RNA id: XR_002468620.2


Basic Information

Item Value
RNA id XR_002468620.2
length 461
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110489780
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21002118 ~ 21007272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCTGCCCTTCAATGACTCGCTAAGGATCCCATTCCCAGCTGCCGTGTGTCGTGCTTGATGTACTTCAACACATGGATTCACCTTAACCTATTCTTCTGTTGTCATTTGTCTCCATATATTGACAGACTGCCAGGCCATCTCTACTGCTCCCCCAGGCTAAGACCATCTCTTCCCTCACCAAGGCACGTGGGTTCCCTGACAGTAGGTGAAAGAAAGATATAGGTTAGTGATGCAGGAGTAGCCTCCACAAATCTTCCTCTAGCAACAGAATCACCACTGACCAAGATTTACAGACTGccacaccatctccactgctCCCTCAGGCTACGACCATCTCTTCTCTCACAGGGAGTGAGTGAAAGAAGAGAGGATGTGCAGTTGGCCAGCAAAGTGATGCAGAGgtgctccctcctgtccagcgcttccagagtctccctcctgtccagcactTTCAGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449369 lncRNA downstream 15440 20981780 ~ 20986678 (-) True G1268618
TU1449358 lncRNA downstream 30475 20971336 ~ 20971643 (-) True G1268610
TU1449352 lncRNA downstream 39793 20962089 ~ 20962325 (-) True G1268604
TU1449290 lncRNA downstream 120318 20881451 ~ 20881800 (-) True G1268570
TU1449288 lncRNA downstream 127537 20874361 ~ 20874581 (-) True G1268568
TU1449544 lncRNA upstream 220632 21227904 ~ 21228745 (-) True G1268763
TU1449545 lncRNA upstream 227205 21234477 ~ 21234903 (-) True G1268764
TU1449555 lncRNA upstream 238601 21245873 ~ 21246537 (-) False G1268771
TU1449557 lncRNA upstream 238887 21246159 ~ 21246537 (-) True G1268771
TU1449558 lncRNA upstream 240745 21248017 ~ 21249031 (-) True G1268772
XM_021562686.2 mRNA downstream 47311 20948900 ~ 20954807 (-) True ngdn
XM_021562677.2 mRNA downstream 95642 20904229 ~ 20906476 (-) False thtpa
XM_021562679.2 mRNA downstream 95642 20904229 ~ 20906476 (-) True thtpa
XM_021562678.2 mRNA downstream 95658 20904229 ~ 20906460 (-) False thtpa
XM_021562680.2 mRNA downstream 95658 20904229 ~ 20906460 (-) False thtpa
XR_002468621.2 mRNA upstream 11537 21018809 ~ 21037502 (-) True LOC110489781
XM_036944057.1 mRNA upstream 167321 21174593 ~ 21207364 (-) False LOC110489787
XM_036944048.1 mRNA upstream 167321 21174593 ~ 21296726 (-) False LOC110489787
XM_036944049.1 mRNA upstream 167321 21174593 ~ 21296726 (-) False LOC110489787
XM_036944050.1 mRNA upstream 167321 21174593 ~ 21296726 (-) False LOC110489787
TU1449275 other downstream 42029 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 711445 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 733630 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 1548348 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 1892761 19108559 ~ 19109357 (-) True G1266471
TU1450121 other upstream 795415 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 2706083 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 2706083 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 2706083 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 2706083 23713355 ~ 23728939 (-) True G1271421

Expression Profile