RNA id: XM_036944053.1


Basic Information

Item Value
RNA id XM_036944053.1
length 8475
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110489787
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21174593 ~ 21296726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAGACTGTCCGCCAGCGACATTCTGACGTTttactcttcaatggctgttctTCTTATGGTTGCCTATTGGGCCAATATAGTCCCGTAAAAGGCGTCAAACTTACTCATTGTACGTTCTGGTTGTCGATCAAAGTAAATTACAGTGCCGAAGGAAACCATCAGGGCGTTCGCCTGTAAAATACAAAAGCTGTGATTGGAGGTAGCCTCTGTCAAAAGGACATTTTCGCCATTATCATTGGATAAAATTTCAGTCAGTTGGTATTTTGGGATTTTGATTGGAGGAATCTGTCTGTAGGCGGTAATGTTACCCTGCGGTCACTGAAGCGCAGTACGGGAGGGCGGATCATCATCGTGGTGGCAGCTACACTCGGAGACTCCCGACAAACTGTCAAAAATATTCAGCAAACGaACCATGGCAGAGCTGGACCTGAGCCTGAGCGATGCTCTGATGGACAGTGTGCCCCAGGCTGGCCCGGAGGACCTGGTGGAGAGGGACTTTGTGGCCCAGCTGGAGGCCGAGGCCTTTGACGACCAGGTGGGCGAGACTGTGGGCAAGACGGACTACATCCCCCTGCTGGACAATGACGGGAACAGGGCAGatgCCGACTCTGTGTTGGAGAATGGCGAGCAGGACGCCCAAGGGGCACAAAAACCTGTTACTGCAGGTTCTAAAGTGACACCTGGGGGACAGACAGCAGCGTCACGCCCAGAACCACAGGGGGAAGTGCGTACCAATTCATCAGAGCAGCAAGTCTTTGCAGCCCTCTCAGGCTCCATGGCAGGCTTCCCTGATCATTGGAGCTCCCAGACCAACAACCCGCCCCAGATGATGGACAGTGGACTGATGGGAGATTCTTCAGGTTTCTCCCAGCCTGCTATGGGGACGGAGATGGGGATAGCTCCACTATCGACAGAGAGGCCTCCCAGCATCGCAGAGCCCCAGAAGCCCCCACCTCAGGCAGCCAACACACTCAAGGACATGTCTGCAGGTGCCCTGGGCGATGGCTGGCCAGACGAGGCTTGCATTCCCACCGACCTGCCATTCACCCAAAGCGTCTCCACAGTGATCAGTCGCCATGCCAGCCACCTGGCGGCCAGCCCCGAGGACCGCCCTGACTCTGGCTGGCCCCTCCGAGAGGCCTCGgcggtgggggaggagagggaaagcaACGAAGGAAACGACCGCAAACaacagcagaagaagaagaagaaaaggaggCCCCGGGATGATGTGTACGACCTGGTAGAGAACAGGGACCACCCGGAGGCTCAGGCTGAAAACACACCCCTGTCAGAGGGCCACCACAGAGTCTCCCCCCGCAAGGACAGGGACAGGATGGATGGAGGCTGGGAGCGCGAAGAGCCAGGGAGAAGTGGAGGCAGGGGAAAGAGGGGCAAGAGCAGGAAGAAGCTTCCAGAAGAGTGGGGAGTCACAGCTGAGCCCTTCGTGCCCTCTTCTGCCTCCTCTGCCAATGACCTCCCTGAAGGGGTGTTAGACCAACTAGTGCCCCCCATCACCCATTCCCAGCCCCTGGAGAACCCCTACTCCAACAAGGGGCTGAGTCCTGCCAGTGAGGAGTTCTACGGGggcctcttccctccatctctcacccagGACCTGCTCTCTCTCACAGCTCCCACCTCCCCTCCACCGGCCTTGGGCTGTGAGCTCCTGCCTACCGCCCCTGTCTCCATGCCCACCAGTCAGGGAGACTTCTCGCCCAAGAACACCTTCCCTATGGCCTCATGTCCAGGAGACCCATTCACTGCTAGCTACCAAGACCTGCTAATGGATACAGAGAACGCTAGCATGGGCAATGCCAAAGAGGCTTTCTCCACAACCTTTCCCCTAGATTCCCCAGTTCATGAGTCGGGTGTCAAGGTGGTGTTTGATCATGACACCCCCATGCACGATGTCCATATGAAAAATGCCTTAAGTTTAAGCCTCACCCGCCAACCAGATCGTGGCCTGCCCCCATTGGAGAAGTTCAGTGAGCTCACAGCGAccgctccccctttctccccctccgaCAGCTCCTGGCTCATCAATGACTCCAACTTCAACAACGACTCCTTTGAGTTCAGTGACATCACTCCAGGGCGCCCACTACCGCTTGGCCTAGCCTTCGACAcacccagcccagcccccctcCGCTCCCCCAAAACCATACCCGAATATCACCCCAGGGAGGGCAAATCCCCATCACAGAATATACCCACGaagtccccctcctcctcttccaccaaaaGCCCCACCTCCCCGGGGTCTGGTCTGAACCCCGCTGCCAAGCCCTTCTTCCCCAGCTTTGCCGAACTCACGGAGCCCCTGGTGGTGGTGGCCCCCATGTCTGAAGtcaaaTCAGAGAAGATGGACAAACCAGAGAAAGAGGAGACGATGGACCACTTTGAGAAGTTGAACCAATTTGACATGTTGGATAAGCTCGATAAAGTGGAGAAGAAGGATTCGACTGGGAAGACTGAGGCGTCAGTGAAGGTGGCGTATGCAGGACCACTGGACAAAGGAGAGAAGATGGGTCAAATGGACAAGGCAGAGAAAACGGAAAAGCTGGAGCCGGCAGAAAAGGTAGACAAAGAAGAAAAAACAGAGAAGGTGGATAAAATGGATAAGGGCGACAACACAGACAAGGTAGAGAAAACTGACAAAGTAGAGAAGATGGACAAGGTTGAAAAGCCTGAGGAGACAGAACAGAATATTGAAAAAATGGAGAAGACCCCAGAGAAACCGGAGGCAGAGGTGAAGTTGGACACATTTGATAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGGCAAGATGGAAACACAGCCTGACAAGATGGAAACACAGCCTGACAAGATGGAAACACAGCCTGACAAGATGGAAACACAGCCTGACAAGATGGAAACACCGCCTGACAAGATGGAAACACAGCCTGACAAGGAGAAGACAGATCATGTTGGAAAGGTAACAGTAACAGGTGAGAAAGTAACAGAAAATGTTGAGAAGCCCAAAGACAACGTTGAGAAGGAGGATAAGAAGCCAGAGCTGGCTCAGAAATTAAACAAGCAGGTTAAGGTGGAGAAATCGGAGAAAAAAGAGCTGAAAAGTCCTGAGAAAAAGACGGACAAGAAATCAGAGACCGCTGATAAGGCCAAAAAACCTGCAAGTAAACCCTCGACCAATGGGAGCAGTGCCGCACCAAGCAAGGACCTGCCCAGTCCAGACAAGAAGACCAAGCCTGTCGCCGGGGCAACCAAACTGAGCGCCGCTAAGCCACGGCCGAGCTCGGCAGCATCCACTGGTGCTGCCGCCCCCAAACGCCCCaccccttcctccacctccaccaccacctcagccacCCTCCTCAACAAAAAAACGCCCGTGCCCAAGGCCCCTACTCCCACTGCTGGCCCCAAGCGGCCTTCGTCCACAGTCAGCCGACCCACATCCGcagccaccacctccaccactgaGCCACGTGAGGTCAAGCCCAAGacGACCACAGAGAGGCGTCCTCTAGTGCCAAAGGCCACCGCCGCCTCCACGGCTCGAACTGCTGCCCCCAAAAACGGCACTGCCACCACGGCAACCAGTAAACCAGCCACGGCGACCCGCACTCCCATTGCATCCCGCACTGCCGGCAGCGTACCCGCAACCAGACGCCCTCTGGCATCAAAGACTGACAGCAAGCCAGGAGAGGACAAGAAGCCCAGCACTCTGAAGTCAACAACAGCAGACTCCACCCGGCCCCGGACCAGCACCACCCGCAGCTCTATAGCTAGCACCACCAGCGCCGCCCCCCGTGTCCGCCCCTCCACCACCAaacctgccccctcctcctcctccacagtatCAGAGAAGAAGCCGGCTGTGCCCCGCGTCCCCCgtcccacctccaccaccaccacgggTAGTGCCAACGCCACGCGTACCACCTCCCGCCCAGGCACAGCCCCCGCACCAGACATTCGCAATGTGCGCTCCAAGATCGGCTCCACGGACAACATGAAGTACCAGCCCGGAGGGGGGAAGGTCTCTGGCAGGAGCGACGCCCTGGCCAAAGGCTCCTCCTCCAAAGAGACCAGCGAGGCCAAAGTAcagatactcaacaagaaggtGGATCTAAGCAAAGTGACATCGAAGTGTGGCTCCAAGGCCAACATCAAACACAAGCCTGGGGGCGGCGATGTGAAGATCGAGTCCCAGAAAGTGAACAACAAGGATCAGGCTAAATCCAAAGTGGGCTCAATGGACAACCTCTGTCATGAGCCCGGTGGTGGCAACATCAAGGCTGAGGGAGCCGAGAAGACGGCAGAGGAAAATGGGGCTCCCTCCAGTGATGCCTCAGCCAAGGTGCCAGGGCAGGCAAGCAGCCCCGCCCAGGAGAATGGGGTGAAGGAGGGTGCCCCCTGCGGAAGCCAGGGCATCCATGACCCCCAGGGCTTTGACTCGCGCATCCCTGAGACAAGCTTCTAATTCTTCTTTGTGCTATCCATCTACCCCCTTCATCTTAACCCCCTCAACATCTCCtatgtcccccactcctctctccttctctcctcttttccatTCTTTCTGTCCCATTTACACACTTCCTGCTGCAGATTGAGTCTTTCAAGCTCAACTTCCGCGAGAACGCCCGCTCTCGCACGGACCACGGCGCCGACATCATAACCTGGCCAGCCCCGGGAGACAGCCCCTCACACCCACAACGCAGCGTCTCTCTCAACGACTCCCTGACTTCTGCTGGCTACCCCCgctgccccctccctcctccccccactGGGACAGGGGGGCAACGGCACGCTAGCAGGACTCAGGTCATGACCCTCAATCCCACATCCAAACACCTCACCCATGTATCATTCTCTTACTACGCCTGAACCTGCGCTTACCTACCTACCGCTGTCCTGTGTTCCCATTGGATGAGCTGACATTGTACATACAGTAGACCAAGCTTCAAGCAGGTTGGGATAACATTGGGAGGGGAACGGAGGCTTGCCATGTTAACTGTGAAGTCTAATTCATGTTTCCTTACCTCTCCAAGAGCATAATATGGCAGTTGCAGCGTACAGTAGCAAAAATCAGTCTTATCCAGTATTACAGTACGTCCTAGTGCCGTTTTAGTGAGAGTAATCTACCAGGCATCGCCAGCCCTGAACACACCTGTTTGGTTCACATAGACACCCCCAATGGGAAACCTTCCTAGACTCACCTGTGGGTTATGTACGCAGACTAATATGTGTGTAGAGCCCTTTTACTTGTCAGCATGTAGGGCTGTGGTGTGTTCCCAATAACCATTGATTAATTGACTCACTATTCACCAACCATCGACTCATTCACTCACTgcctcacctccctcctctctcatatCCATGTACCCAGAGTCCAGACCCCTCTTTTTCACTGTCCAAGGGTTAAATACCTTTTGTTTTTAAAGAGCACTCACAAAATATTAGTAAACTAGTAGACTGTACTTGAACAGTAGGCTATTTAACTCTCTTTTAAACGGTGTGTTTGTGATGGTGTGTTTGATTGAATAATACTGTAACAATGAGCTGTGGCGTTCTGTTCTGTTTACTTTTACATTAGTTTATTTTCCTCATCAGCTTAGTTTTAAGGTTTGTTTCATTGTTTTCTTCTTTCGTTTTATTTCTCGTGTAAGAAATACGGTGGATGGTCTCTTTACCAACAGGGCTCAGAAATCCTCttgaatacacacacatatatttttCTCGAAACAAAGGCACACAGTCATGAAGATGCGACTCCGTTTAGGGCGTTGAGACTGAGAAAGCATGTCAGGGGTGTGACGAGGGAGACAAAGACAGATCAAAAGGGAGACAGCGAACACTGAGGCGTAGTGACGTAAAGACGTGTCCTCTTCAGTGTGTTAAGACAACAATGTGATGTGTCAGAATAGTGCTGTCTAGGAAAACTCCAGAGGGTAATAGAATGTTAAGATGAATTATGTGAAGGAAAGTGTCTTGGAGGTTGGTGGAGCGATGTGTCTTGTACTGTACGTGCCTCCTGTCCTGCTTACCTGAAACTGGGATGGGACTCGGGCTGGAAGCTCAAGCTGATGGACCCTTGTCCCTGgagtgacacagacagacagaatgtcaTAGTTGAAAATGAAACCGCATGGTGGCACTGTAGTTTGATTAGGATTTAGAATAATCGTATTTTGTGACCAGTCCTGCTTGTTGTCCCATTTCAGCTGTTTTCTGAGGGTTCTGGTAAAGTGTTATTGACAGTAATAAGAGGACTTGCTGAAGGACTTGTTGGAACATTATTAGAGGTTCTGCTGAAGGACTTATTTTTGTCAGGCTGTTGGCAGTGGAACATTCAATGTGGCTTATTTTACTTGTAGCAATGTATCCAACAATTGCCTCCAATTGCCTTTTTCGTGCATGGCCAGGTAATATCATGCCCAGAGCAGAAAGCCTATGTGCATTATGACTTGCAGTGTTGTGGTTCAGTATATTTGTCCTTGGGGGAAATAGTCGGTGTTgtatcttcttttttttaacaGTGGGCAGGAAGAAAATTGGGGGCTGTCAATTTGATTCTAAATTCTATTGCAGTTTGGTATATTATATAATTCAGCTATAAAATCGTcatgttttttaaatgtgttgAGCTCAAAATAAGGACAGTACACCAGGTACTCTTTTTGAGgaattattcccccccccccccctagataTGGAAACTATTAAAATGACCTTAAATTCTTGAATATATTAAAGAGGGTGTGTAATGGTAATGTGTATTTGATGAAAGGTAAAGCTGTCTCTCCACACACTGATTTACTCCCATATTGTTCCTAGGATATCCATGAAATATTGTTTAAAAGACATCGtgattaatttaatttaaaaacataattacaATCTATTGAGATGTGTGGAATAGGCCTAATACCCAGAGCCAAAAAAAAAgtcaatttaaatgttttaagAAAATGGTCAATACATTTTATTGTTATCAACAAGATGTTATTTTAAAATTGGAGAGGTTTGTAGATATTGATATTTGAGCGGTTTTGTAGTACAGCAGTGATTGTTGTAAGAGGAACGGCTGCTGAGGTGGATCGTAGTATCGCCTCTGATCCTCATCTGATAGAGAAATTTCAATATTACCACTGATCCTGACTTACCACACTCACTGGTATGTTCTCTCTGAGATTGCACACGGTTGTATATAAATAGATATTTTACTGTTTTATACACTTTCGCCAcaggaaaaaaaataataatatgaaaACAACAATGATGGTAATAAGGATGTTACGTACAGCTTTTATGTTAATATGTCTTTAACAGTTTTAATGGTAAGGGGTATCATTATTGTTATTGAGCAAGTCTGCCTTTTTTCCAAGAAAAGGGCTGCTGAAGTGAAAGAATGTTATAGAGATATAATGTTCTATAGATGCAACACTTTTGTATTTATCTTGTGTTCCCATAGCGACATGGTGGTTGGGTCAGTGGGGAGTGTTTGAGGGGTTATACACATGGGAGGCATAATGAGGTCTGGTCCAGTTTGTGGATTGCTGTCTATTGAGCAGTGTTTATTTCACAAATTGTAAGAGTTTTGTTAACTTTCACATAACCTTTGTCCATCCCCACAACCCCAGTCTTAAGAAATGAAAATACTCTTATTTACAGGTAGACCTTCAGATGTGATTTTGACATTGTAGGATACAGTGACCTTCTTGTGTTGATTTGAAAACAAGATACGTGCAACATGGAAGGGATTGAAActaatgtgtagaattgcactgTATAACATGCCATTGTGGTGCAGGGCTTCCTGTTAAAGCAGGAAGTGGGATTAGAAGTCAGGTCATATCTGTCATTTAGGAATATTGTTGCCCTTGccctacacgcacgcacacacagaaacacacacacacactctgtcctggAGTGTCATGGAGACGTCCGCGCCCTAACACACCCTTATGTAAGGCTAACAGTAGCTGTCAGGTTTGGCTTGTGTTACTTAGAGCTCTCCAGTAATGCTACAATGAGCTCCATAGATCTGCTTCTTCCGCTAGCGCACACCCAATGTGCAAGTGTACTCATAGAAAACACCTATTTAAGAGCATGCAGAAACAAATGGAATGTGTTCCGTAGACTTATGTCATTCGCAGAATTTGTCATTTGCagaatttgtttttttgtttttcattcaTTTTGAATTGACATTTTTGGTTTGAAAGAAGTGTTTATTGTGATTAATTGTTAATTAGTGATGTGATTATTaaacattaaaaaacaaaatgtttaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449369 lncRNA downstream 187915 20981780 ~ 20986678 (-) True G1268618
TU1449358 lncRNA downstream 202950 20971336 ~ 20971643 (-) True G1268610
TU1449352 lncRNA downstream 212268 20962089 ~ 20962325 (-) True G1268604
TU1449290 lncRNA downstream 292793 20881451 ~ 20881800 (-) True G1268570
TU1449288 lncRNA downstream 300012 20874361 ~ 20874581 (-) True G1268568
TU1449526 lncRNA upstream 18269 21314995 ~ 21398420 (-) True G1268745
TU1449580 lncRNA upstream 86630 21383356 ~ 21383844 (-) True G1268793
TU1449757 lncRNA upstream 255918 21552644 ~ 21552950 (-) True G1268964
TU1449759 lncRNA upstream 257329 21554055 ~ 21554300 (-) True G1268966
TU1449792 lncRNA upstream 303960 21600686 ~ 21600895 (-) True G1268998
XR_002468621.2 mRNA downstream 137091 21018809 ~ 21037502 (-) True LOC110489781
XR_002468620.2 mRNA downstream 167321 21002118 ~ 21007272 (-) True LOC110489780
XM_021562686.2 mRNA downstream 219786 20948900 ~ 20954807 (-) True ngdn
XM_021562677.2 mRNA downstream 268117 20904229 ~ 20906476 (-) False thtpa
XM_021562708.2 mRNA upstream 15493 21312219 ~ 21614730 (-) True kcnh2b
XM_036945611.1 mRNA upstream 320693 21617419 ~ 21680364 (-) True scospondin
XM_021562714.2 mRNA upstream 556974 21853700 ~ 21864112 (-) False LOC110489796
XM_036944058.1 mRNA upstream 556974 21853700 ~ 21864113 (-) False LOC110489796
XM_036944059.1 mRNA upstream 556974 21853700 ~ 21864113 (-) True LOC110489796
TU1449275 other downstream 214504 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 883920 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 906105 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 1720823 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 2065236 19108559 ~ 19109357 (-) True G1266471
TU1450121 other upstream 505961 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 2416629 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 2416629 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 2416629 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 2416629 23713355 ~ 23728939 (-) True G1271421

Expression Profile