RNA id: XM_021562739.2


Basic Information

Item Value
RNA id XM_021562739.2
length 7196
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110489813
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23146869 ~ 23156952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAGCACCTTCTATCTGAGCTGAGTTTACACTTGAAGTTAAGAAACAAGTGCATGCATTTCAGTGTCCAGCTGGTGTGACAGACAGCCAGGatgaggatggaggaggaagagggagccATTGCAGTGGTTGGCATTGGATGCAGCTTCCCTGGAGGTGAGGGGCTTGACaatttctggaaggttcttctgGAAGGAAAGAACTGTGCATTGCCAATCCCTAACGAGAGGTTTAACAGTACTTACTGGTATGATGCTGACAACAGCAAACCTGGAAAGTCTCACACTAGCAAAGCTGCTCTCATAGACGGCTTTAACGAACTAGACCTGAGGTTTTTTGGTGTCACCGATGCTGAGGCCGACTACATGGACCCCCAGCAGAAACTCTTGCTGCATTGCACCTATAGGGCACTAGAGAATGCTGGGATGCCAATGGAGAAAGCTAGCGGAACTAGAACTGGAGTATACCTagGACTAATGAACAGAGACTACGATCTCACAACTGCTCAGTACAATCCAGGCTTGACTAACCATTGGAGTGGCACTGGTAAAGCCATGAGTATTGCAGCCAACCGGATATCCTACACCTTCAACCTCACTGGTCCATCAGTTGCCATAGACAGCGCCTGCTCATCATCTCTTGTGGCTCTGCACTTTGCTTGTCAAGCCATAAAACAAGGTGACTGTGAAATGGCTCTCTGTGGCGGTGTCAGCTGTATCATAGAGCCACAAGTCTTTGTCGCTCTCAGCAAGGCAAAGATGATTTCCCCTGAAGGCACCAGCAAACCTTTCTCCAGCAGAGCAGATGGCTATGGCAGAGGAGAGGGCTGTGGGATTATTCTGCTGAAGCCACTGAAACAAGCCTTGAAAGACTGTGACCATGTATGGGGCATCATAAGCAAAACTGCAGTAAACCAAGATGGCCACACTGTCTCTCCAATCACCAAGCCATCCATGGTCCAGCAAGAGGAGCTTCTCCGCAGAATCTATTCACAGTCTGACCTGTCAACTGTCCAGTACATAGAGGCTCATGGGACTGGAACTCCAGTGGGGGATCCCATAGAAGCAGGCAGCATCTCCAAAGTCATTGCCAAAGCCAGACCCCCAGGTTCAGAAACACTCCGCATCGGCTCTGTGAAAGGCAACATTGGACACACAGAATCTGCAGCTGGAGTGGCAGGTCTAATCAAGGTACTCCTAATGATGAAGCATGAAATCATTGTCCCTTCACTGTTCTACTCTGAGGACAGTGCCAGTATAGACGCTAAAGCCTTAAACATAAAAGTTCCCACTAAAGCAGAAAAGTGGGGAAATGCAGGCTCGGTCGAACGGATTGCAGGGATCAATAATTTTGGTTTTGGAGGCACAAATGCCCACACAATTGTCAAACAGTACAACAACTCTCACACCCAAACAGCCGGGGTTGATAGGTCTTATGAGTATTTTATCCTCTCAGCAGCCTCAGAAAAATCCCTTACCATGATGGTACAGGACACAGCTGAACAGATAAGTGGAGACAAAACAGTGGAACTCCAGGGTCTGTCATATACATCAGCCTGTAGAAGAAGCCACATGAAACATAAATACAGGAAGGCATTCACAACATCCTCTCTTGTTGATCTGAGAAACCAGCTGAAATCTGCTTTGAACAAAAAGATTGCCCCCTCCAAACTAGATCCAAAGTTAGTGTATGTTTTCTGTGGGAATGGTGTGGCCTACCAAGGCATGTGCAAGCAGCTCCTGAAACAGGAACCAGTGTTCAGAGAAAAGATCAAGGAGGTTGAGGCGCTTTTTCAAATGTACCAAAGAATGTCcatcacagagagactggaaaGTGCATCAGTTGATGACGACTTTTCAAAACCAGATGTTGTCCAGCCCCTCCTCTTTGCCATTCAGGTTGGCATTGCCAGTCTCTTCAAGCACTGGGGCATCAAACCAGATGCCATTCTTGGCCACTCTGTTGGAGAGGTTGCTGCTGCCCACTGCTCTGGTCTGTTGTCCCTTGAGGATGCAGTGAAGGTGATTTATTTCCGCAGTACTCTGCAGAATAAAGTCACAGGAGGGAAAATGCTTGTGGTCAGTAACATGGCCGTGTCAGAGGTCTTGAAACTCCTTCCCTCCTACTTAAATAAGGTTTGCCTGGCTGCCTCCAACAGCCCACAGTCCTGCACCCTTGCAGGTGATGCTGATGCTATAGACAATCTGTATCAAAAGCTAAGCAGTTCAGTCAACAGTAAGAATCTGTTCCTCCATGTTCTGGATGTCCCTGCTGCATACCACAGCCAAATGATGGATCCCATCCTCTCTCAAATAGAGGACAGTATTGGCTCTTTACAGGTGAATCATGTTGAGACAGAATTGTTCTCCACCGTGACAGGAAAGGCAGTAGAGCAGCCAGACTTTAGCACAGGCAAATACTGGGCCAGGAACATTCGAGAGCCTGTTTCATTTGAACAGGCAGTGAGATCAGCAACCAAAGACAAGAAGAATGTGGTCTTTGTAGAGATAGGCCCTAGAAGGGCTCTACAAAGGAACATCCAGGAGACTCTGGGAAATGAGACACAAGTGCTCACGTCAGTGCAGCAAAATAAAGACCATGAGACAATGCTGGACACTGTATCCAAACTGTTTGAGTTGGGGGTTCAGGTAGATTGGGACAAGTTCTACAGAGGTTATGAGACATCCCCAACACCTACCCCAAGGTATCAGTTCGATTGTGTGAAGAAAGATGTCATCTTTGAGGCAGCACAGAAAGGTACATCGGGCAGTCATCCTGTGTTAACTCAGACAGGCAATGATGGAAAAACCTTCAGTTGTGATCTGGCCTCAGCCTCAGTGGCTTACCTGCAGGACCATAGAAACAATGATGTTGCCATTGTCCCTGGTGCCCTCTACGCGGAGTTGGGTTTGGCTGCCTTCATGGCCAGTTCCAAATCAAAGGTGCCACTCAACATGCTGCAACTCAGTGTCAGTTTTCAGAGTCCATTTATCATTGCACCAAATTCTCCTGAGATGAGTGTCAAACTGGATCACTTTGAAAACGAGACAACGTTTAAGATACAATCTCCTACAGCAACGTATGCATCAGGCAGCATATCATGCAAGCAAGGGAGGTTGGCTGAGGAACAGTACATCTCTCTAGACTCAGTTTACAAGCGATGCACATCAACTATGAGTACTGATTACTTTTATGATTACCTAAGTAAGAGAGGGTTTCAGTATGGTTCTGTTTTCAGAAACAGGGGAGATGTGCACTATGGTGCAGACTTGATGGAAGCCATCTCTGTTGTAACTGTCCCTGAAGAACTACTGCCTCAGTTGCATGATTTCTGCATTCACCCTGTAGTGCTAGACTACTTGCTACAACTGACTCCAATCACAATAGTGAATGCATTCATGGCAAGGCCTGGCTTCCCTGCAGAAATAGGCAGTTTGACTGTTCACGAACCCCTGCAGCCTGAAATGGTTCTTTATTTGAGAGCCGCAAATGTTGCAGCAGACCATTTCGAAGTATCTGGCTGTTTCACCGACAAAGCAGGTCGGGTCTTGGTTGAACTGAAGCATGTCATAGTCAAGTATCTTGGGAGCCAATCTAATGTTGTTGAAGAGTACTTCTTCCACAATGACTTCAGTGTTGTCTCTGATGACTACAAGCCCATTAATAAACCCAAGGCATTGGTTTTCGCTGACCAGATAGGTGTATCTGAAGCCATGCAAAAACATTTGAGCTCACAGTCGCAATACATCTCTTTCACACATGCCAATGATCTCTTGAGCCGTGGATTCAAAGCGCTGTTGTCAAAATTCAAAATCTCAGACTTGAAAAGCTTTGCAGAAATCTTGTTTGTGTGGAGCAATGACAATGTTACCTCTCATGAAACAGAGGCTATCCTGGAGAACATGGTAAACTGCTGTGAGATGTTCAGACAAATAGTCTTGGAACTGAAGGCTATGAAATTTCCAAATTCCATCAGAGCAATAACCTACCGGTCAGCAGAGAACACAGTGGACCGCATCAGCGCAGGCTTTGCCCTCTCAGGCATGACTAGATCATGCGCTGCAGAAATGTCAGATCTTTCCTTCCAGCTGATTGACATCAGCTCTGTCTCTACAGAGGACATCagagctctgtctcaggttcttgACTCATTCCCATGCAGCCAATACCCAGAATTGGTGGTGAAAGATGGACAGATTCTAAAACCTTACATAGTGCACACTCCCACTGAAAGCAGTGACAACTCACAGGAAAATGTCCACTCTTTGAAGTCTGAGGAGTTCATCCttcagactgctaacccctaCAGAATGACTAGCTTGTCTGCCATTCCTTGTGATGTTGAGCATAAGCACATTGAGGAGAATTCAGTTGAGATTCAGCTCAGTAAGATTTGTGTTCATTCTTCTGACTACTTTCCGGTCAGTGTCTCTGACATGAACTATGGCCCGACAATGTACTGGAACAAACACACATCTCAGGACCACCAGCTTTTTGCTCTAGACTTCAGTGGCACTGTCACAGCTGTAGGGAAAGAGGTGAGCAAACTGAAAGTGGGGGAGCATGTAGTTTCATGTTATCCGACTGCTGCATCTTCTAAGATTGTGATTCCTGAAGCAGCGTGCTACAAGACAAAGAGGCTCACTTTTCTGAAGGAGGCACCCTGTGTGTCCTACTTTGTACTTGCATGGGAAGTCTTGCATCGTGCATTACCCAAAGTCAAACAACAGAGGTTGGGCATCATCTCATCCGTTCCTGACTCAGGTTTGACAAAGGTCTTAGCCCAAACTGCAACAAAATCAGGATGGAATAACATTGTTCTGCCACAGTTTAGTGATCAGCTTCAAAATGTGAACAAGCTTGATGCATTTGTCCTTTTacctccatttgacaaatctcAGTTTGAAAAAGCATGCAATGTTTCCGGTGTGAGACACATTGTTGCTGTATGTGAAAATGAGTGGCAATCCTCCATCTCACAAAATGGCTTCAGATGTGGCAATGACAATGTTCGCATTCAGACTGTTCAAATGTCTAGTACATTGGAAAAGGGATCTATCAGAGCAGAGAAGTCTCACATTTACCATTGGCTCAAATCAATGCATTTGGACAAGAAGTCTTTAGATTTCGAAACCACCATCTTTCAGAGAGTGTCATCCGGTAGCATTGACTTCCTGCCTGTTGAAGAGTCTGAATCATACTTCAGCTCAAAAACCCTGCCTTTTGTGGCACTGAGTAAAGATGATTCCAAAGGCACACTGTCCAACATTAAGTTGTTGCCTAAACCAAACCAGCTTTTCCAGAAAAACTCTGTGTACATTGTCACAGGTGGTCTAACTGGACTAGGGTTTGAAACAGTGAAGTTTATTGCACAGCGAGGAGGAGGGTATATTGTCATTCTTTCCAGAAGCAGTCCCTCGACCGACTTACAGCAGGAGATAAGTAACATTGAGAGTCAGTCTGGCGCCACAGTTGTCAGCTTGCAGTGTGATGTTTCAATCTCTGCACAAGTAGTAAATACCGTTATTGCGATTAAGGAACGTTTCCCCTCTTGTCCAATCAGAGGGGTCTTCCACAGCGCCGTCGTCCTGCATGATGGCCTGATTGAAATTCTTGACAAATCTCTCTATGAGAAAGTCCTGAAGCCCAAAGTGAATGGAGCTCTGAATCTGCATCACGCCACAAAACTCTGCAAGTTAGATTACTTTGTGTGTTACTCCTCCATCTCTGCCTTTATTGGCAATGCAGCACAAACAAACTATTGTGCAGCCAACTCCTTCTTGGACACATTCTGTCAGTACAGGCGAAACATTGGACTTGCAGGACAGTCCATAAGCTGGGGAGCTTTGAACCTTGGTCTCTTGCTGGACAAAGACCATTTCCAAAGATTTCTGGCGGCAAAGGGGATGATGGTCATGGGGGTAGCAGAAATCCATGAGAGCCTAGAACAATGCCTTCTGCTGAACAGACCACAACAGGTTGTCTGCAAGTTCAGTTTCAAAAACCTGATGCGTCATGTTCTTGCTCATAATGCCTCCCTAAACATACGTTTAGGCGCACTGGTGGATGAGGGGATAACAAAAGAAAAGGGGGAAGTTGCAGGATATGACCAAACTACCGTGTCCATGTCACCAAGTGACTACGTCAAGTCGGTGCTCAGGGAAACGCTTGGTGTTGAGAATGATGAGCTGAATGACGATTCTTCTCTCACCGCATTAGGCATAGACTCAATGCTAGCCATGACTTTGCAGAATCTTCTCTTTCAAGACAGGGGTGTGAATGTTCCCCTGGTTAAATTACTGGACCCCAACAGCACACTGTCTACTTTGGTAGCAATGCTAAAAGAGGGTGCAAACCAGGAATCTGAGCTTGGTGATGACCTTGCCTTGGATCTGATGGAAAAGAATGAGGAAGAAAGTTACATGTCTACTGTACTTTAGAGATCAATCAAATTTGATTATTCAATCAAATGTGAATTATTTAAAGCCCCCATGCAGTCTTTATGATTACATTTTTTGAATCACTGTATGTCTAATatatcactgtgtgtgtttgtttcatgaCAATAACTCCAAACATATCTTTTTTTAATCATTGATTTCCCTGAGCCTCCTTTTGCCATTGAAATGCTCAGTCAGATAGTGTAGGCGTCTTGATTTGGTCTTGATGTTTAGCCATACAGAAGGTTAACCTTAGAAATGTTCATATTATTTGAATGATTAAATATCAATACTGCATACATTGTTACTTGAATAAAAATAATTTATGGAAAACTAGTGCAATATAATATGGGATATTTACAAGAGAAGACAAGTGTTCAAAATTCCTATATCAGGCTGaattattttcactatttttctTTCATGGTAAAACGTTGGCAAtctttcaaatatatattttaaattttgACAAAATACATATGTATTATCCTGACATTATCAACTTTTGTTATGTTTTAATTATAGTTTAATCTGCCATTTTTATTTCAACCTTTCTGAGTATCATAGTCAATGTTAGATAATCTTAGAAGTAGTGTATAATGCTTCGTTCATCTCATGCTATTCTTGTTCATTCTGGTTGTGTTCAATAATCTATGTAGTGTGCAGCAGGTGGAGTAGCAATGAAATATCAGTCAAATATGACAACTAAAGATTGGAATGTTAAAAATGGAGCAGAGGTTTAGTGATCTGGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1452213 lncRNA downstream 120073 23023305 ~ 23026796 (-) True G1271201
TU1452092 lncRNA downstream 303040 22843598 ~ 22843829 (-) True G1271085
TU1452089 lncRNA downstream 305957 22840486 ~ 22840912 (-) True G1271082
TU1452081 lncRNA downstream 312499 22833205 ~ 22834370 (-) True G1271074
TU1452053 lncRNA downstream 341294 22801315 ~ 22805575 (-) True G1271047
TU1452304 lncRNA upstream 18918 23175870 ~ 23176099 (-) True G1271285
TU1452306 lncRNA upstream 21040 23177992 ~ 23178191 (-) True G1271287
TU1452316 lncRNA upstream 39500 23196452 ~ 23203364 (-) True G1271297
TU1452318 lncRNA upstream 47635 23204587 ~ 23204788 (-) True G1271299
TU1452390 lncRNA upstream 213496 23370448 ~ 23370759 (-) True G1271370
XM_021562737.2 mRNA downstream 24043 23060684 ~ 23122826 (-) False LOC110489811
XR_005036061.1 mRNA downstream 24043 23060684 ~ 23122826 (-) True LOC110489811
XM_021562733.2 mRNA downstream 191105 22907916 ~ 22955764 (-) False si:dkey-225n22.4
XM_021562735.2 mRNA downstream 191105 22907916 ~ 22955764 (-) True si:dkey-225n22.4
XM_036945575.1 mRNA downstream 247628 22898112 ~ 22899241 (-) True LOC110490829
XM_021562748.2 mRNA upstream 55165 23212117 ~ 23221568 (-) True pks1
XM_021562746.2 mRNA upstream 64740 23221692 ~ 23242314 (-) False LOC110489819
XM_021562747.2 mRNA upstream 64740 23221692 ~ 23242314 (-) True LOC110489819
XM_036944080.1 mRNA upstream 96934 23253886 ~ 23275123 (-) False acbd5a
XM_021562751.2 mRNA upstream 96934 23253886 ~ 23275145 (-) True acbd5a
TU1450121 other downstream 1343517 21802687 ~ 21803352 (-) True G1269265
TU1449275 other downstream 2186780 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 2856196 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 2878381 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 3693099 19435018 ~ 19453770 (-) True G1266708
TU1452449 other upstream 556403 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 556403 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 556403 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 556403 23713355 ~ 23728939 (-) True G1271421
TU1455797 other upstream 2889296 26046248 ~ 26048524 (-) False G1274532

Expression Profile