RNA id: TU1449886


Basic Information

Item Value
RNA id TU1449886
length 3975
lncRNA type sense_over
GC content 0.42
exon number 2
gene id slc12a7b
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21729755 ~ 21794253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAGAGGGTCAGGGTTGTGTTTGGGTTGAGCCTGCTCTTCTTCACTGTCACCCTTGTGTGGTATAGGAACCAGTCCAACGTGCGCCGGATGCACACTGCGGTCAAGCTGAACGAGGTGGTGGTCAACAAATCACAGGGAGCCCACCTGGTCCTGCTCAACATGCCGGGACCGCCCAAAAACAGAGGGGGCGACGAGAACTACATGGAGTTCCTGGAGGTTCTGCTGGAGGGTCTCAACCGGGTCCTCCTGGTCCGTGGGGGCGGACGCGAGGTCATCACTATCTACTCTTAAACGCTTGCGGCCACAAAACCTTGGGGTTACTGGGGGATTGTCAGAGGGGGGGCCATGTTACTGGACAGAGGGCTTTTTAGCCTCGGAAGGGATGACCAATCAGGGCAGTGTGATGTCATAGCATCAGCCTGATTCGTGGAAAGAGCACATGTATCCTGGGGCCTATCTATCACGTCGACCGACTGGAGGATAGAGCATTCTGACACTAACGTTTTAATCTGACACGTGTTAATGTTTATTGTATGGATGTTCTTCCTTTTTTCCCCCTTCACTCCCTCTCTATGTTCAGTATTCATGTCTGTTCATGGTAATTGTGTATCATAATCAGCAGAGGACCACAGGGTTAATATGGACAtgggctgtgtctgaaatggcatccgagtccctatatagtggactattTTTGACCCTTTGGCCCTATATCATTTCGGACACAGCCATAGTCTCTCTAGTTTGTCCATCTTTGCCCTCATTTTGGTTTTGGCTTTGTCCTCATCTTTCAAGTACGATTCAGATTGAGGAGGCACAAAGTCAATGTGCTGCCTTTTAAGATCTCCCTTAGCTCAGAACCAAATCGACTTTGAATCCTGAAAGAGATGAATACGGTTCCTGCTCTCACCTATTATCTAAAAACTCAATAGGAATGTTGTTATCTAGAATAATATGCTTCTGTGACTCTTTCCAGTATCCTAGCCCACAGCGGAGCTCTGTTAGAACGGAAGGAGGCAGCAAGTCCAAAAAAAGCATACTTTTATTCTGTTCCACAGATCAGGATGTTGCTATGGCTTTCCAAAGATCCATTGTCCCTTGGTTATTAAAGGGGGGGGGTCATATTTTGGAGGTGTTCTGCCCTACTGGTATCCTCGTATACCCCCTGAAGTTACTCACAGCGGAGTTCAGTCAACCTCAATTCTAATTGAGGAAGTTAGGGGGTCTAACGCAGAAGCGGATCCACCTTGTTAATCCATACTAGGACTAGGGGGAACTAGGTTTATTCATGTATTTAATTTGTTGTTAATTGTCGTCTTGTTGTTGAGTGCAGCACAACATCTGAAAGAGGTCTGTGTATGGGGTGGGGAGCTTTGGCAAGGATAGGCCCAAGGATTTTAATGTGCAATAGATGCTGTTGATGTGGTGAATTGCAGACGGGCCTGAGACACAGAAGGTGGTCCACCTTGCCTGGTGGGGTCTCCTTAATTGACCCTGTTTTATTGGCTCTGTAACATTGGTCAAAGTCCCCGACTTCAGCCATTGCTTTAAGAAATAGCCGTAGTATATATCCTAGTATTTAGCCTATGTTAACTGTGTTACACCCAATACACAGCATAAAGCATATTTATTTATGTTGGGATTATTGGAAATTGTATGCAAGGGTGCAGGGAATGAAAGTAGTTTTTTGTAAAGAGCCTATTTTCAGGTACAGGAGTGCTGCTTTAAATTCACGTACCGTTCCACAGCTTCACAAATCTAGGACAACTGGGGTCATCAAGGTATTTCACCTACCAGAGCCCATTGGATATATACATCAACATATAGGAAAATCACGAGATGGTTTGACACTAACACTAAATCTGAATTAATCATCAACTCAAGAATTTGTCCACTTCTCTGTGACCCTCAAATCGGTCATTGTGTTGCTTGACAGCTTAAACAGAAGGAAATGTGCTTGTTGGAGTCATCCTCTGATGGCCTAGCCACTGTTGACTGTTCGGGTACTGTAGGCTCATTTTCAGCACGGTGTCGTTAGAGACATTGACACTCAGCGTTTTGCACAGTCTTCGATGTACAGTACTGCACTGATACGGTAGATTGCATTGCATTGTTTGGCTCTGATAATAGAAGTATTTAGGCTGGGATGTTGTAATACAGTGATGCCACCACATTCAAATGGCTGTGATTTGTGAGTATCACGTCTATCACAGGACACCAAACCAAGATTCTGTACTGGAATAGAAAAGTCTCATTATGAAATAGCTATGTCCCATGTTGTGCTCCGAACCAtcaatgttttctctctctgatgAGCACCATGCAGAGTGGGTAGGTGAGTAGAGTTTGTGAAAACATGCGGTCTCATAGGTCAATCATATAGGTGTGGTCTGTAGGTATCAGTTGATCATACTGTTCAATGTCAGGATTTGTTCTTATGTTATTTGTGTTTTAATTGTACGTGCATATTCTCTAGGTTTCATCTTTTCAACTGACCATGATGAATCATTTTGACTTTGTATAGGAAGAAACGTGCCAAAAAGACTAAGGCTGAAAGTATATGCTTGTCAATGTCAGCCACAGTACACGCGCCAACTGTCGCCCGTGCTTGTAGGGTGGGGGAAAAAGCAAGATCACTTTCAAATTGTAAATACAATATACGTTATTATAACCAGTTAATGCTTTTGATTTGGAGACGCACAGAGGTCAACACATTTGAACTCAAATTCTTACCTAACAGACCATTTTGATGAGCAACACTGAGTTTGTGGTTACAAAATGAGTTCCTTTTAGGCTACATAACAACAGTGGAAGGAATGGCATCTGTGATTTCTAGGGCATGTGAAGCCCAGTGTTATAGGAAGTAGGAAGTCACCAGATATAAGAAACTATTGGGGCAAAGAAAGGAAGGAATCACTCATCAAACTCTTCTGTATTTACATCCACAGTTTGTTTTGAAACCTTTTCGTAGCTGTGCAGTATTTTATAACCAGAACATTGTATTTTTCTACAGTATGTCATGAAAACAACCTGTCTTTTGTTGTAGCGTCGACCATCAGACAATGTTTTTATGTTTCcggtgtgtttttgttttgtttttccgaCATACACCTGTGTAACTTGTAGTCATAGTGTCTGTTTGCACTTAACTGTTATGTTATACTTGATTTTCTGATAACACTCTTTAAGTGTTACTTTTCAGGACTGGAGTATTTCGATTTTATGGAGGTGTGGGGTGgatgggggggtggaggaggtatATATTTCAAGTTGTTTGCAGAtctgttttgtttgtgtttttctcaAACACATTGGAAACACAGACTTTGGCAGAGATTTCACCGAAATGATTTTTGAGGAGCCAGTTGGAGGATGGGTTATGTTACTGATTTTAAGttaattgaaaatgtatttttattttaggtTTTTAGCCACCAAAGATACAATCTTTGAGTCTGTGATATGAAACGTCACATTGTTAATAGTGTAAGAAATAAAGTTTAACTAAAAACAGCACAGCTTGCTTACTTGAGCTGAATAGCAGCAAAAGAGATGACTTCAAACCTTTTTTAGAGGACACAAAACTAAGACTTCTGGGTGACAGTATAGCAAGCAGTATATGTTCCATTTACCTGGTTAAAGTGACGAGAGAATGTAATCTACCTCAAGGGGGCCATGGAGGCTTCATCGAAGGAGAAGCAACCTGTCGAATCgctttctcttttctctgtacatAGTTACAATCTTTTATATGAAGCGATTATTAGCGATTGGGGAGTGAGCCTCCATTCTGAGGGAgaaccagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacacctcACATATTGTACTCTAGTAGGAGTTACTTTTGGGAGCATGCGTAGCGAAGGGTAGCCCTTTAAATTATATCTGTGCCTCTGAGTAATGAataaataaaagtgctgaaatatGTCTGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449899 lncRNA upstream 61115 21727220 ~ 21727523 (+) True G1269086
TU1449843 lncRNA upstream 130514 21657374 ~ 21658124 (+) False G1269040
TU1449844 lncRNA upstream 130514 21657374 ~ 21658124 (+) True G1269040
TU1449061 lncRNA upstream 183231 21605100 ~ 21605407 (+) True G1268375
TU1449057 lncRNA upstream 186317 21601108 ~ 21602321 (+) True G1268371
TU1449926 lncRNA downstream 3267 21797520 ~ 21797808 (+) True G1269113
TU1449929 lncRNA downstream 5300 21799553 ~ 21799778 (+) True G1269116
TU1449930 lncRNA downstream 5610 21799863 ~ 21800410 (+) True G1269117
TU1449932 lncRNA downstream 8567 21802820 ~ 21803102 (+) True G1269119
TU1449977 lncRNA downstream 73906 21868159 ~ 21883333 (+) True G1269161
XM_021562713.2 mRNA upstream 75504 21707736 ~ 21713134 (+) False aoc1
XM_021562709.2 mRNA upstream 75504 21707737 ~ 21713134 (+) False aoc1
XM_021562711.2 mRNA upstream 75504 21708057 ~ 21713134 (+) False aoc1
XM_021562710.2 mRNA upstream 75504 21708380 ~ 21713134 (+) True aoc1
XM_021562718.2 mRNA upstream 138672 21648137 ~ 21649966 (+) True LOC110489799
XM_021562724.2 mRNA downstream 9899 21804152 ~ 21844069 (+) True si:ch211-276f18.2
XM_036944062.1 mRNA downstream 115379 21909632 ~ 21991990 (+) False LOC110489791
XM_036944060.1 mRNA downstream 115380 21909633 ~ 21991990 (+) False LOC110489791
XM_036944061.1 mRNA downstream 115380 21909633 ~ 21991990 (+) True LOC110489791
XM_036944063.1 mRNA downstream 202565 21996818 ~ 22054060 (+) False LOC110489805
TU1448574 other upstream 947240 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 2108533 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 2926127 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 5894474 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 6052221 15735930 ~ 15736417 (+) True G1261980
TU1451171 other downstream 1338606 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1583055 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1612407 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1651585 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 1872218 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile