RNA id: XM_021562731.2


Basic Information

Item Value
RNA id XM_021562731.2
length 6712
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110489808
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22962812 ~ 23028566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGATTGACATGTCACCAGAGTGCGATCTACAGTGGAGAAAACTACAGCTTGTCGCCGAGTCACTGTGATTATTACAAAACACAGAAAATGTTATTTGCATCCGTTGATTCTGCTTTAAAAAACGTTTAGACGATCAAAGGATGAATATTTACCGGTAATTTACGCCTTGAAGCCTTTCTAGTCGAGCTGATAATGCTTAAAATGAAGCTGCCCATGAGAACGGCGGAGGCAGGAGGAGACGACACGGCCGAGGAACAGCCCGATCTCCATATTCCAAGATCGGTCTCCGACAAGCCCGAAGGTTCCTCCAGACACCCAGGATATCCATCTCAATTGGATAAAGAGACCGTTTTCGAATGGTTTGGTTTGCATTTAAATCCTGCCAAGCGGATCGAGTTTATGTGCGGACTGCTGCATATGTGCCAGCCACTTGAGCTCCGGTTTCTGGGCTCCTGTCTGGAAGACCTGGCTCGGAAAGATAACCACGTTCTACGGGATGTCGAGATAAGGGCCAACAATCCGAATGATCTGGCCATTTTATCAGATGTTATCGACCCTGTCGTGCGCTCCAAACTGCTGGTCTGCTTGTCTCTTCTGGGATCTGACAGCAGGGAGTGTGCGGGAATACTATTTAGGATATTGAGCCATGTGGATCCCTCCTTGTTATTCAAAAACTATGGCTATTCTGTTTCGCCCTTCAAGGACTCTCAACATCACCAGTTCTATTCTCCGTGTGTGGACGGGAAAGCGTTcgggagaacagaacagaattgCGGGCTTCCAATGGAGGCAGTGATCGGACCCTTGGAACAGTTGGCGCTGCTTTTTACTATGGCCTCCTTGCATCCAGCGTTCCCGTTTCATCAAAGAGAAAAAGTTCTAGAACAGCTGGACAAAATTCAACTTGCTATAGAGGACGAGAGACAGCAGAATCAGCGCAGAATAAACGCCCAGCACAACAAGACCCAGAAAGCAGAGGAGCATGGCCCAGCAGCAGTCACCATCGAGGCCAGTCTGGGTGAGAGGACGCAGGCACAGGGACAGGCTCGCCACGCCAGCCAGACACCCCCCAGCAGAAGGGCCCAAAGGGAAGCCGTGCATGTAGAGAAGATCGTGTTGAAGGGGATCTTACggaggaggacagacagggaaTACAATTTTGTGGTAACGTGGTCCGACTCCTCATCCAGCAATGTCACCAAAACACATCTTGAACTGGAAAGCTTCTTGCTGAAGCTTCCGAAGGAGCAGTCCACCGAGTCGTTTGAAAAGGGCATCCTCCGGCTACTCAACCAGGAAGACCAGTACGAGATCAGGGAAGTGGAGGGGAACCTCAAGGAGAAGTTTCTGTCGGCTCCACAAGCTTTCCGACAGACAAGCAAGGTCTGTGGCTTCTTCCTGTGTGAGTCCTCCTCCTCCAGCCCCAGCTGCGGCAGatTTAACCCTGTGGCCCTAGGGAAGCCATACAAAGAGGACTGCTCAGAGGCTTCCAGCCAGgaggaaggtgtgtATTTGGAGCCGTACGTTCAGGGGCACCGGAAGAAACATGGCAGCAAGAGCCCCAGCCTTAACATTCCCAATGCCAAAAGTTCCCAGGGGGAGAGCAGTCGGGGGGGGCCCCACGGCTCGGAGCACAACGGCCTGCCAGACTGGAGGAGGAAGAGCTGTACGCTCAAACCCAACCAAGACACCTCTGGGGGGCTGGGCCCAGAGCAGAATCAGGACAGTGAGAAGAGGAGCAGCTACCCTGCCACCAAGAGCAAGCCACGAGCACTGGGACCAGACAGggaAAAGGGGAAGAAAGGAGAAGGAAGAGCGGCCTACTTGACGAACGGGAGCATAGTGCCTCTGGCTTCTCAGCGAACGCGACAATCGTCAGGGAAAGACGGTCATCTAGTCGGAGGCTCCAGTCAGGACGTGTACGGAGACACTTCGTCTGAGAGCTACAGCTCCCCCTCCAGCCCCCAGCACGATGGACCAGAGAGCCTGGACAGCGAGGACGAGAAGGACAAAGaTACAGATAGTCACTCAGACAACTCCAGCAGCCAGGGTAGAGCGGACACCTTCTTCCCCTGCCACGAGGTTGCAGGGGGGGGCTTGCCCACCATCCACCCCCTGGCCTCTGCCAAGCCTGCTGGGGAGCCCCTCTGCCCCGAGACCATCCCCAACTTTCCCCCCATCACCTTTATGCAACCCCTGCCCTACATACTGCCCAACGGAGCACTGCCCGCCGATGCCTCTCTGCCAGTCCTGCCTCCTCCTCAGGTGGCAGCGGCCCTGGTAGACAACAAGGTTGTGGGAGGACTGATCATGCAGGTGCCCTTGGTCCTCCGAGAGCCCATGCCCACCCCAGTGCCAGTTCCTGTGCCAGGGGACACAGAAAAGAGGGATGCCCTTGCTGCAGTGCCCGTGCTGCTTCCAGGGTTTAGCTCCCCCACCCTGGGCTTACACCCCCCTGGCAGCCCTGCCCTGCAGCCCCTGATCCAGCGCTTCAAAACGGCCCCTCATAAGGCAACTGTCACTTCCGAGGGTGTCACGGCCTCCTCTGCCCACCACCCCCCGGTTGGAGCCATCAGCGTCATCGCCCCCGGCCCACCCTACGCCTCACCCCTGCAGCCAGCTTACCCCGACCCTGCCGCCAACCCCCTAACACCCTCTGTACCCAGCCCCCTAACCCCCTCTGTACCCCTAGGGGAGCCTAGCATCCCTCACGCCAAGCACCCGGGCATGGCTCTTCCCTCAGGCTTGCCTTCTCCATACATCATGCCCCCCATCCCCACCTCCATCATGGCAACGCTGGGGGCAGGAGTAGCCGGAATAGGGGTAGTGCCCACAGCTGGACAGGTTCAAGCGGTGGTGCCCCCATCTGTGCCCACCCACAACCCCGGTCctgtgcccagccccagccctgccCTCACCCACAGCACGGCACAGAGCGACTCCACCTCCTACATCaacagcaccagctgtgccagtAACCTCGTCGCCCAGCAACAAGTgcaaccaccacaacaacaacaacagcagcagcagcaggcgaCTCCCCAGCAACAGCCCATGTGCTGCGGGGCGTGCGGTTGCCGGGGAGGCTGCGGCACCAGCAACAACAGCCACACAGCGCCTTCATTCTTCTTCCCCCACCAGATGCCGCCGCGGCAGGTGTTCGGTGTGCCACCCATCTTCCAGCTGACGTCCCTGTGCAACAGCAGCTACCTCAGTCAGCCTCCCCTCCAGAGCAACGGCCAGGCCCAGCTACCCTTCTTTCCATCCGCCCCGGCCCCCTACGCCAGCCAGACCCTGCTGCACACACACCCCCACTCCCACTCTGACCACCTACTGGGCACACAGCAAGGCTACAGCCTCCAGCAGATGGCACCCTACAACCGCTTCTACCCGCACATGTACCCCTCCAGTGTGGGCATGGTGCCCGGGGCGGGAGGCGGAGGTGCACTGGGGGTAGCAGTCGGCGTCAACAAGAAGAACGCCAACGTCTCGTGCTACAACTGTGGGGTCAGTGGCCACTACGCACAGGACTGCATACAGCCCTCCATTGACTCGACACAGCAAGGTGGCTTTCGGCTGAAGTACGCCGCCTCCCACTCTTCCGAAGCACTAGACAATGCCGACTGAAGAAGTCTTCTCGTTCCGCCATCTTGTTTGTCACGAGCGGTCAAAGAGACCCCTCCATTTCAAGAGAGCACCACTCGATGTTTCCCTGtcattaaccaggtttccatccaactttTTTAggcgagtaaagtacatgtcggataaaaagttaatgacaggcctgatggaaacagaaaatgtgtcggtaaactttccaaatgttgacaaaacaaaatacgctagacaaggtgggatctttttgtgtcggtaaaatgcgATGGTAACgcttttatgtgcaaatattgatataataaccatcatattgaagtaaacttggagtcacgctaTGATatggtgtggtcctcccactatgactcggggaaacaatgcagtttattaggctacagatgaattCATTTATattgaacttcacagggtggtgaaagtgcacggtgatcttGATGCACCTTTCCAATAAATGTCAAGGGTCAGATTCTGGTGACAGGAATATCGATGTTTGACTGCCGTTTAACAAATAAAAAGATTCtggctcttatccataataatctcttcatgtagactagcctacccgcactgtatctgcgagctgttggctagagcacacgtgCCAAGACCGGAGTAGTCACATTTtctatttaacgcaacagtttgtgacaaaactatcagtagagttgaaaacgatggaaacacattgaactttagatttatatttggtacatgaaaacttaagtgAAAAAGTGTACTGCGTCATCATGCACTGATGTGGGAAAAAGTGCATATTTTCTTTATGCAGATTTTTGGAATATTCGCTTGAATATATGTCGACAATTTGATTGAAAATTTAGCTATTCTCATTTTTAGTTTGACCTTTTTTAACGAGCGTGTGCGAAGAGGGTCCTAAGTACTTGTGCCTGAGACATCACCAACATCCCCATCACAGCTGAGGGTGAAGCTGTCTCGTTTCCAGAGACGcataccccccacccccaccccccccttcaCCAATCCCCCAGTGGCTTTTGGTATTTTGCACTGAAGACTGGCACAAGACAGCAGCTCATGTTTACTAACTTATTTCTTATATTAttagaaaactttttttttaaagacaccaTGTGTACGGGGAGCTTCGTAAAATTATTTTGTTCTCAGAATACATGGGGATCTCGATTAGAGTTTCATATACTTTGTCTTTTATAACGGTATATTTATACCTCATTGTTATTCGACTAGGATTTTTATTGTTTAACTGTACAGCTACAAAAGATGAATGCAAACCAACAaaaaagtaaatgtaaaaaaaaaaaaaaagattatttTTCTCTTTCGCTGCAGTGTTTTTGAATGTACATGTTTAATTTCTTAATGTTAAGGAATCTGGCAGTATCGGGGGGGAAATTCTTAAAGCATTTGCCTCTTGATATAATGTGAAACGCATATTAAGACGTTCTTAATCATCATGTCTGTCATGTAGAAGTTAAATGctgctgtgtttttatttttggtAACATGCACTATAGCTACCAGGAATTCTGAAGTCTCTCAAGTGCACTGAAACAGTCCTAAATCGAACCTAGAGACAGATGTTATTGCAGCAGTGAAGCTCTATACCTTGCTACACTGCTGTCCCTCCATCCAGTATTCTCTTGGAAATGTTGCACTGCAGAGTCGAGCCACAGGGTGGTGCCATGTGAAGCATCAGTGGTTAGGAGGGATAATACTATCATTGATAACTCTGAAAATAACTTTTTTTCTTTAGCCATTTCTACAAGACTGGTGGCAAAGGCAGATGTCATGTAGCCTACCTAGACAGTCAATATGTTTATTCTTCCTTCAATGCAGCAGTGAGATCTAACTGTAAGGCATCTTGTTTGTACATTGGTAAATGTACTCAAATCGATGCACATACACACTATAAATTGATGTTTTCATGTGGAGTATGAAAATGAAAAGTGTGAACACTAAAGGAAGTGTCTGACTGGAGTTTATTGGATATCAGGATTGGTAGCCTTCCAGGGGTTGACATTAAGGGTTGCCATATTGCCTGGGGAAAGTGAACTGATCATTCAAGCTACTTGAGCCTGCTGAGGTTGCCCCATGGGGCtggttatttttgtttgtttgtgtgcgtgtgtgtgtgtgcgagagaaaaCAACCAAACAGCAAAGAATTCCAGTAGCCAAAAGCTGATCTTTTCATTTCCTCCCCATTGTCTGTTTTTCACTTATTAAACAATGTATTTTGTAACTGATGTACGAAATAGAATAATTATTCCAAAATAGAAAGAATTCAATCAATCTTTCTGATTCCTATGTATAGGTGAAAGGCAGGTAATATGTGGCACTTACTTACTGCCTGTAAATATATCATTTACATTTTTGGGCAAGTGATCATAATGTTTGGGCAACCAAAAAAATACTCCTGACTTGCCCGATGGGCAAGTGCGTTTCATGCCTCAATGTCAATCCCTGGCCTTCTCAGACAGCATATCCCTTGAGATAATTGTCAATCATTTAGAGCTCTTTCGTGTCTGTTTAAGCTTTGTGGTCTACACATTAAAATTACATATAGGGATATTACAGTACACACTTGTTTGTTTATATGAGAAGTTATGTCAATTTTTATGAATAGTCACACTTAGTACAGTTTGTCTCCAAACATTTTGTGAAAGCTTTCCACCAACTGGTGAAGTACTCTAAATCTCTTCTGCTTGATTTGATGTAAGCAGAAATTTCTTACAATTACTTAAAATATTGAGGCAAACTTGGACATGAACACAGGAAAGAAAATGTGTGGACCACTTTACATTAATCGGCTGGATGATTTGAAGAACCATGTGAGCTCGGAGGACAATTGTATATATGAACCTGCCAGTTGTACATGTTGAACATATATGGTTAAAAATGCTGTACTGTAGAGGGTACACTCACTGTTACCTTAAGGTGTATGTTTACTGTATTCTTTGATATCTACATTTTAGTGTACTGGAAAGGTCAAATATATTTCTAGAACGAATTTGGATTTTATGCAAATTGTTATGTTTTCCTGGAAATAACAGCAATAAATACAAAATGCCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451346 lncRNA upstream 59242 22903282 ~ 22903570 (+) True G1270416
TU1451344 lncRNA upstream 61926 22900505 ~ 22900886 (+) True G1270414
TU1451318 lncRNA upstream 100960 22861587 ~ 22861852 (+) True G1270390
TU1451317 lncRNA upstream 101541 22860947 ~ 22861271 (+) True G1270389
TU1451314 lncRNA upstream 105096 22857235 ~ 22857716 (+) True G1270386
TU1451435 lncRNA downstream 21198 23049764 ~ 23049975 (+) True G1270489
TU1451487 lncRNA downstream 94388 23122954 ~ 23124405 (+) False G1270541
TU1451488 lncRNA downstream 94388 23122954 ~ 23127564 (+) True G1270541
TU1451562 lncRNA downstream 159137 23187703 ~ 23187954 (+) True G1270595
TU1451529 lncRNA downstream 183555 23212121 ~ 23218465 (+) True G1270565
XM_036944068.1 mRNA upstream 747362 22152830 ~ 22215450 (+) False lancl2
XM_036944069.1 mRNA upstream 747362 22153035 ~ 22215450 (+) False lancl2
XM_036944067.1 mRNA upstream 747362 22153296 ~ 22215450 (+) False lancl2
XM_036944065.1 mRNA upstream 837442 22061784 ~ 22125370 (+) False tgfbr1b
XM_021562188.2 mRNA downstream 377 23028943 ~ 23036510 (+) False LOC100136251
NM_001124515.1 mRNA downstream 496 23029062 ~ 23036510 (+) True LOC100136251
XM_021562736.2 mRNA downstream 9614 23038180 ~ 23044436 (+) True pigm
XM_036944075.1 mRNA downstream 104262 23132828 ~ 23146739 (+) False LOC110489812
XM_036944076.1 mRNA downstream 129391 23157957 ~ 23160651 (+) False LOC110489816
TU1449889 other upstream 1168559 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 2121414 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 3282707 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 4100301 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 7068648 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 104293 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 348742 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 378094 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 417272 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 637905 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile