RNA id: XM_036944064.1


Basic Information

Item Value
RNA id XM_036944064.1
length 4277
RNA type mRNA
GC content 0.52
exon number 20
gene id LOC110489805
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21996818 ~ 22054060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGAGAGCCACGCCTGAGTGTGAATAGAGTTAAGATGAACTCTTCTGTCATTTGGGGACGATTTCTACTTTTCTCAGGCAAACGTTAGTCTTGTTAATTGAGTGCTCGCCACCATAAAAAGTGAATCTCGTTTGAAGCACCTACTACAGCGATTACCAAGCTACTGCCCTGAGTCTATGAATGAGCTTTGGATTTGCATCAACTCCACACTACCTGGAGCGTCCAGGAAGTCTGATGGTTGGGTTGGCCTTGGCTGCTGTGAGCTGGCCATCTCGGCAGAGTGCCGCAGAGAGTGCAAGCAGGCATCATCCAAGAACGACATcacaaaaatatgcaaaaaagaCACAGAGAAACCACTCTACAGCTGTATCATCAAAAATGAGATGGGCTCGGTGTGCTGCAGCTACGCAGGGAGACACACCAACTGCAGAGAGTACTGCCAGGCTATCTTCCGGACAGACTCCTCCCCCACCGTCTCTCAAATCAAAGCTGTCAAGGAATACTGCCAGAGCATCAGCCCAGAGCTCATTGGCTGTGTGGGCAACTACACCAAGTCTTACCCTATTAGAAGCCCTATAGACAGCCTGTACTGCTGCGACCGGGCAGATGAGCCCCACTGCCAGGTGGCATGCCGGCGTATCCTTCGCACCATGACCACAGAGCATGAGATCATGGAGGGCCTGATCGATGAGTGCGGCAGCCAGCCACTGCCCCAGGACCCACTGTGGCAGTGCTTCCTGGGCAGCGCCCACCCCCCAACCAAGAGCGAGACGGAGACCTCCCCCACCGCCAAGATGGACGGCGCCAAGCTGCACTGCTGCTCCAAAGCCAATACCTCATTGTGCAGGGATATGTGTCAGGAGATCAGCACCAACTGGGGCACTCAGACATGGCAGGAGTTTGACCAGATGTGCGAATACAACCCTGTGGAGACGGATCTGATCACCTGTTTGGCCGACGTCAGGGAGCCCTGCCAGCTAGGCTGTAAGGACCTGGCCTACTGCACCAACTTCAACAACAGGCCCACTGAGCTGTTCCGTAGCTGTAACATCCAATCAGACCAGGGCGCCATGAACGACATCAAGCTGTGGTCCAATGGGACGATCAAGATGCCCTTTATGAACATCCCCGTCCTGGACATCAGGAAGTGTCGTCCGGAGATGTGGAAGGCTGTGGCCTGCGCCCTGCAGATCAAACCCTGCTACAGCAAGTCCCGCGGCAGCGTCATCTGCAAGTCGGACTGTGTAGACATCCTGAcacagtgtggtgaccacaaacGCTTCCACGAGGGACAGACAGCCGAGCGCATCTGTGAGATCCTGTCCCCCATAGACGACCCTGAACGCTGCATCCCCCTGGAGAGATATCTCACTCCTAGCTCCCTGGGTAACATCATTGAGGAGGTCATCCACCCCTGTAACCCCAACCCCTGTCTCAGCAACCACCTGTGTGAGGTGAACAGGAAGGGCTGTCAGCCAGGACAGGACTGCCTGCCCTACTTCTGTGTGCCTGgctgtAAACTGGGCGAAGCCTCAGAGTTCCTGGTCCACCTGGAAGCCCGTATCCAGGTGCCCATGCGTAATGGGCAGGCGGGTTGCTTCGAGGTGTGTACCTGTGGCCAGAGTGGAAGGCTGGAGAACTGTGCTGAGATGCCCTGCATAGACACCTCCAAGACTTGCATTGTTGGGGGACAAAGAAAAAACCATGGGACGTCCTTCAGGGTAGACTGCCACCCCTGTTCCTGCTTCGCTGGAGAGACCATCTGCTCCACCCGCCAGTGCCTCAGCACCGACAGCTCAGACGAGGACCGCCGCCGcttcactgGGCTCCCATGTGGCTGCCCTGACCGCTTCGTGCCAGTGTGTGCCCGTAATGGCCGCACCTACCCCAGTGCCTGTGTGGCCCGTTGCATGGGCTTCAAAGACAACCAGTTTGTGTTTGGCCACTGCCGCAGCAGCGACCCCTGTTCCCCCAACCCCTGCCAGAAGAACCAGAGGTGCATTCCCAGCCGTAGAGTGTGCCTTACAGACATGGTTGACTGCCACTGTCCCCAGTATGAGTGTGTTGGTCGTCCCTCCGGCTGTGGCAAGATTCACATGGACCTGGCCTGCGACACAGACAACGTGGAGCACCCCAACCTCTGTCAGCTCCTCCAGATGGACAAGACCCTGGCCTATATGGGCCACTGTCAGGATGCCTGTAAAAAGGCGCGGCCTGTGTGCGGCCACAACGGCGAGACGTACAACACAGTGTGCGAGGCCTACTCGGACCGCGTTGCCGTGGACTATCAGGGGCGGTGCCACGCCGTGGGGGCGGTGGCAGAGTTTGCCTCTGACTCAGGCTGTGACATGATCCCCTGCCCCGCCCTGTCCACCCCGGGTTGCATCCCTGTCACACCACCCGGTGCATGCTGTCCTCTGTGTGCGGGCATGCTGCAGATCCTGTGGAACAAGGAGCAGATTAACAACTTCGCTAAGTTGAACAGGAAGCAGCCAGTGACGGTCCATGACATCCTGAGGATCCTGCGTCTCCACATCTCCGTGCCGCAGTGTGACATCTTCGGCTACCTGAGCATCGACTCAGAGATCATCGTCCTCATCGTCCCAGTGGACCAGCAACCCACCCCACTGCAGATTGAAGCCTGCAGCATGGAGGCGGAGAAGATTGACTCGCTCATCAACTACGGCAGCCCCACCCTGGTCtcccatgttcctctgtctgcctTCCTCACCTCCGAGGTCTCCATCTCCACCATCAGGTCCGCGGGCCACGCCAGCTCAACGCCCTCCTCCCTGCCCATCTTCTTCTGCCTCGCCCTGGGCCTCCTCCTCACTTTGGCACCAGGCCTATCCGAGGCCACGCTAGCCTCTGCTAGCCAGCCAGGCCCCGCTGGCAGGAGGCTGGGTGTGTTGTGGAGTATTCTGACCCCTTCTCGGGTCATTGCCTGACAGGAAGCATCAGCCTGTAAAAGCCTTGACAATCAATCCCATTAACTCTACTGCACCAGCGTCAACACAATCATGGACGAGAAGCTATGAGATGAATCCTAATTGAACAAGAGAAGCGGAGACACAATCACATTCCAGCTTTGGTTCCACAGAGCTCTATATATATCGTTATAAGGAAGATGAGTTTTATCACACAGGGTTTTGTATCTGTTTTATTCTGCAACAgaagctctctcctcctctaaagCTGTGGAGTGGGGAGTTTGTGTGGGTTTTTGCCTGCGTGCTTGTGTTTATGCGTATGTGTacgcacacgtgtgtgtgtgtgtgtgtgcgtgacacagagagagagaggaaccaggtggTTAAGTCTCAGAGGGGGAGTAGGGTCTAGATGTCAGACAGGTGCGCTCCCAAACACTGACATTTGTCCCAGATAATCTCAGGGGTGTAATTaccctcctccgcctcctccccctctcctcccctttctcccacTCCCATTTTACATTTCTACTATTGTAAATAAAGAGCGAGTGGGGAGGTGCTGACTGAGACAGTAATACTGGAACGTGAAACAGGTCAAAGGCAAGCAAGCATTCCCGCTCCGTAGGCTGAAAGACACAAAAGGGATTCTTGTTGTTCCTCTAGTGTAGATAAGATATCAAATAAGGAGGAACGACAGccatgtttttaatgaaaatgaCAATCATCACTTTACCCATGATACACATGGGTAGGAACAAAAAAAATAGCAACAACATGCTTTGCATATAGTTCCTATGTGAAATAAATGCAATAACTTTATAATGTTGATAATAATTATTCCGAAACTATTCCGAAATGTTCTATATTTCAAATAAGATATGGATCGAGATGTGATTCAATATGTGCcattttctaaatgttttattCTTGCATGATGACAATTATGAAGTGTTTTTACTCCAGAATGTATTGTACTATGTTTGTCCTGTCCCCACGTTTGATTTTATGTTGTCTCTATGCCTACGCAACACGAAGTGTCCCCGTTTTCTACAGTATTATCGTGCTAGGCAGCTTTGTAGCAGCAAACCCTTCAAGGGTCCTTGTAGTATTGTATCTGTTTCCGAgggatttaaactcagttttttgttgtttttatgtTATCAAGTGTTCATATTGCCAATGTTTAGAAAGAGTATAGCTGTAGGCACTTAAGCATTATGTTAATCATCACTGTATTGCATCATTGTCTCGGTGGAGATGGCAGTACTTGCAATGTGTTTGTAAAATGCCAACAGAATGCATATTTTATAAAATATAAAGTCCTACAATCAAACAGAAG

Function

GO: NA

KEGG:

id description
K17461 RECK, ST15; reversion-inducing-cysteine-rich protein with kazal motifs

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1450218 lncRNA upstream 90880 21923345 ~ 21924507 (+) True G1269351
TU1450204 lncRNA upstream 108841 21905960 ~ 21906546 (+) True G1269340
TU1450197 lncRNA upstream 112585 21902601 ~ 21902802 (+) True G1269333
TU1450194 lncRNA upstream 115152 21899982 ~ 21900235 (+) True G1269330
TU1449987 lncRNA upstream 129988 21885080 ~ 21885399 (+) True G1269171
TU1450398 lncRNA downstream 72508 22126568 ~ 22130052 (+) True G1269513
TU1450516 lncRNA downstream 99118 22153178 ~ 22153796 (+) True lancl2
TU1450636 lncRNA downstream 262287 22316347 ~ 22350514 (+) True G1269737
TU1451093 lncRNA downstream 529504 22583564 ~ 22583772 (+) True G1270180
TU1451287 lncRNA downstream 768601 22822661 ~ 22823010 (+) True G1270359
XM_036944062.1 mRNA upstream 23397 21909632 ~ 21991990 (+) False LOC110489791
XM_036944060.1 mRNA upstream 23397 21909633 ~ 21991990 (+) False LOC110489791
XM_036944061.1 mRNA upstream 23397 21909633 ~ 21991990 (+) True LOC110489791
XM_021562724.2 mRNA upstream 171318 21804152 ~ 21844069 (+) True si:ch211-276f18.2
XM_021562704.2 mRNA upstream 221136 21755264 ~ 21794251 (+) False slc12a7b
XM_021562716.2 mRNA downstream 7724 22061784 ~ 22125370 (+) False tgfbr1b
XM_036944065.1 mRNA downstream 7724 22061784 ~ 22125370 (+) False tgfbr1b
XM_036944066.1 mRNA downstream 7724 22061784 ~ 22125370 (+) True tgfbr1b
XM_036944068.1 mRNA downstream 98770 22152830 ~ 22215450 (+) False lancl2
XM_036944069.1 mRNA downstream 98975 22153035 ~ 22215450 (+) False lancl2
TU1449889 other upstream 221134 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 1173989 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 2335282 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 3152876 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 6121223 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 1078799 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1323248 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1352600 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1391778 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 1612411 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile