RNA id: XM_021562692.2


Basic Information

Item Value
RNA id XM_021562692.2
length 6030
RNA type mRNA
GC content 0.49
exon number 40
gene id LOC110489784
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21145517 ~ 21161815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccagggggagacagaccagggggaGACACGAGACACCGGACATCCTAAAGTCGAGATCCTTTCCACCAAACGTATCCCAGGGGTGACCAACAGGTTTAAAATGGGGGACAGTTTGATGGCAGAGTTTGGCGTCGCAGCTTCCTTTCTGCGTAAATCTGACAAGGAGCGTATGGAATGCCAGACTAGACCCTTTGACATAAAGAGAGAGTGCTATGTGCCTGACCCTGAGGTAGAATACGTCAAGGCCACAATCACCAGCAGAGATGGGGCTAAAGTCACCGCTGATACGGAGTTTGGAAAGactgttactgtgaaGGAGGATGATGTCCACCCCCAGAACCCGCCAAAGTTTGATAAAATTGAGGACATGGCGATGTTCACCTTCCTGCACGAGCCCGCTGTGCTGTTTAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTATACCTACTCAGGGCTATTCTGTGTCACTGTCAACCCATACAAATGGCTGCCAGTGTATGATCAGTCGGTTGTCAACGCATATAGAGGCAAGAAGAGGAGTGAAGCTCCACCTCACATTTTCTCCATATCTGACAATGCTTACCAGTACATGTTGTCAGACAGGGAAAATCAGTCTGTCCTTATCACTGGCGAATCCGGTGCTGGAAAGACTGTTAACACCAAGAGAGTCATCCAGTACTTCGCCAGCATTGCTGCTGTTAGCGGAAAGAAAAGTGTATCAGAAGAAAAAAAGGGGACCCTGGAGGATCAAATCATCCAGGCCAATCCTGCCCTGGAGGCTTTTGGTAATGCCAAGACCATCAGGAATGACAACTCCTCCCGATTCGGTAAATTCATCCGaattcattttggagtcactgGGAAGCTTTCGTCTGCTGACATTGAGACTTATCTTCTGGAGAAGTCACGTGTCACTTTCCAGCTCAAGGCTGAGAGAGACTATCACATTTTCTATCAGATCCTGTCCCAACAGAAACCAGAACTTCTGGAAATGCTACTCATCACCAGCAATCCCTATGACTATGCCTTCATCTCCCAAGGAGAGATTGCTGTAATTTCCATTAATGATTCAGATGAGCTAATGGCTACTGATGATGCCTTTGATGTGCTGGGCTTCTCCCAAGAGGAGAAGAATGGCATTTATAAGCTGACTGGTGCCATCATGCACTACGGCAACATGAAGTTCAAGAATAAGCAGCGGGAGGAGCAAGCAGAGGCAGATGGCACTGAGGATCTTGACAAAGCTGCATATCTGATGTGCCTGAACTCTGCTGACCTAGTCAAGGGGCTGTGTCATCCAAGGGTCAAAGTAGGAAATGAGTGGGTCACCAAAGGTCAGAATGTCAACCAGGTGTACTATGCTGTTGGTGCACTGGCAAAGAAAATTTACGAGAACATGTTCCTCTGGATGGTGATAAGAATCAACCTTTCTCTGGACACTAAGAACGCTCGTCAGCACTACATTGGTGTGCTGGACATTGCTGGCTTTGAGATCTTTGATTTCAACACCTTTGAGCAGCTGTGCATCAACTTCACTAATGAGAAGCTGCAGCAGTtcttcaaccaccacatgtttgTGCTGGAGCAGGAAGAGTATAAGAAAGAGGGCATCGTCTGGGAGTTCATTGACTTTGGCATGGACTTGGCTGCCTGCATTGACCTCATTGAAAGGCCCATGGGTATCATGTCCATCCTTGAAGAGGAGTGCATGTTCCCTAAAGCCAGTGATAATACATTCAAAGCTAAGCTGTATGATACGCATCTGGGCAAAAATGCCTGCTTCCAGAAGCCTAGGATTGTTAAGGGTAAACCAGAGGCCCATTTCTCCATGGTTCACTATGCTGGCATTGTTGACTACAACATTGGTAACTGGCTGGTGAAGAACAAGGACCCCCTGAATGAGACTGTGGTCGGACTGTTCCAGAAGTCAAGTCTTAAGTTCCTGGCAAACCTGTTTGCCAACTATGCTGGTGCAGAAGGAGCACCTGAAGAAAAAGCGGCTGGAGGAAAAAAGAAGAAAGGCTCTTCCTTCCAGACTGTGTCTGCATTGCACAGGGAGAACTTGGGTAAACTCATGACCAACTTGAGGTCTACTCACCCCCACTTTGTGCGTTGCATCATCCCCAATGAGACCAAGACTCCTGGGGCCATGGAGAATCCTCTGGTCATGCACCAGCTGCGCTGTAACGGTGTGCTGGAAGGCATCAGGATCTGCAGAAAGGGCTTCCCCAACAGAATCCTGTATGCTGACTTCAAACAAAGATACCGCATCCTCAATCCAAATGCTATCCCTGAGGGTCAGTTCATGGACAACATGAAGGCATCAGAAAAACTGTTGGGCTCTTTGGATATTGACCACACCCAGTACAGATTAGGACACACGAAGGTGTTCTTCAAGGCTGGTCTCCTGGGTACTCTTGAGGAGATGAGAGACGATCGTCTCGCTCTTATCATCACTGGCCTCCAGGCCAGATCACGTGGTCTACTTGCTAGAATTGAGTTCCAGAAAATGGTTGACCGCAGGGATGCCTTGCTTGTGATCCAATGGAACATTCGTGCCTTCATGGGTGTCAAGAATTGGCCCTGGATGAAGATGTACTTCAAGATCAAACCTCTACTGAAGTCAgcagagactgagaaggagatgGCCAACATGAAGGAAGAATTCCTGAAGCTTAAAGAGGCTTATGCTAAATCTGAAGCTCGTAGAAAGGAGCTGGAAGAGAAAATGGTTTCCATTCTCCAAGAGAAGAATGACCTGCAGCTCGCTGTCCAAACTCAAGAAGACACTATTGTTGATGCTGAAGAGAGATGTGAGGGTCTGATCAAAAGCAAAATCCAGCTTGAGGCCAAAGCAAAAGAGCTGACAGAAAgactggaggatgaggaggagatgaaTTCAGAGCTAACTGCTAAGAAGAGGAAGCTGGAGGATGAGTGCTCAGAACTCAAGAAGGACATTGATGATCTGGAGCTCACTCTGGCTAAAGTGGAGAAGGAAAAGCATGCCACAGAGAACAAGGTTAAAAACCTTACTGAAGAGATGGCAGCTCTGGACGAAATCATTGCCAAGCTGACCAAGGAGAAGAAGGCTCTCCAAGAGGCTCATCAACAAACACTTGATGACCTGCAGAGTGAGGAGGACAAAGTCAACACGCTGACCAAGGCCAAAGCCAAACTGGAACAGCAAGTTGATGATCTCGAAGGGTCTCTGGAGCAAGAGAAGAAGGTGAGAATGGACCTTGAGAGAGCCAAGAGAAAGCTGGAAGGAGATTTAAAGTTGACCCAGGAGAGCCTAATGGACCTGGAGAATGACAAGCAGCAGATGGAGGAGAGAATGAAGAAGAAGGACTTTGAGATGAGCCAACTCAACAGCAAGATTGAGGATGAGCAGGCCTTGGGTGCCCAGCTCCAGAAAAAACTGAAGGAGCTGCAGGCCCGCATTGAAGAATTAGAGGAAGAGCTGGAGGCTGAAAGAGCTGCCCGTGCCAAGGTGGAGAAACAGAGGGCAGACTTGGCCAGAGAGCTAGAAGAGATCAGTGAGAGGCTGGAGGAGGCTGGTGGAGCCACTGCTGCCCAGATTGAGATGAACAAAAAGAGGGAGGCTGAGTTCCAGAAGGTGCGCAGAGACCTTGAAGAGGCTACCCTGCAGCATGAGGCTACAGCTGCCACTCTGAGGAAGAAAAATGCTGACAGTGTAGCTGACCTGGGAGAACAGATTGACAACCTTCAGAGAGTGAAGCAGAAGCTGGAGAAAGAGAAGAGTGAGCTCAGGCTGGAGCTGGATGATGTGGTCTCCAACATGGAGCAGATTGTCAAGTCCAAAACAAACTTGGAGAAAATGTGCCGCACTCTAGAGGACCAGATGAGTGAATACAGGACGAAAGCTGAGGAAGGACAGCGATCCATCAATGATTTTACCATGCAGAAAGCAAAGCTTCAAACTGAGAATgGTGAATTTGCCAGACAGTTGGAGGAGAAGGACTCTCTGGTCTCTCAACTGACCAGAGGTAAACAGTCCAATGTTCAGCAGATTGAAGACCTCAAGAGACAACTGGAGGAGGAAGTCAAGGCAAAGAACGCACTTGCCCATGCAGTGCAGTCTGCTCGCCATGACTCAGATCTGCTGAGGGAGCAGTATGAGGAGGAACAGGAGGCCAAGTCTGAGCTGCAGCGTGGCATGTCCAAGGCTAATGCTGAGGTGGCTCAGTGGAGAACCAAGTATGAAACTGATGCCATCCAGAAGACTGAGGAGCTTGAGGACGCAAAGAAGAAGCTGGCTCAGCGTCTGCAGGATGCAGAGGAAGCTGTGGAAGCTGTAAATGCTAAATGTTCATCCCTAGAGAAGACTAAACACAGACTCCAGAATGAGATTGAAGATCTCATGGTGGATGTGGAGAGATCCAATGCAGCTGCTGCCTCTCTGGACAAGAAGCAAAGGAACTTTGACAAGGTCTTGGCTGAGTGGAAGCAGAAGTTTGAGGAGTCTCAGACTGAGCTGGAGAGCTCCCAGAAAGAGGCCAGATCTCTCAGCACTGAGCTCTTCAAACTCAAGAACTCTTATGAGGAGTCTCTGGATCATCTGGAGACAATGAAGAGGGAGAACAAGAACCTCCAAGAGGAAATTTCTGACCTGACGGAGCAGCTTGGTGAAGGAGGAAAGAGCATCCATGAACTGGAGAAGATCCGTAAACAGCTGGAGCAGGAGAAGGCTGAGATACAGTCTGCTCTAGAGGAAGCTGAGGCCTCCCTAGAGCATGAGGAGGGCAAGATCCTGAGAGCTCAGCTGGAGTTCAATCAGGTGAAAGCTGACATTGAAAGGAAGCTGGTAGAGAAGGATGAGGAAATGGAGATGAATAAGAGGAACCAGCAGAGAGTTGTGGATACCCTGCAAAGCTCCCTGGAGGCAGAGACTCGCAGCAGGAATGAAGCTCTCAGgctgaagaagaagatggagggagatctCAATGAGATGGAGATCCAGCTCAGCCAGGCCAACAGGCAGGCATCAGAGGCCCAGAAGCAACTTAAGGGTCTCCATTCCCATCTGAAGGATTCTCAACTGCAGCTGGATGATGCTCTTCGTAGCAATGATGACCTGAAGGAGAACATTGCCATTGTGGAGAGACGGAACAACCTGATGCAGGCTGAACTGGATGAGCTAAGAGCCCtggtggagcagactgagagagGCCGCAAACTGGCTGAGCAGGAACTGCTGGATGTTAGTGAGAGAGTTCAGCTGCTCCACTCACAGaACACCAGCCTACTGAGCCAGAAGAAGAAGCTAGAGGGCGACACATCCCAGCTTCAGAATGAAGTGGAGGAGGCTGTGCAGGAGTGTAGAAATGCAGAGGAAAAGGCCAAGAAGGCCATTACTGATGCTGCCATGATGGCAGAAgagctgaagaaggagcaggACACCAGTGCTCACCTGGAGCGCATGAAAAAGAACATGGAGCAGACCATCAAGGACCTGCAGCACCGCCTGGATGAAGCTGAACAAATCGCCATGAAGGGGGGCAAGAAGCAGATCCAGAAGCTGGAGGCCAGAGTGAGAGAGCTAGAGACTGAAGTGGAACTGGAGCAAAGGAGGAGCAGTGATTCTGTAAAAGGAGTCCGTAAATATGAGAGACGCATCAAAGAACTCACCTACCAGACTGAGGAAGACCGTAAGAACTTGAGCCGCCTGCAGGACCTGGTGGACAAACTGCAGCTGAAGGTCAAATCCTACAAGAGAACTTCAGAGGAGGCTGAGGAACAAGCCAATGCCAATTTGGGCAAGTTCCGTAAGATTCAGCATGAACTGGATGAGGCAGAAGAGAGGGCTGATATTGCTGAGTCTCAGGTCAACAAGATGAGAGCCAAGAGTCGTGATGCCGGTTCCAAGAAAGGAAAGGATGAGGAGTGAGGCCAAGAGTTGTGATGCTGGCTCCCAGAAAGGACATGATGAAGAGTGAAGCTCTCAGATGGACCTTTCTGAAAATCTCCTGACTGTAGTGCTTTAGTTGTTTCTCTATTCTCC

Function

GO:

id name namespace
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K17751 MYH6_7; myosin heavy chain 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1448608 lncRNA upstream 172183 20971915 ~ 20973334 (+) True slc22a17
TU1448616 lncRNA upstream 175582 20969282 ~ 20969935 (+) True G1267986
TU1448615 lncRNA upstream 175701 20969282 ~ 20969816 (+) False G1267986
TU1448590 lncRNA upstream 240998 20904265 ~ 20904519 (+) True G1267965
TU1448587 lncRNA upstream 242810 20902493 ~ 20902707 (+) True G1267962
TU1448734 lncRNA downstream 10147 21171962 ~ 21172222 (+) True G1268075
TU1448744 lncRNA downstream 93446 21255261 ~ 21257850 (+) True G1268081
TU1448819 lncRNA downstream 125816 21287631 ~ 21289238 (+) True G1268151
TU1448855 lncRNA downstream 169261 21331076 ~ 21331425 (+) True G1268178
TU1448892 lncRNA downstream 213071 21374886 ~ 21376176 (+) True G1268212
XM_021562693.2 mRNA upstream 15212 21107774 ~ 21130305 (+) True LOC110489785
LOC110490945 mRNA upstream 53082 21084390 ~ 21092435 (+) True LOC110490945
XM_021562691.2 mRNA upstream 71417 21055658 ~ 21074100 (+) True LOC110489782
XM_021562690.2 mRNA upstream 98953 21030657 ~ 21046564 (+) True LOC100136149
XM_021562689.2 mRNA upstream 162067 20971804 ~ 20983450 (+) False slc22a17
XM_021562718.2 mRNA downstream 486322 21648137 ~ 21649966 (+) True LOC110489799
XM_021562713.2 mRNA downstream 545921 21707736 ~ 21713134 (+) False aoc1
XM_021562709.2 mRNA downstream 545922 21707737 ~ 21713134 (+) False aoc1
XM_021562711.2 mRNA downstream 546242 21708057 ~ 21713134 (+) False aoc1
XM_021562710.2 mRNA downstream 546565 21708380 ~ 21713134 (+) True aoc1
TU1448574 other upstream 304119 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 1465412 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 2283006 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 5251353 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 5409100 15735930 ~ 15736417 (+) True G1261980
TU1449889 other downstream 624406 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 1971044 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 2215493 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 2244845 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 2284023 23445838 ~ 23450473 (+) True G1270669

Expression Profile