaggggaaagagagagggcgaatgagggagggagagaacaggcgAGGGAGGGCGAGCAAGAGAAAACTTTTCAGTTTTAAAGAGCGAGAGGAAGCGTGCGCTGGAGCGACGACCATGCAGGAGGAGTCTGGTGAGACAGTGTGCGGTGACCGCAACGGAGTGGCGGTGTGGTTGTGCCCCCTGTGTCAACAAGGGTTACCAGACAGGGGCTCCCTTGCTCTGCACCTGAATGATGGGCATAGTGTGCTTCCTAACTGTGTAGACAAGTTGCTGGACATTGCTGCTCCCAAACAGGGGGCGAGTGGAGTGGACACCGATGTTAAGCATGATACAGATGCTGCATCATTACAACTGAAGCTTTTAGAAGATAAAGAGATGGATAAGGAAGTCGGAGTGAAAGACACGGAGGGAGGTGGAGTTGTCTTGGAGTCGGATCAGGAGAGCGATCAGTCCACAGAAACACCTGTCGACAATGAAAAGTCCACAGGAAAAAATGGTGTAATGGCTGATGGCGATGACAGCCGTCCATTCAAATGTAATGCGTGCTTAGAGGCTTTTCCTACCAGGACCACATTGTGTGTTCACTACAACTCTGCATCCCATGTGCAACGGATGAGAACAGGATCCCTAAAACAGGGTGGTGAAAATGACACCCCTGCTCCCTCAGTCTCTTTTCTGTCTCGGCCATATTTATCAAACAAGCCCTACCAGTGCGCTGTGTGTCGAGTCTCTTACAACCATGCCATTACCCTGGAGAGTCATTTGAAATCTGTTTTGCACCAGACCCGCAGCAGAAATGCAGGAATCTCTGCCAACAGTGCAACTGGAAATTCGGGaagtaacaacatggctactaacTTACTTGTTACCTCTGGGGGCAGCACTGCACAGTTGGTTTGCACCACCAGCAGCAATTGTGTCATCCCGGCAAGCCTGACAGCAGCAGCAATGACTACCAAAGACGGAGAACCTATTCAAACTCACCCGGCTCCCTCGCTGCTTTCCTCCCCTGTAGCCTCTGCTCAGGCAGTCTCTGCCTTTCTCACCCTCCTCACATCCAGCCCaagctctctctcgcactccctcctcccctctctgtttgcGGCTGGGGCGTCCCCTGCCACAGCCACACCTCAGCTCATACCCCAGCATCAGATGCTCATGCCCTTTATTGTGAATGGGCTCCAAACGCAAAGCCAGAGTCTAAACCCAGAGCTTTTGACACAGTCTGTTCCCCTTCTAGGTCTCAATGCTGCCCAGCAAGCTATCCTGGCCCAAAGACTCAGTAGCTTACAGAACCAGTGGCCAGCTGTCGACCTCCAAGCAACTACACAAACCTGTTCAGAAGACAACCAAACAAACAAGAGCAAATTGAAGGAAGAGACGAACGAGACAACAATTGAGGAGAAAAGGTCACTTAAGGCTGAAAAAGGGAAAAATTGGCCCCTGGAATGTGATGGAGAAAGTGAGATTTGTGAGGAGGATAGTAAAGGATATGCACAAGAGCTCATCAGCGCCTTAGTAAGCAAAAATAACAGGGTTGAGTCATGTAGGATAGATGAAGATAATGAAATGAAAGATGGCACAACATATGAAGGGAACTCTGCAGATGGAAAAGGGGAGGACATTGACAAGTGTATTGACCGCTCACCGTCTGTTACCAGCAACTCAAGCCTAAGTCCTACCACTTTAAATCTTATGCTTAGCCCTGATTGTACCCTTCAAAAATCTCAAGTTGGCACAAGCCCTTGTGCCTCTGTCTTGTCACCAAAATTGAGCCCCTTTAAACGCGCCTTAAATTCCTCTGATCCAACTCATCCCCATGCTAATTTGAGGGCTCGGCACTTCTCCCCAGGGCCCCCGATACTGTCAGAGTTCCAGATACAGGTTCTGCGTGCGTTTCTGGAGTCGCGTAGTGGGGCTGACGCAGCCAGTCCTCCCCGTGATGACTGTGAGTCGTTGGGCAGGGAGGTGGGGCTCAACGAGGCGGAAGTACATAAGTGGCTCACTGACGCCCGACGCGCCAAAGAAAAGCAGAAAGCTGGGGGCGCAGGGCACATGCGCAGCATTGCAGCCTATGGTAAAAGATACAAGCGTCTTGATAACAAAGAGGAGGAAGGTGCTCTTACAATAGATATGCTTGAGGGAagggacagcggtgaggcctctGGCAGTCACGCAATGGATCTGTCCAATAGTGGAGGAAGGAGGAAAGAGTTGGGGAGGGAGAGCCAAGGGGACTCGTGTCTGGCCTCTGATTCAGACAATGAAGAATTCTACACCTCTGTCATCGTGAGTGAGGAGGACAGCCTGAGTGGTTCTATGAGGGAGGGGCCAGGCAGCCCTGCTAAAGAGGAGGCTCTGGTAGAACTGGCAGGAGACAAGGGCTCAGGAGGAGGAAAGGTGCTGCGCTCCACCACTGTGTTTCTCTCAGACGCCGAGGATGACGATGATGACGAGGAGGCTGCATCTCAGAGAgcaaagagaagaaagagaaagagggagttgGAGGTGGAGGTCAAGAAGGAGAGATTAGACCCCGATGTGGATTTGGAGCTAGAGGCCCAAGCTGATCCTCCTTCCCAACTTTCTATCGCCATTGACCATCGAGGGCTTCCAAGTGGCATTCtacactccctccctctatctctgtccctgGCTCCATTCTCTACTCAGTTCCTTAGCccctatgttctctctctccctccctcagtggtTGGGCTTGGAGTTGCAGAAGGAGATGGAGGCAAAGTACCTGCCTTTCCAAACCCTCCTAACATCACCCGGTTCTCTGACCCTCTCATTACATCGCCACTCTCCCTCCTAACCCACACCTCCCACTACATGTCTAATGGTGGAGACTGTGAGGCTGCTTTAGATCTCAGCATCAGGAAAAGCCACAGCTCAACATCtgcttcctccacctctctcatgGGTGACAAGACTTCAGCACAAAAGGGCCGTCTGCTTGACGGGCTAGGTCTAAGGCCCACAGCTTTTGGGTTACCTGAGGAAGGGAGACTTGGTGTGGTCAAGTTCAAACCTGAGCAAGCAACGTCCAACAGCAGTGGCTTTGCCCGTGGCAATAACATGGCTAAGGCCAGCACTGTTTACATGAGGGCAGCAGAGAGGTTGAACACCTCCATAATTGAGAGAGAAAAGGAGcgggagagggaaaaagagaaggagagggaccaGAAAGGCAGGCCCAAAGCACGACGGTACAGGGACATGAGACGTTCCAGGACCATCATCCAGGCTGAGCAGCTCGATGTGCTTTATGGCTGCTATTTCAAAGATCCAAATCCTGGGAAACATGAGTTTGAGCAGATATCAGAGTGGGTCCATCTCCCAAAGAAAGTTGTACAGATCTGGTTCCAGAACATGCGGGCTAGGGAGCGCAAGGGTGAGGTTCGCTTCGTCAGTGATGGCACTCTGGCAGCAGTGGGCAAACCGCTCATCAAGTTCACCTGGCCACTGTCACAACCCATCTTCTCCAGCACCCCCAAATCAAACACCAACTGTAGCGTCTCAACTGTAGCCAATCCAGTACTGGCCCTCCCAAAGACTGAGGTGAAAGAGGAAATTGTCAAAATCAAAAACCATGTTCCTAACAGGCCCAAGGAGGTGGCCTCTTCCATTTCCTCCGTGAGCAGCAGTGTGTCTGCAGTGCCAAAGACCAAAATGGAGGTGACAAACAATGTCACAATGGTCAAAATCGCCCCCAAAAGCATCGCTCCATCTCCCCCTGTCGTACCCAAGGAGACCCGTCCTACCCCGCCTTGCCCCCTTCCCAAACATACACCTGAAGAGGATGTTGGGGAAAATGACTCTGATGAAGAAGTGGATGATCATAACCAAGAGAGGCCACTAGCTGGGCCTGGATCCACTAACCGCATGGTACCAAAAATGCCCTCTACTCCAATTAGCAAGTCCCTTGCTGCGACATCTCAAAAACAAAATGGGCTCAACTACTGGTCGGCCAAGGGCCCCTTTAAGATCAACACACTTTCTAGGGAACAGTTGGGTCTGTCAACCCCCCGTGCTCCCACAGTTGTCGGGGCCACTGCTGCCACCACTGCGCTCAATATTTCTGCTGCTGCCTCTACCGTAGCAATCACCACCACAACAGCAAGCGCAAGCCCTCAGACCACTGTCAGCATTGTCACCATCGCCAAGACCGCTCCATCGGAGGGAAGCTTCCTGCACCACTCCACCACCCGCAGGCCGCGCACACACCTGTCCTGTCTGCAGCTGTCCATCCTGCAGTCTTGCTATGAGACGTGCGCCCACCCTAACGCGCTGGAGTGTGAGGCAGTAGGGACGGAGCTGGGGCTGCCACTCAAGGTGGTGCAGATCTGGTTCCAGAATACCCGCGCCAAGGAGAAACGCTGGAGGCTGCAGCAGGAGAAACTGtCTCCAGTGTCGTCAGATCCCTCCAAGAAGGTTGACATGAGCTCAGGCAGCTATCTGCAGTACAATGCTCTGCGAGCCCACCGTCCTATCCTTCCCAAACCGGTTCAGCTGACGGTCCTCGAGCCATCTTCTCCCCCAGCCAGGGGCCAGCCAGCAGGTCGAGAGATGCTGAGAGGCAGGTGCGAGGCCTGCAATGCAGGCTTTGAGTCCAGAGCAGCAGCAAGATCCCATGTCTTCTCCCCTCGACATCTAGCCACTCTGAGAACCACTAACTTTGGCCAGCCGGCGACCATCAACAACGGATCTGATACCGGGTCCAGTTCTGTCTCCGCCTTAGGGTCTGTTGTAGAGGACCCTCCAGCTTCCCCACCCCCAGCCAGCAGCACCAGCTAAGGCACCCGTCGGTGCTGGTAGAGACTCGGGACCCATTGGGCTCCTTACATTTTAAGAAACAAAAATTGGGCACTGGTCTTCCAAGCTAATATCCTTTGGTTTTCGATGTTTGGAAAGGCCCGGTtgccctttctccctctccttggACGTCTTTCTGCCGAGTTCTTGTTTCCAAACTGGACTCATTTGGATACACCGACTATTGTTACACTGCTTCACGCTTAATCAAAAGTTATCAAATGACTGATGAACATGTACCAGTCCCCTTTGATATTTTCCTGGTCTGCAGTTATAATCCTTGTCGTCTCATCCTTGTCCTTTAAAATTACTCTTACAATACTTGTGTATTATCCCCTAAAGACTGCTTATGCAAAACGATTAGGCCATTATATGACTGACTGCAAGATTCTTATCCTCATAAGTGCTCCTAGAAATTGAAGTTTTAATAGTGGACCAGGCACTTGTGTTTGAGACTGGGTCTGATATTACATTTCCCACAGTATACTCCTTCCCAAGTCATTTTGTTAGTCCAACTGCATCCTATAAGACTGGGACTACTGGGATTGACTGTACATGGATAGATTTGACCAGAACAAATGAAAAGTAGCTCTGTTTTAGTGGCTTTGAACGGAAGCAGTCTTGATTGTATCTGTATCCCCAACTTTCGGATACAGGTGGAGTGTGTTCAGTTAGAGATGGTGTTTTTCACTTCACTTGGATTTTAAAGGTACTTTTAACTGATTGTGACTAGAATTGGCACGTTAAACTGAACAGATTATTATCCCCTCCTGTTAGCACATTGCCTGCGGCTGaaatgtatagtgcactacttttgactagagccctatgggactaGAGACCAACTCACTCTGTTTTCATGACAATCCTCTATAGATGGGGGGGAGAAGAGGCTGAAGAGGGCAGACTCATTATACAGCACTTTGATGCGTTTCACATTGTATGAAACGTTTTTATTCTTAAGCATTCTTATGCAGAGCGTATTTCTACTTAATGAAATATGTGCATGTTGGATGTCTTATGGTGAGTCACAATAATTAAATTGAAACATTGTTTTGTTGCAGTCTGTCAAACAAGGTATGTTTTGGCTTATTAAACTCCAAACAAAAGACGGATCAGACCGTAACGCCGTGCAAGGAGAGTCTTAGTCCAGTAACTTGTTAAATTATTTCCAATCTATTAATGCATCACTGGTGTGCAAGATCTATTGAATGAGTATGTGGAGCAAGAAAATTGTATGTTTCCTCCCATTTTTATTATTTGGTCAATGAAAATATCCACAACGGATCATTGCATAAGATTGGAACAAGTGCTATTGCTTATAACCATCAATATACATCAACTTCCTGTGGAGGTCAAATGAAAAAGACTTGACCAAGAAAAGAACAGGGTTTGAATTTTTGGGgtttaatttatatatatttttgtcttgAAACATATGTGGTTGTAAGCTAATACTTGTCATCTTTGTACTGGGTAGAAATAATGCAACTCGTCCAGAAACAAAGAGAAGGGAGTCAGTTTGGTACTCTAGTCACCTTTTTGTAAGCAATAGGGACATGCAAAAAGTCAAGACGGAGCTAACAAAGAAGGTGCTGTTTTGAAGGACACAAACTACTAAATATGTTTTCCTTCGGTTTTATGTtgtatattattgttattaacaATGTTACTATTAATAGTTTTAACAAAATGCTAAACTAAATGATTTTTTAAAAAGAAATATATTACACAAAACTGATATTCCAAAGTTACCCTTCCTTTTGCTTTCTGTCATTTAAAAAAACCAAAAAGCAATCTTGAGGTTGgcagagagcaggagagatgtTCTTCATGCAAACTGTAAAGTAACTCCCATGGCTTGACACTTGAGCCAGTCCAACATTTTTACCATGAGCTACAGATTAATGCATTTCAGCCTTCACAACATGAGGGAGGCACTATATTGGGCTCAAAGACTAAACGTTTTAAAATGTCCTCCATAATTACTAATCATTTTTTAATGGTGTGGAGCTGTAGCATTTGTCTAAAACAAGGACTGGGTTGCAGGGCTTCAAGTATGGGATTACACAATGTTGCATTGTCCAAGGTAGATAGGTTTTATGGAGACCTGCTTTTTATTCTAATCATTTTTCATTGTCACTTGATTATCACAATTGTTATAACTGTACTACTTCTGCTATTGTTATCATTACTCATCACGGTTTTGATTATTATTGAACCATAACGGTTTTAATGATGCCTCTTTTCACAAGAAAGATGGTATTGGTATGAATATTGAACAATAATGGTGGCAGTGTGTTTTAAAAGATGTTTAGAATATTGACGAAGCTTATATTTTTCCTCACTTGTACTTTCATTTTGTGTTGGATCTCCCATTCAGTTTTCTTTTGGTATAcagaaaacaaataaaataaattgaacAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1448590 lncRNA upstream 2351 20904265 ~ 20904519 (+) True G1267965
TU1448587 lncRNA upstream 4163 20902493 ~ 20902707 (+) True G1267962
TU1448526 lncRNA upstream 102108 20801241 ~ 20804762 (+) True LOC110490942
TU1448480 lncRNA upstream 128372 20777986 ~ 20778498 (+) True G1267867
TU1448495 lncRNA upstream 166030 20738895 ~ 20740840 (+) True G1267877
TU1448615 lncRNA downstream 49019 20969282 ~ 20969816 (+) False G1267986
TU1448616 lncRNA downstream 49019 20969282 ~ 20969935 (+) True G1267986
TU1448608 lncRNA downstream 51652 20971915 ~ 20973334 (+) True slc22a17
TU1448734 lncRNA downstream 251699 21171962 ~ 21172222 (+) True G1268075
TU1448744 lncRNA downstream 334998 21255261 ~ 21257850 (+) True G1268081
XM_021562671.2 mRNA upstream 27637 20874867 ~ 20879233 (+) True LOC110489770
XM_021564361.2 mRNA upstream 91360 20812409 ~ 20815510 (+) True LOC110490943
LOC110490942 mRNA upstream 101888 20802579 ~ 20804982 (+) False LOC110490942
XM_021562668.2 mRNA upstream 111834 20792087 ~ 20795036 (+) False nanog
XM_021562669.2 mRNA upstream 111834 20792087 ~ 20795036 (+) True nanog
XM_036944043.1 mRNA downstream 7057 20927320 ~ 20943349 (+) False pabpn1
XM_036944044.1 mRNA downstream 7057 20927320 ~ 20943349 (+) False pabpn1
XM_036944045.1 mRNA downstream 7057 20927320 ~ 20943349 (+) False pabpn1
XM_036944046.1 mRNA downstream 7069 20927332 ~ 20943689 (+) False pabpn1
XM_036944047.1 mRNA downstream 7976 20928239 ~ 20943349 (+) True pabpn1
TU1448574 other upstream 65472 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 1226765 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 2044359 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 5012706 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 5170453 15735930 ~ 15736417 (+) True G1261980
TU1449889 other downstream 865958 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 2212596 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 2457045 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 2486397 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 2525575 23445838 ~ 23450473 (+) True G1270669

Expression Profile