RNA id: XM_021562711.2


Basic Information

Item Value
RNA id XM_021562711.2
length 3316
RNA type mRNA
GC content 0.52
exon number 5
gene id aoc1
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21707736 ~ 21713134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACATAAGTCCCAGATTGAAGTGAGGACCCATTGGTGtgctgctgagaacagaacagactTGACAGGGGTCGATACACATGCAACATTAACAGAGACAAggcagaggggaggaaaggaaacATTGTACGAAGATCCCCACTGCATGGAAGCTGATCCATACTGTTAGAAGACCAGAGGGAGCGGAAAAAAAGAGTGACATGGCCAGGTGCTGCTGTATGCTGGTGCTGCTGGTTGCTCTGGGCGTGTGTGAAGCCTCTCGTGGCCGGGAGTGGGCTCACCATGGAGCCTCCATGTTCGCCGACCTGACCCCCCGTGAGATGCGTGACGTCCGGGACTACCTGCAAGGCAAGCCAGAGCTGGGTCTGACAGCGACCCGGGGCAAGGACCTGAAGAAGAACAGCATCCTGTTGATGGAGCTCCACCTGCCTCGGAAGCACGAGGCCCTGAGGACACTGGACCGGGGCCAGGCCAAACCCACACGCCAGGCCAGGGTGGTGGTGCAGTTCGGGAACCAGGCCCAGCCCAACATCACTGAGTTCATCGTGAGTCCACTGCCCTTCCCTACTTCGTACACGGGGAAGACTTTCAAGGGAGACCGGCCCATTCGGTTTGAGTCGAGACCCATCACGGCGGCGGAGTACTCGCACATCATTGACATCTTGCAGAAGATTACTGCCAAGGTCCACAAGGTCCTGTTTGAGACCACAGGCGGATTTTCCTTCCACAACTGCACCAACCGCTGCCTGACATTTTCGGACATTGCGCCCCGTGGTTTGGAGTCGGGTGAGAGGAGGACCTGGATCATGCTGCAGAAGTTCGTAGAGGGCTACTTCATCCACCCTGTGGGCTTTGAGGTCCTGGTGAACCATAAAGATCTGGATCCCGAGCGCTGGACGGTGGAGAAGGTGTGGTACAACGGCCAGTACTTTGACAATGTGGAAGAACTGGCAGAGCGATATGAGAAGGGAACGCTGGAGAAGGTCCAGCTTCCTGACCATGACGATGAAGACTTGTACTCCACTTACATTCCCCGTGGGCACAGCAACACGCGCACCGACATTCATGGGCCCAAGCTGGTAGAGCCCCAAGGACCTCGCTACCACGTGGATGGGAACTTTGTGGAATACGCCGGCTGGTCCTTCGCCTTCCGAGTCCGCTCATCCGCCGGCCTCCAAATCTTTGACCTGCGCTTCAATGGAGAGCGCATCGCCTACGAGGTCAGCCTCCAGGAGGCCATCGCCTTCTATTCGGGTGACACCCCCGCCGCCATGCAGACCAAATACATAGATGCTGGCTGGGCCATGGGAACTGTGGACTACGAGCTGGCACCTGGCATTGACTGCCCCGAAATCGCAACCTTTCTAGACCTGCACCATTACTACGACACGGACAAGCCCATGCGCTACAAGAACGCCTTGTGTGTGTTTGAAATGACCACAGGGATGCCTCTGAGGAGGCACTTCAACAGTAACTTCCAGGGGAGCTACAACTTCTTTGGGGGTCTGGAGAACCACGTGCTGGTGCTTCGTACCACCTCCACCGTCTATAACTACGACTACATCTGGGATTTTCTCTTCTACCAGAACGGAGTGATGGAGTCCAGGGTCAGTGCCACCGGCTACATCCACGCCACCTTCTTTACGCCTAACGGACTGCACTATGGCTCTAAGGTGTATAACTTCGTACTTGGTAACCTGCACACTCATCTCATCCACTACAAGGTTGACCTTGATATTGCCGGTCGGGAGAACAGCTTTGAGTCGATGGACCTCAAGTATGTGAACTTCACCAACCCGTGGAGCCATAAACATTCTGTCGTCCAATCCAAGCTCGTCAAGACGCAACACCAAACGGAACGCAGCGCAGCCTTCCGATTTGGCAAAAAGTTCCCCCGCTACGTGCACTTCTACAACCCCAATGAGAAGAACAAGTGGGGCCACCAGAAGGGGTACCGCATCCAGTACAACTCCCATGCCAACAGTGTGCTTCCCCGTGGCTGGAGAGAGGAGAACGGCATCAGCTGGTCCAGATACCCATTGGCTGTGACCAGGCACAAGGACAGTGAGCCCACCAGCAGTAGTATCTACACTCAGAACGACCCCTGGGAGCCTGTGGTCTCCTTTGAGGACTACATCCGCAACAATGAAGACATCACCAACCAGGACCTGGTTGCCTGGGTGACAGTGGGCTTCCTGCACGTGCCCCACTCGGAGGACATCCCCAATACGGCAACGCCCGGCAACTCTGTGGGCTTCTTCCTGCGCCCCTTCAACTTCTTCGATGAggacccctctctctcatcccgcAGTACCGTCATTGTCCGGCCAGACAAAGAGGGGAAGCCAAAGGTCCAGAGATGGACCCCAGAGGTCGTAGGTCATTGTGTGACTGACAAGCCTTTCTTCTACAACGGCACCTACGCAGGAGTCTGAGGGGCTGGTGTGAGTGACAGGAAAGACACAAAATGGTGGTTCCATCCTTGCGTCTGAGTGGTGCCAAATTAATGTGAGCTGACATTTAAATCTTGACTCCGACATTTAACTTAAAAATCATTTAAATGCAAAAGAATGCATTATGACACAGGCATTAACAAAATTTATATTATGTTGATATCTTACCTGAACCTGTTGAAATGTGAAAGAATAAGAATATTTGGTATTTTTTTTACGTATTAATTTTTTTTTATGAGTACGCAAATTGATTGAAGCAATTTACCATTCTTATCCATAGGCACATTTCAATAGAAATCCTCTATAATCACAACTCACAGACAAGTGTTGCCATGTATATACTTATGTACCCGTCCCAAATCTAGCAGAATGATTGTTTCCTTTTTACTGTGGTTGTCATGCCAACCTTATTGTGTGTGAGGCCTGGGGGTCAAAGCACTCAAACCCCTGTTGGGTGAGGGTCTCCATGGACGGGGTTTAGTTGCTCTGAGCATCCAGGATGCAGGATGCCGGGATCAGCCACCGTCCGCCGGGCTCCTGGATCCCAGCAGGCCTGCATGGCGAGAATGTTTTCACTGGGAAAAAGTTAGCTGAGCAAACAGGCCGATCCGGAACTGCCCCACAAACAGTCCAGGATTCACCTGCACCATTGTCCGGGGCAACCAGCTGCCCCCACGCAACATGCAGGGAGTGAACCGATCGAACATTCTACAGTGTTTTAGAACTCAGTTttccctccatttgttttgtctttgggaCAGTTTTCCTTTAGGTACTCCTGACTACTTTTAATTAGATACAATAAAGAACTAACTGCATTAAATCAAACGGTATAACATTTTGGTTGTATCGCTTCTTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449843 lncRNA upstream 49933 21657374 ~ 21658124 (+) False G1269040
TU1449844 lncRNA upstream 49933 21657374 ~ 21658124 (+) True G1269040
TU1449061 lncRNA upstream 102650 21605100 ~ 21605407 (+) True G1268375
TU1449057 lncRNA upstream 105736 21601108 ~ 21602321 (+) True G1268371
TU1449037 lncRNA upstream 132182 21575670 ~ 21575875 (+) True G1268352
TU1449899 lncRNA downstream 14086 21727220 ~ 21727523 (+) True G1269086
TU1449886 lncRNA downstream 75504 21788638 ~ 21794253 (+) True slc12a7b
TU1449926 lncRNA downstream 84386 21797520 ~ 21797808 (+) True G1269113
TU1449929 lncRNA downstream 86419 21799553 ~ 21799778 (+) True G1269116
TU1449930 lncRNA downstream 86729 21799863 ~ 21800410 (+) True G1269117
XM_021562718.2 mRNA upstream 58091 21648137 ~ 21649966 (+) True LOC110489799
XM_021562692.2 mRNA upstream 546242 21145517 ~ 21161815 (+) True LOC110489784
XM_021562693.2 mRNA upstream 577752 21107774 ~ 21130305 (+) True LOC110489785
LOC110490945 mRNA upstream 615622 21084390 ~ 21092435 (+) True LOC110490945
XM_021562691.2 mRNA upstream 633957 21055658 ~ 21074100 (+) True LOC110489782
XM_021562705.2 mRNA downstream 16621 21729755 ~ 21794251 (+) False slc12a7b
XM_021562701.2 mRNA downstream 16622 21729756 ~ 21794251 (+) False slc12a7b
XM_021562706.2 mRNA downstream 16622 21729756 ~ 21794251 (+) False slc12a7b
XM_021562702.2 mRNA downstream 16623 21729757 ~ 21794251 (+) False slc12a7b
XM_021562703.2 mRNA downstream 27555 21740689 ~ 21794251 (+) False slc12a7b
TU1448574 other upstream 866659 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 2027952 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 2845546 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 5813893 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 5971640 15735930 ~ 15736417 (+) True G1261980
TU1449889 other downstream 73087 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 1419725 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1664174 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1693526 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1732704 23445838 ~ 23450473 (+) True G1270669

Expression Profile