RNA id: XM_021562716.2


Basic Information

Item Value
RNA id XM_021562716.2
length 2406
RNA type mRNA
GC content 0.53
exon number 9
gene id tgfbr1b
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22061784 ~ 22125370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTCTCAACCATGGACTATCGACAGAAGTTGAGACAGGCAGTCTGGAGTAAATCTGAACCACGATGGATGCAATAACCCGTTGTCTCGTGTTAATAGTCCTGTTCTTTGGGACTAGGATTCAAGAAAATGATGCCTTGCAGTGTTACTGCCAGCGATGTCTCAACTCCACGTGCACCACGGACGGCCTGTGCTTCGTGTCCGTCAGGAAGTCTGGCAGCAGCATCACCGCCGAGAGCAGCATGTGTGTCCCAGAGAACGAGCTAATCCCGCGTGACCGCCCCTTCATCTGCGCACCCTCCACCAAGGACGACACTGGCATCTACCCCATGTGCTGTGCCACCGACTGGTGCAACAAGAACCCCGACCTCAGCGTCTTCCCAGTGCCGACGGTGAAGCCGGTTCCCCTGGGGCCTGTGGCGCTGGCAGCGGTCATCGCGGGGCCTGTGTGCGTACTGTGCTTCGTGCTGATGCTGGTCTTCTACATCTGCCACAGCCGTGCGGGCGCCCACCACCGCGTACCCAACGAGGAGGACCCCTCCATGAACCACCCCTTCCTCAACGTGGGCTCCACCCTCCAAGACCTCATCTACGACATGACCACCTCTGGCTCCGGCTCTGGTCTGCCCCTGCTGGTTCAGAGGACCATAGCCCGGACCATCATCCTCCAGGAGAGCATCGGGAAGGGCCGCTTCGGCGAGGTGTGGCGGGGGAAGTGGCGAGACGAAGAGGTGGCGGTCAAGATCTTCTCGTCCCGCGAGGAGCGCTCGTGGTTCCGCGAGGCTGAGATCTACCAGACAGTCATGCTGCGTCACGAGAACATCCTGGGCTTCATCGCTGCCGACAACAAAGATAATGGGACATGGACCCAGCTGTGGCTGGTATCAGACTACCATGAGCATGGCTCTTTGTTTGACTACCTGAACCGCTACACCGTCACCGTGGAGGGCATGATCAAACTTTCCCTGTCCACTGCCAGCGGCCTGGCCCACCTCCACATGGAGATCGTTGGCACGCAAGGGAAGCCGGCCATCGCCCACAGGGACCTGAAATCTAAGAACATCCTGGTGAAGAAGAGCGGGACATGCTGCATCGCTGACTTGGGCCTGGCCGTGCGCCACGACTCCGCCACTGACACCATCGACATCGCCCCCAACCACAGAGTAGGAACCAAAAGgtataTGGCACCAGAGGTGCTGGACGACTCGATAAACATGAAGCATTTTGAGTCATTTAAGAGGGCAGATATCTACGCCATGGGCTTGGTTTTCTGGGAGATAGCCAGTAGATGCTCTCTAGCAGGCATCGTTGAAGACTACCAGCTGCCATACCATGACCTGGTGCAGTCAGACCCTTCtgtagaggagatgaggagggtggTGTGTGAGCAGAAGCTACGGCCCAACATTCCAAACCGTTGGCAGAGCTGTGAggctCTGCGGGTAATGGCTAAGATCATGAGGGAATGCTGGTATGCCAACGGAGCCGCCCGCCTCACTGCGCTACGCATCAAGAAGACTCTTTCTCAGCTCAGCCAATCAGAGGGCATCAAGATGTAGACTCACTTTCTCTTATTATATTATTCATAatcttattattttattattaccaTCATTAGTTCTCGCTCCGCTGTTCCTCCTCTTGGTTTGAAAGGAGAGACGGCTCGGTGAAGTTTTACTCTGATATCCCCCGACCACTCCCTAAATGCCGGCATCGTTTCCTCGTCGCCCCACCGACCGGCGCGTGGATCTATTTCCTGTATCACGGAGGTGATGGATGGATCTGGTGGAGGGATGTTTGCCAGTGcaaaccccacccccccccccgtcctCAAGATTGGTGGGATCACTTCCTCCAGTGCTCGTGAATTACCTATCAGGGTGATTACAGGCCGACGTAGTCCCACCCTGCCACAGACCCATCTCTCAATGCTGTTCTGCGGAAACCAGAGGAAAGGAACAACGACCCATAAGAAAAACCCTAAGGTTGCACGACTGCTGGTCATAACATTCAGGTGACAATGCCTCCATTCCAACAACGAATGTTCTGCCACTGGGCGAGGTAGCTTGGACTCGACGAGAACCGCCCAAGAAAAAGACTGaacgaactatagtttgtttatttttttaccatcTGGTACTTAAAAACGAGCATATTAATTGAGTTATTATTTGTGTTTCTTTCCATGGAGAGATGCTGGTGTGCTGTTGGACTCATCTCTCTAGAAAATGTTGCATCTTTTTTTTTTAGTatttctttctcttctccctAGGTATCACGGTACAGGGGGTCTACAGGTCAGTTTAACTTATTGGTTTTTGTTTGCAAACAGAATGGACATGAGCTCATTCAGTCTTGGCCAACATGCTATGGCATATGcaatatagataaaatgtatctaTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1450218 lncRNA upstream 137277 21923345 ~ 21924507 (+) True G1269351
TU1450204 lncRNA upstream 155238 21905960 ~ 21906546 (+) True G1269340
TU1450197 lncRNA upstream 158982 21902601 ~ 21902802 (+) True G1269333
TU1450194 lncRNA upstream 161549 21899982 ~ 21900235 (+) True G1269330
TU1449987 lncRNA upstream 176385 21885080 ~ 21885399 (+) True G1269171
TU1450398 lncRNA downstream 1198 22126568 ~ 22130052 (+) True G1269513
TU1450516 lncRNA downstream 27808 22153178 ~ 22153796 (+) True lancl2
TU1450636 lncRNA downstream 190977 22316347 ~ 22350514 (+) True G1269737
TU1451093 lncRNA downstream 458194 22583564 ~ 22583772 (+) True G1270180
TU1451287 lncRNA downstream 697291 22822661 ~ 22823010 (+) True G1270359
XM_036944063.1 mRNA upstream 7724 21996818 ~ 22054060 (+) False LOC110489805
XM_036944064.1 mRNA upstream 7724 22015387 ~ 22054060 (+) True LOC110489805
XM_036944062.1 mRNA upstream 69794 21909632 ~ 21991990 (+) False LOC110489791
XM_036944060.1 mRNA upstream 69794 21909633 ~ 21991990 (+) False LOC110489791
XM_036944061.1 mRNA upstream 69794 21909633 ~ 21991990 (+) True LOC110489791
XM_036944068.1 mRNA downstream 27460 22152830 ~ 22215450 (+) False lancl2
XM_036944069.1 mRNA downstream 27665 22153035 ~ 22215450 (+) False lancl2
XM_036944067.1 mRNA downstream 27926 22153296 ~ 22215450 (+) False lancl2
XM_021562729.2 mRNA downstream 837442 22962812 ~ 23028566 (+) False LOC110489808
XM_021562730.2 mRNA downstream 837442 22962812 ~ 23028566 (+) False LOC110489808
TU1449889 other upstream 267531 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 1220386 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 2381679 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 3199273 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 6167620 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 1007489 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1251938 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1281290 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1320468 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 1541101 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile