RNA id: XM_021562698.2


Basic Information

Item Value
RNA id XM_021562698.2
length 8531
RNA type mRNA
GC content 0.50
exon number 29
gene id LOC110489790
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22367531 ~ 22446695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATCGGATGGGAATATGCTCTACTCATGCGTCGACATCAGCCGGGACGTTTGGGCTTCAATTTCTACGTTTTAAACATGGATTTCTGTGAAATCCCCCGCTCGACTTGATAGTCACGTTTGGGATTTATTGCTCGCAATTGGAGTATGATTCACCGACAAGTTATTTTATCCCAGGATTTGATGTGCTTTGAGTTGACGACACATAATGCTGCTGAACCTGTGTAGTGTTAAGAACTTGTACCAAAACAGGTTCCTGGGCCTGTCCGCCATGGCGTCGCCGTCGCGCAGCGCCCAGAGTCGGCGGCGCTGCAAGGACGCTGGGACGCGTTACAGCTACAGCCCCGAGCAGTACCCCAACGGTGGGCCCCGGCACGACCACGCCACCGCCCTGGCCCTGCAGCCCCGCTCTACTAGCGATGCTGACCTGGTCACCTCGGACAGCCGCTCAACGCTGACCGTCAGCACCTCCCACTACGCCATCAGCCAGTCCCAGGACATGCTCATCTGCTGGGACATCAAGGAGGAGGTGGATGCCGGGGACTGGATCGGCATGTACCTCATAGATGAGGGACTGTCGGAGAACTTTCTGGACTATAAGAACCGGGGAGTGAACGGCTCCCACAAAGGCCAGATAGTGTGGAAGATCGATACCAGCTCCTACTTTGCAGATTCGGAGACTAAGATATGCTTCAAGTATTACCACGGTGTGAGCGGAGCCCTGCGAGCCACCACACCCAGTGTGACAGTGAAGAATGCATCTGCCCCTGTGCTGAAGCCAGTGGTCAGCCAGGAGGTCACACAGAGTCTTGGCAACAGAAGGCtcatcagtttctctctctcagatgtcCAAGCGGTGGGGCTGAAGAAGGGCATGTTCTTCAACCCTGACCCCTACCTGAAGATCGCCATCCAGCCCGGCAAGCACAGCCTCTACCCCGCGCTGCCCCACCACGGCCAGGAGAAACGCTCCCGCATTGTCTGCAACACCATCAACCCTGTTTGGCAGAGAGAGCGCTTCAGCTTTGTGTCTCTGCCTACGGACGTGCTGGAGATCGAGGTGAAGGACAAGTTTGCTAAGAGCCGGCCCATCATCAAACGTTTCCTGGGCAAGCTGTCCATGCCGGTGCAGAGGTTACTGGAGAAACACGCCATCGGgGACCGTGTGGTGAGCTACTCTCTTGGCCGCAGGCTGCCGACGGATCATGTTAGTGGACAGTTGCAGTTCAGATTTGAGATGATGTCCTCAATTCACCCAGATGACGAGGACATCTCCCTCGTCATGGAGTGCCCTGtggtccctgaccctgagcagTTGGAGGTAAACCAGGTAGACCCAGTCGCCCCAGCAGAGATCCCTGTCGAAGACACATTGAGCATGGGGCCCGACACACCCGAACTCCCCCTGGATGGAGCCCCAGACTTGGAGGACCCGGAGCCCTCCACCACTCTCGCTTACGTCTCCCTCACAGAGGAGGCCCATCCTGGGGACGATGtcatggaggaggagggtgtggaggAGCAGGTCACCCTGGTTGAGATGGAGGAGAGTACAGTTAGGGAGGTGCAGGTATCTTCTTCAGAGCCACAGACTGGGATAGAAGAGCAGGTTTCAGCTGAACAattggtggaggagagagaggaggaggagactggagCCCAGGAGGCTCAAGCCCTGTCTGAGGAGGGGGAGGCCCAGGTGCAGCCTAAACCTGAGGGTATGGAGATGGAGTTGGACAGTGAGGAACCTACCACTGCTATGGAGGAGCCGTTGGAAGGAGCCACGGGGCCTGTGCCGGCTgaggaggtagtggaggtagtggaggaggagggacagcAGGTGGTGGTGGAAGCCAAACCGAGGAGGGTTGACTGTTGCTGCCCAGCCCGCGCCTCCCCTCCAATGCGGAGCGCCCTGCGGCGCAAGAACAGGCCCTGCTCGCTGCCCGTCTCGGAGCTGGAGACAGTGATCGCCTCATCGTGTGGCGACCCCGAGACACCACGCACCCACTACATCCGcatccaccacctcctccacagcCTGCCTTCAGCACACCAACGGCAGGGCAgcggggaggaggaagagggggaggaggagggagggtctTCTACCGAGGAGCCGACCATCAAACCCACCTCCAAGGACggggaggaaggggaaggggaggaggaggaggaggaaggagacgcGTCCCAATCCCTGGCGTCCCCCTCCCAGGTGCGTGAGTGCACAGCCCCCTGCTGTCGTAGTAGGACCCTCCCCCGCAGTCTGTCCATCGAGCGCCTGTCAGAACTCAACCAGCTCctggatggaggggagaggggagggaggacgcTGCACCCACGCCTGGAGAACGAAGAGGCGGAAGGGGGCGGAAGCGGTCGGGGAGTGAGGGGGAGCGAGTGTGAGTTGTGCGACAACTCCTGCTACAGCACGTCTTGTTATAGCACCAGTTGTTACAGCACTTCCTGCTACAGCAACTCTGGCTACGAGGGGCGCAACCGCCCCTGCAGCCACACACGGCTGTCGTCGGTGGACAGCACACGCCTCTCAGAGAGCACCGTCTTCTCCTCGCAggacgaagaggaggaagaggaggagaacagcGCCTTTGAGTCGGTGCCTGACTCCATCCAGAGCCCCGACACCAGGGAGCCTGGCGGCGATGGGACGACAGCAGAATGGAGGcaggagacggaggaggggacGAGAGGGGAGAATGGGGAGTCGCCGGTGGCCGGGCCTAGCGATAGGACAGTAGGAGGAGATAGTTACTTGCCATGCGGTCATCCTCCTGCTTTGCGACCTGACACCCACCATTACCCAACTGTTGATGAACCGTTGCCTCCAAactggGAGGCGCGCATCGACAGCCACGGACGTGTCTTCTACGTGGACCATGTGAACCGCACCACCACCTGGCGGAGGCCCACGCACGCCGCCTCCAAGTGTAACGGCATCCAGCGCTCCAGCTCCACCCAGCAGATGGAGCAGCTCAACAGGAGGTACCAGAACATCCAGAGGACCATGGCGACGGAGGATGAGTGTGGTGGACGGAGGTTGGAGAGAAGTGTCAGCACGGAAACGGAAACAGACTCTCCACCACAGGCCATTGAGCCAAGGAGAGAGGGCCCCTCATCCCCTGTCAGCAACCAGAAGATCACCCTGCTCCTCCAGTGCCCCGCCGTTAAGTTCATCACCCACCCTGAGTTCTTCACGGTCCTGCACGCCAACTACGGTGCCTACCGGATATTCACCAACAGTACCTGTCTGAAGCACATGATCCTGAAGGTACGGCGGGACGCCCGCAACTTTGAGCGCTACCAGCACAACAGAGACCTGGTGATTTTCCTCAACAAGTTTGCCGACACACAACTAGAGCTGCCCCGAGGCTGGGAGATCAAAACAGACCCACAGGGCAAGTCGTTTTTCGTGGACCACAACAGCCGGGCGACAACCTTCATTGACCCCAGGATCCCCTTACAGAACGGCCGTCTGCCCAACCATCTGACCCACAGGCAGCACCTGCAGAGACTGCGCAGCTACAGTGCTGGAGAGGCGTCTGATGTGTCCCGGAGTCGAGTAGCTTCCCTGATTCACAGACCTGGGAACAGCCTGGTAGCCGCCATACGTAGCCAGTACAACGCCGACTCCACACCGTTAGGTGCACCATCTTACAATGACAAGATAGTGGCGTTTCTTCGCCAGCCAAACATCTTTGAGATGCTTCAAGAGCGCCAGCCGAGCCTGGCCAGGAACCATGTACTAAGGGAGAAGATCCACTACATCAAGACGGAAGGTTCACAGGGGGTGGAGAAGCTGTCTTGTGATGCTGACCTGGTCATTCTACTGAGCTTGTTTGAGGAGGAAATCATGTCCTATGTTCCACCCCACTCCTTTCACCCGGGGTACAGCTTCTCGCCTCGCTGCTCACCCGGATCCTCGCCACAAAACTCCCCAGGCTTACAGAGGGCCCGAGCTCCGGCTCCATACCGCAGAGACTTTGAAGCCAAACTGCGTAACTTTTACAGGAAGCTGGAAGCTAAGGGCTATGGCCAGGGGCCAGGGAAGATCAAACTGATCATCAGAAGAGACCACCTGTTGGAGGGCACCTTCAACCAGGTGATGGCCTACTCCCGCAAGGAGCTGCAGAGGAACAAGCTCTACATCACCTtcctgggagaggagggGCTGGACTACAGCGGCCCCTCCAGGGAGTTCTTCTTCCTGTTGTCCCAAGAGCTATTCAACCCTTACTACGGCCTGTTTGAGTACTCAGCCAACGACACTTACACCGTCCAGATCAGCCCCATGTCTGCCTTCGTTGAGAACCATCTGGAATGGTTCCGCTTCAGTGGGCGTATTCTAGGCCTGGCCCTGATCCACCAGTATCTGCTGGATGCCTTCTTCACACGACCCTTCTACAAGGCCCTCCTCAGACTATCCACAGACCTGAGTGATCTGGAGTATCTGGATGAGGAGTTCCATCAGAGTCTCCAGTGGATGAAGGAAAATGACATCACTGACATCCTGGACCTCACCTTCACTGTCAATGAGGAGGTCTTTGGCCAGGTGACGGAGCGGGAGCTAAAGTCGGGTGGCTCCAACCTTCAGGTGACGGAGAAGAACAAGAAGGAGTACATTGAGCGCATGGCCAAGTGGAGGGTAGAGCGCGGGGTGGTGCAGCAGACTGAGGCCCTGGTCCGAGGCTTCTATGAGGTGGTAGACTCTCGTCTGGTGTCGGTGTTTGATGCCAGAGAGCTGGAGCTGGTCATTGCAGGGACGGCTGAGATCGACCTAAACGACTGGAGGACCAACACAGAGTACAGAGGAGGTTACCATGACGGCCACATAGTGATGCGGTGGTTCTGGGGCGCGGTGGAACGCTTCAACAACGAGCAGAGACTGCGGCTGCTGCAGTTTGTGACGGGCACCTCCAGCGTTCCATACGAAGGCTTCGCTGCCCTACGGGGAAGCAACGGCCTACGACGCTTCTGCATCGAGAAGTGGGGCAAGGTCACCTCACTACCCAGggCTCACACGTGCTTCAACCGCCTGGACCTTCCACCTTACCCCTCCTACACCATGCTGTATGAGAAACTGCTGATTGCTGTGGAGGAGACCAGTACCTTTGGCCTGGAGTGAGactaaccactgaccactgactgaCTTCCTTTGGCACCCTACTAACAAACTTGTTTTATTTTTACGTAAAAATATTAACTCTGGACAAATGGCATCCTCAGTTGTTGTTTTCTTACAATACGTACCTGAGGAGTGGGTTTGAAAAAGAGGGATCAAACGTATTAAAACTTGCATGCACTGCATCACTCATCTGAGACATTGTACATAAACCAACATGTATGCAACAGTGAAGACCCTGGCTCCAGCCCGTTCTACGACCCCCCCACTTTGTCCATTTCATGGTCTCATCAGTTTAATCTTCCCCATAAGACTATTCCAGCTCCAAAGACTGAGGCTGACACTATGCAGGGGAGGGGCTTGCTCCACCGGCTGCCACCCACAGCCCGCCACCTCTGGCATCAGAGGGAGTGACATCGGCGGTGACCCCCTAAAAATTGTAAGtctctccagaccttaatctTGTCCTATCAATCATCGCAGAGCATTTCCTGAAATCACCTTGACTCCCGACGACCATTCAGTGACAAgaccaaaacattttttatttccatTGTTACATTTAATAAGCATGTTTCATGCATGTTTCACCAATTGCTTTATCATCATAAGGGCATCACTGTTTTCCTCAGAGTGGATGAACAGGTGCTTTTTTAGGAATTCCTTCACTGTTCTGAGTCCATGCCCAGCCTGGGTGTACTTACTGCACACAGTTGTctgaatctcccgcccaagaaaGATACTGTACTATGCCTCCATGAGTTATTGCCTCAGTGACACCAGCTATGTGTTAATGAATTACACATACTATTGGAGACGCCAATGCAGTGGTGCAATGGTTTTTGCCGCATCATGGCAGTAGGAGGCTTATTAGAGTCACAGTTCCTGTACAGTGAGAGGAACTGTAGAGACCCAGGTGATGATGTAACTTGTACAAGGCTAAGATTAGAATGTGAAAGGCTAAGCTCAGAGTTCTCTTGTCAGCCTTGCAGTGTCATTGAGCTCACACCATAAATAATACCCTTGTCATTCGGAACATGGGCTTTGTAATTTAAGCCCAAACGCTGACTGGGAGATCTCAACCATAGAGGCAAATTCTGTACTGTGAGGCACTGTGCAACTTTGATGGAGTGTAACATCATGTTGAACATCCCTTtctgtcctggtctagtgttgACAATTATTCTTGGGGTATCGTCCTTTGTTTTTAACATTTTCATTGAAAGGATGTACACTAAATGGCAGTTTCTAGAACACAGATTAGGCATAGTCCTATaccagtggtattcaaagtcggAGGGAATTGCAGTTGTGTTTTTTTGGGGAGAAAGAAAATGAGGATTgtatattgtcccatacaataacaTGTAAACGTTTTTTTGAGAAACATAATtagaaaaatctaattttattaagTCAATTTATTATTTtgataaaatattaaaatataatCAATTGAAGGTTATTTGTTTATGTAAATATCGAAATTGACAGATTTTCAGGTTGCGTCATTAGATTTAGGGTGGGGGGGAGTCGCCAGAAATTCTGACGAAAGAAAAAAGGGGTCCCCGCTGAAAAAGACTAAAAAGCTATTTCAATGAAGATTCTCAATTGACTGTGCTTTTTAGTCCTGAACCAGTATTAATCGGTTTCAGGAAAACCAGCCCTAAATGGCCCCTAGTTATACTGTAAAATACTGTAGATTGTCCATGATTGAAGCTACAGCTGGTGTACTATGATCATAGTATAATATTTGTATGGAAAGAACCAGGGCTACTACAAAAACTAAAAAATGTTCAGGGAGCATAGAAGATTCTGGTTAGTTTTGTTTCATaagtactgttgtttttttttctatCATGTTTTTTTGATTATTTTTTTGTCAAAGCGGGTGATGTAATATTTTGGTTTCTCTTTAGGACCATAAGGTGGAAAACTAATTTGAATGTTTTGTTTGGTAAACATTGTCCAGTATTGTTTAGGTGTTTTTATAATGATGGCATAGGAATTGAAATGCTTTCAAAAACAGGACTTTTATGTGCCGCCCCCCATGTGTACATAGTTTTTTGTTACTTATGCCTTCATTTAGTacctttttttatatttttcatgATTTTGAATTGTATTTCAAAATGGCTTTGTTCATTTTGAATTTGTGGGGAAATGTTGGTGTTGTCTTCCTTCCCTTTGCACTGTAAATGTAACCTTGACCACTTTCTCTTCCTCGTTCTATTTCGTCACTATCTGGCCAAGTTGCAAAGTCAGGAGCCCTGTCTCTATTCTCTGTTCtattcttaaaatctgattttaaacctaaccgtGACTCTAACCTtatccacactgctaaccttatgcctaaccctaaccttaaaaatgttTTGTTTCATACATTTTTATGAAATAGACAATTTTGCAGTTTGGCCATCTAGTGGGAACCCAATCTATCCATCTTCTATGTTGGTATTGACTGGTGaaaattgttgttgtttattcaagTTGTTGACGTAGGAATTGCATCCTTAATGGTCGAAGACACAGAGAATGTCTGCATACCAAATGGtacccttttccctatgtagtgcactacttttgactaggccctgtcaaaagtagtgcactatataggggttgggcagccatttgggacatacaaaTGTGTCATGTAGAGAATAAGTCATTTTGTTTGAATTGTCTAGcattgtattttttaaaaatatgtaATTCAGTAGTCTATTTTTACTGGCTTTATGAAGAATTTTATCCATAGAATATCCTGGTCATCACTTGGTATGATCGATCCTATAATATGAGAATATTTATTAAATTAATATTGCTCTTAAATTATTCAATATTACCCTTAAATTATTCTAAATGATCTATGTACGTTGTTTAAGTGCATTAACTATTCAAATATTTAAGATCAGAGCTTGATCAGAGcattcaaataaataatgcaCCGATAATTCAATCTAACTGTACTACAGTTTGAGTACCTTATTTTTGTGATTTTTTACAAATCTAATCTTTTTATTTGCCTATTTATTTTTCATGTTATATCCCCTTGGGAACAGCAAGGTAACAGTAGATCTTCCAATCATCAGTCAAAACCTGGCAGAGAGGTTGTGATATTGATTAGCATTAGCATCTATACCTTGTTGATATGACTTGATAAAAGGCTCCCTCTTATGGAAATTGGTACTTTGTCCTCTCCTTTTTAACTTTCCTTGTCCTGTAGGACTTTGTCTTTCAGAATTGTGACATTTTGAAAGACATGTTTCATGATCAAATTTGGTTTGATGACAGGTCACTAAATTCTCAGGCTGTGCTTTCGCTCCATGTACTCATATCACTGTACACGAATGTCAATAAACAATCACTTTGTAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1450832 lncRNA downstream 88718 22231519 ~ 22278813 (-) True G1269923
TU1450778 lncRNA downstream 185852 22154239 ~ 22181679 (-) True G1269870
TU1450776 lncRNA downstream 213645 22153173 ~ 22153886 (-) True G1269869
TU1450513 lncRNA downstream 215861 22151439 ~ 22151670 (-) True G1269623
TU1450493 lncRNA downstream 235308 22131977 ~ 22132223 (-) True G1269603
TU1450992 lncRNA upstream 59259 22505954 ~ 22507435 (-) True G1270080
TU1451006 lncRNA upstream 85401 22532096 ~ 22532307 (-) True G1270094
TU1451017 lncRNA upstream 91282 22537977 ~ 22538213 (-) True G1270105
TU1451031 lncRNA upstream 98570 22545265 ~ 22545471 (-) True G1270119
TU1451051 lncRNA upstream 104299 22550994 ~ 22551232 (-) True G1270139
XM_021562723.2 mRNA downstream 8025 22312796 ~ 22359506 (-) True LOC110489802
XM_021562722.2 mRNA downstream 8032 22312796 ~ 22359499 (-) False LOC110489802
XM_036944071.1 mRNA downstream 56260 22218249 ~ 22311271 (-) True LOC110489804
XM_021562725.2 mRNA downstream 69688 22215471 ~ 22297843 (-) False LOC110489804
XM_036944058.1 mRNA downstream 503418 21853700 ~ 21864113 (-) False LOC110489796
XM_021562728.2 mRNA upstream 197646 22644341 ~ 22676386 (-) True LOC110489807
XR_005036304.1 mRNA upstream 348869 22795564 ~ 22796979 (-) True LOC118938910
XM_036945575.1 mRNA upstream 451417 22898112 ~ 22899241 (-) True LOC110490829
XM_021562733.2 mRNA upstream 461221 22907916 ~ 22955764 (-) False si:dkey-225n22.4
XM_021562735.2 mRNA upstream 461221 22907916 ~ 22955764 (-) True si:dkey-225n22.4
TU1450121 other downstream 564179 21802687 ~ 21803352 (-) True G1269265
TU1449275 other downstream 1407442 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 2076858 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 2099043 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 2913761 19435018 ~ 19453770 (-) True G1266708
TU1452449 other upstream 1266660 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 1266660 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 1266660 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 1266660 23713355 ~ 23728939 (-) True G1271421
TU1455797 other upstream 3599553 26046248 ~ 26048524 (-) False G1274532

Expression Profile