RNA id: XM_036944069.1


Basic Information

Item Value
RNA id XM_036944069.1
length 2460
RNA type mRNA
GC content 0.52
exon number 11
gene id lancl2
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22152830 ~ 22215450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgagggaaggGATGGAGGCACACAGGGGTGTTTATAGATTTGTTTATGGTAGTATAATCTGTGTGCGTGCGCCAAATCAGTACACAGCAGAAACACCATCTGTTTCCTCAGAGGCTAGGACTCAAATTTGGTCCAGATCGGCACGAGACAGCTGCTTATTGCAGGACTGGTGGGCTGTCTCCCGTAGCCTCCCATAGCTCGTCAACCAGTAGGATTTCTGAATTTAAAAACCTCTCTCACCGACTACGAAAGCGGGATCCCGAACATGATGATGAGAGAAGATGCGAACTAATATCGTTGAGAGAGCTGCTACGACTGTGGTTCATCTATCCTCCTGCATCGATGAAGCGCTTGCAACGGCTGAAGACAAACGAAATTAATTGCATGGTCATTATTTGATATCAAAAATAGGGAGTCCGTATACATTTTGGCCTTGACGAGTTGCCGTTAAAATGGGAGACAACATGTCCAAAAGATTGAAATTAGTGTCGGCTACGGAAGCGGAGATGGAGGAAAGATCTTTTATCAACCCGTACCCCGACTGGGACCAAGGAGTCTTCACATCTTCCAATTCAGGAATGGACAGTGACTGCAACGAGCCTTTCGGCGAAAATGGAAAGATCAGCGAGGTGTTCCAGAAGAAGGTGCAGAATAAGATCAAGGACCTGCTGCAGCAGATGGAGGAGGGCCTGAAGACGGCCGACCCCCACGACTTCTCCACCTATACGGGCTGGACAGGTATCGCCCTTCTCTACCTGCAGTTGCACCGGGTGACCTGCGAGGCCTCCCACCTCCAGAGGGCACTGGACTATGTGAAGAGGACCCTGAGGATCCTGAATGGTCGCAAGGTCACCTTCCTGTGTGGGGATGCAGGGCCACTGGCCGTGGCTGCTGTGGTGCACCACCGCCTCAAGAACCAGACAGAGAGTCAGGAGTGCCTCACCAAGTTGCTCCAGCTGCAGCGTGGAGTGGTGTCTGCGGACTCTGAGATGCCCGATGAGCTGCTGTACGGACGGGCCGGCTACCTGTACGCCCTGCTCTATGTCAACAAGGAGATAGGACCCGACACTGTGGATGAGACCACCATCGCCAGGGTTGTGACGGCCATCTTGGAGTCGGGGAAGAACATGGCCAAAGAGGAGAAGAAGGCGGAGAAGTGCCCACTGCTCTACGAGTGGCACAAGAAGCAGTACGTTGGCGCTGCCCATGGCCTGGCGGGCATCTACTGTATGCTGATGCAGCCCTCTGCTAAGGTGAACCAGGAAGTCCTATCTGAGTTGGTGCGGCCCAGTGTGGACTACGTCCGCCACAAAAAGTTCCGCTCTGGGAACTACCCTTCGTCGCTAAGCAACGAGACGGACCGGCTGGTGCACTGGTGCCACGGGGCGCCAGGAGTGGTGCACATGCTCATCATGGCACACAAGgtgtTTAAGGATGAGAAGTACCTGAAGGATGCTGTGGAGTGTGGGGAGGTGATCTGGCAGAGAGGCCTGCTGAGGAAAGGTTACGGTATCTGTCACGGCACGGCGGGCAACGCCTACTCCTTCCTCACCCTCTACCAGCTCACCCAGGAGAAGAAGTACCTCTACCGCGCCTGCAAGTTTGCTGAGTGGTGTCTGGACTACGGAACCCACGGCTGCAGAATCCCAGACAGACCGTACTCTCTGTTTGAAGGTATGGCCGGGGCTATCCACTACCTGTCAGATTTGACCCAGCCTGAGTCTTCCTGCTTCCCTGCATTTGAACTTTAACCTTTGGGTCGTAGACGGACTTCGTCCCCCTTCCATTCTGAACATTTGGAAGATTGCGATGAGCAGGGCTCTTGGATGAGGGGGTTTGGGGTGTGATGGACCACTGGCGTCTTGAACCCTCAGCCCAGAACTGCAGCCTGGGGAGGGATGTTGTCCCCTGCTCCGGTTTTTCAGACACATGGACGGAGGAAAAACACCCCAAAGCCCTAGGCCTTTAACTCTGtaaacgctgtgtgtgtgtgttggggttttgTTGTGAATGGGAAGAAAATGCTGTTTTGTTCGTGGATCTTTGCCTCTGCATGCCTATCCAGATCTCCTTCTCTGTATGTGATCTCTAATCCTTGTCCCACACCAGTTTTTAGTGCTACTCCCTCTTCCCTAGAGACTAATTATCTTTGCATGGGGACATCAGAAAACATGTATTAGCCTTGGAATGTGCGTGTCAGTCAAATGTTAATGTCTAACAGTAAAGTAGCGTGGCTTTTTTGTATGTCACTGTGTTTTGTCCCATTTTCCATTTCGTTAATGTGCTGAAGAGAGGATTTTGTTCAATGCCGCTTCGACCTTTTCTCGTGGATATTGTTTCTCTCAGGCGAACAGCGTTACATTATGAATGTTGTACAATAAACCAGGCTTCAATTGCTGACTTACCGAGTGATTACAGTACAATGTCTTAAATAAAATGCATTCTTACCTGCCTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1450398 lncRNA upstream 22983 22126568 ~ 22130052 (+) True G1269513
TU1450218 lncRNA upstream 228528 21923345 ~ 21924507 (+) True G1269351
TU1450204 lncRNA upstream 246489 21905960 ~ 21906546 (+) True G1269340
TU1450197 lncRNA upstream 250233 21902601 ~ 21902802 (+) True G1269333
TU1450194 lncRNA upstream 252800 21899982 ~ 21900235 (+) True G1269330
TU1450636 lncRNA downstream 100897 22316347 ~ 22350514 (+) True G1269737
TU1451093 lncRNA downstream 368114 22583564 ~ 22583772 (+) True G1270180
TU1451287 lncRNA downstream 607211 22822661 ~ 22823010 (+) True G1270359
TU1451313 lncRNA downstream 639317 22854767 ~ 22854996 (+) True G1270385
TU1451314 lncRNA downstream 641785 22857235 ~ 22857716 (+) True G1270386
XM_021562716.2 mRNA upstream 27665 22061784 ~ 22125370 (+) False tgfbr1b
XM_036944065.1 mRNA upstream 27665 22061784 ~ 22125370 (+) False tgfbr1b
XM_036944066.1 mRNA upstream 27665 22061784 ~ 22125370 (+) True tgfbr1b
XM_036944063.1 mRNA upstream 98975 21996818 ~ 22054060 (+) False LOC110489805
XM_021562729.2 mRNA downstream 747362 22962812 ~ 23028566 (+) False LOC110489808
XM_021562730.2 mRNA downstream 747362 22962812 ~ 23028566 (+) False LOC110489808
XM_021562731.2 mRNA downstream 747362 22962812 ~ 23028566 (+) False LOC110489808
XM_036944073.1 mRNA downstream 747362 22962812 ~ 23028566 (+) False LOC110489808
XM_036944074.1 mRNA downstream 747362 22962812 ~ 23028566 (+) False LOC110489808
TU1449889 other upstream 358782 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 1311637 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 2472930 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 3290524 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 6258871 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 917409 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1161858 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1191210 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1230388 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 1451021 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile