RNA id: XR_005036304.1


Basic Information

Item Value
RNA id XR_005036304.1
length 1164
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118938910
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22795564 ~ 22796979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagtagttggacaactgggagaggagtagctggaccaggcagagtagttggaccaggacaagggagaaggagaggtagggggagaggagtaAGAATGTGTGTTGGTGTTCAAAGGAGAGTAAGAGCTGTTGTCACTGATGACATAAGAGCCACCATCATAGACCATGTGATaaaccatggtctatcactgagagaggctggtgaaagagtccaTCCTAATCTCAGACAGTCAATCGTGGCTTCCATTGTCCAGAATTTTCAACAAACCAACAGGACGTCATCCACCCCTCTGGGGGAAGAGGAAAGCTCCTCAGTGAAGACCTAGAGCATGCCATTGTAGGATTGGTCATTGCTGACAATGCAATAACACAGAGAAATTCAGAGCAGAATTGTAGAGGACAACCTGGTATTTCACAATGTGGAAAGCATCAGCCTGACTACCAATGCTCTGACCAAACACAGAGTTTGAATGAAACAGTTGCACACAGCTCCTTTTGAAAGGAACAGTGAGCGGGTCAAGGAGCTCCGGCACCAATACGTCCAGAATGTCATGGAGTTGGAGGCTAATCAGACCCCACATGAAATCATTAAGTAGACGAGTCAGGGTTTAACCTGGCAAAAACACATCGGCGTGGAAGAAACGTCATCGGGAAAAAGGCCACTGTAGATGTGCCGGGTCAGAGAGGAGCAAATATCACAATGTGTGCTGCAATCTGGAGTGCTGGTTTGGTCCTGCAGAAATGCCAGATTGGTCCCTACAACACTGAGCTCCCTCCTGGATGCCATGGATGCCGGCTGCAGAGACATCTcagctgaagactgccaggggtgGATAAGGCAGGCCAAGCGTTTCTATCCAAGGTGCAGAGACATCTcagctgaagactgccaggggtgGATGAGGCAGGCCAAGCGTTTCTATCCAAGGTGCAAAGCGAGAGACGACATAGGATGTGATGTGGACGAGAACATGTGGTCAAATGCTGAAGATCGTATAGATTAGAACAGGACTGGGCATTTTTGTGTTTTTTCCCTTCTGTGTCTTTTTTACTGTAATTGTGTTTTATTGTTACACATTAGGTAAAAACGGCCATGTATGTTGGTTTTTTTGTTGATCACTGGCAGCAATTTCATGTTACTAATAAAGATTTTACTGCAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451097 lncRNA downstream 209977 22585343 ~ 22585587 (-) True G1270184
TU1451094 lncRNA downstream 211729 22583528 ~ 22583835 (-) True G1270181
TU1451051 lncRNA downstream 244332 22550994 ~ 22551232 (-) True G1270139
TU1451031 lncRNA downstream 250093 22545265 ~ 22545471 (-) True G1270119
TU1451017 lncRNA downstream 257351 22537977 ~ 22538213 (-) True G1270105
TU1452053 lncRNA upstream 4336 22801315 ~ 22805575 (-) True G1271047
TU1452081 lncRNA upstream 36226 22833205 ~ 22834370 (-) True G1271074
TU1452089 lncRNA upstream 43507 22840486 ~ 22840912 (-) True G1271082
TU1452092 lncRNA upstream 46619 22843598 ~ 22843829 (-) True G1271085
TU1452213 lncRNA upstream 226326 23023305 ~ 23026796 (-) True G1271201
XM_021562728.2 mRNA downstream 119178 22644341 ~ 22676386 (-) True LOC110489807
XM_021562698.2 mRNA downstream 348869 22367531 ~ 22446695 (-) False LOC110489790
XM_021562699.2 mRNA downstream 348869 22367531 ~ 22446695 (-) False LOC110489790
XM_021562723.2 mRNA downstream 436058 22312796 ~ 22359506 (-) True LOC110489802
XM_021562722.2 mRNA downstream 436065 22312796 ~ 22359499 (-) False LOC110489802
XM_036945575.1 mRNA upstream 101133 22898112 ~ 22899241 (-) True LOC110490829
XM_021562733.2 mRNA upstream 110937 22907916 ~ 22955764 (-) False si:dkey-225n22.4
XM_021562735.2 mRNA upstream 110937 22907916 ~ 22955764 (-) True si:dkey-225n22.4
XM_021562737.2 mRNA upstream 263705 23060684 ~ 23122826 (-) False LOC110489811
XR_005036061.1 mRNA upstream 263705 23060684 ~ 23122826 (-) True LOC110489811
TU1450121 other downstream 992212 21802687 ~ 21803352 (-) True G1269265
TU1449275 other downstream 1835475 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 2504891 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 2527076 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 3341794 19435018 ~ 19453770 (-) True G1266708
TU1452449 other upstream 916376 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 916376 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 916376 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 916376 23713355 ~ 23728939 (-) True G1271421
TU1455797 other upstream 3249269 26046248 ~ 26048524 (-) False G1274532

Expression Profile