RNA id: XM_021562748.2


Basic Information

Item Value
RNA id XM_021562748.2
length 8073
RNA type mRNA
GC content 0.44
exon number 6
gene id pks1
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23212117 ~ 23221568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATGGTCAACACTGGATTTCAGCTCAAGTGCAAATTAACTTTAAAGGTAGAGTTTGCGATGCACGAAGTAAACGGCAATATTGGACTTCCCTAAAACAACTCGGTGCAAAGCACAAAGTAGAATTTCGGGTGTTTTCTCCCGCAGTTATCATGTTGCAGTGGAGTGCACATATACTGTGAGTGCATTGTCTTTCTATTCTTTGACCTTAATCGACCTGATGTTGGAAAGACGGACCTGAGACTGCACTCTTTCTGTTAGCCAAATTACCCTCAATCACAGAAAACGGTCTTGGATGTCTCCCATCATTTCCTGTCAATGTAGTCATCTTAGTATTGGTTCCCCTTGAGGGAGAAGCCTAGCTCTCCTTCCCCTCGTTAGATGCAATTGGTCTGATATTCTATAGACGACGATGGAACCGTTTTAGTCACCACATCTATTTTATCCGTGTAGTCTGTCTAGGTTTTGTAATAATGATAACTGAACAAAGAGATTTCAATAAAAAGTCTGGGCAACAGAAGAGAACATAAGCATCCATTGTATGCACCTGAACAACTTAACCTCATCTCAAGCCTGCAATTAGTGACTTCTGTTTCAAACTACCCTAATTAAAAATTGCTCAAAAGCTTCTCTAACAAATCAATCTATTGTTGGAGCCCCTGCTCCCTTTGTCTTGATGCATCTGACTGATCAGTGAGACGTTAGTTGATTTATAAAGAGGACCAGGGGTAGAATATGAAAGCTGTGGCAAGAGGACAAACACCGCTCCAACAGGAATGGTTCAGCTGCCAGTAAAGACTGTTTTGCAAAAAATGTGCTTTCGACAAAACTTTGAGGGACTTTGAAACAGCATCCTCCATTCATCACAGTCTTTGGACAGGTCAAACGCATGAAAGACTGTTCTCAAGGTCACATGATTTTACATTTTGTCAAAGGTTGTTTGTAATGAGGTGCAAAGATGGAGGACAACAAAGACGAAATTGCCATAGTTGGGATAGGATGCAATTTCCCAGGAGGTGAGGGGCTTGACaatttctggaaggttctattgGAAGGGAGGAACTGTGTAGTAGACATTCCAGACGAGAGGTTTGACAGCACTTATTGGTATGATCCTGATGATAGCAAACCTGGGAAGACGCAAACAACCAAAGCTGCTCTTATAGATGGGTTTAATGAGTTTGATCACAAGTTCTTTGGCATCACTGAGGCTGAAACGGATTTCATGGACCCTCAGCACAAGCTCCTACTCCAGTGTACATACAGGGCATTAGAGGATGCTGGAATGCCAATGGAGAAAGTCAGTGGGACCAGAACAGGTGTTTACATAGGTCTCATGAACAGGGACTATGAGACCCTCCTGAACAACAGACCCAGCACCATAACCCACTACAATGGCACAGGGACGGCTATGAGCGTGGCGGCCAACAGGATATCCTTCATCTTCAATCTCACTGGTCCCTCGTTTGCCATAGACAGTGCATGTTCCTCCTCCTTGGTGGCTCTCCATTCTGCCTGCCAGGCCATCAAGCAAGGAGACTGTGAAATGGCTCTCTGTGGCGGTGTAAGCTGTATCATAGAGCCGCGAGTCTTTGTCGCTCTCAGCAAGGCAAAGATGATTTCACCTGAAGGCACCAGCAAACCTTTCTCCAGCAGAGCAGATGGCTATGGCAGAGGAGAGGGCTGCGGGATTATTCTGCTGAAGCCACTGAAAAACGCTCTGAGGGACTTTGACAAGGTATGGGGCATAGTAAGAAGAACTGCAGTAAACCAAGATGGTCACACGGTCACTCCAATCACCAAGCCATCCATGGTCCAGCAGGTAGAGCTACTACACAGAATCTACTCGGCAGAGTCTGACCTGTCATCTGTCCAGTACATAGAGGCTCATGGGACTGGAACTCCAGTGGGGGATCCCATAGAAGCAGGCAGCATCTCCAAAGTCATTGCCAAAGCCAGACCTCCAGGTTCAGAAACACTCCGCATCGGCTCTGTGAAAGGCAACATTGGACACACAGAATCTGCAGCTGGAGTGGCAGGTCTAATCAAGGTACTCCTAATGATGAAGCATGAAACCATTGTCCCTTCACTGTTCTACTCTGAGGATAGTGCCAGTATCGATGCCAAAGCTCTCAATGTAAGAGTTCCGATCAAAGCAGAGAAGTGGGAAAAAACAGAGCCCATGGCAAGGCTAGCTGGCATTAATAGCTTTGGGTTTGGAGGGACAAATGCTCATGCGATAGTGAAGGAGTATGTGCAAGGCAACAACACCAGATTGACTACTTATGACAGTCCCAAGTTGTTTGTTTTGTCTGCAGCCTCTGAGAACTCATTGGCAATGTCTATCACAGACACATATCAAAGACTTAGCAGAGATAAGCAAACTGACATACTCACTTTGATGTTTACCTCAGCATGTAGGAGGAGCCATTTGAGACACAAATACAGGAAAGCATTTATGACGTCCTCTGTCCCCGACTTAGAGAATCAACTGCAGTGTGCGATGAACAGGAAGCTTGAGCCATCAAGGTCAGATAACAGGTTGATTTTTGTGTTCTGTGGGAATGGAGTGACCTACAGGGGAATGTGTAAGCAGCTTCTGAAAGAGGAGCCAGTGTTCAGAGAAAAGGTCAGAGAGGTTGAGAATCTCTTCCAGAATTACAAAAGTACTGGCATCTCACAAAAGATAGCAAACGATTTTGACAATGATGATTATACCAAGCCAGATGTTGTTCAGCCCCTCCTCTTTGCCATTCAGGTTGGCATTGCCAGTCTCTTCAAGCACTGGGGCATCAAACCAGATGCAATTCTTGGCCACTCTGTTGGAGAGGTTGCTGCTGCCCACTGCTCTGGTCTGTTGTCCCTTGAGGATGCAGTGAAGGTGATCTATTTCCGCAGTACTCTGCAGAGTAAGGTAACAGGAGGGAAAATGCTTGTGGTCAGTAACATGGTTGTGTCAGAGGTCCTGAAAATCCTTCCAATCTACTCTGGGAAGGTTTGCCTGGCTGCTTTCAACAGCCCACAGTCCTGCGCCCTCTCAGGTGATGCAGACGCTATAGACAATATCCATCAAAAGCTGACAGCTTTGTTTAGAGGAAAGAATCTGTTCCTCCGTGTACTGGATGTACCTGCTGCATACCACAGCCATATGATGGATCCCATAGTGGACCATATTGAGGAAAGTATTGGTTCTTTGACAGCGAACAAAATGGATTGTGAGCTTTTCTCAACAGTGACTGGAGACATGTACACCCATGGAGACTTTAGCACAGGGAGATATTGGGCTAGGAATAtccgagagccagtttcattcgAGCATACAATGAAAGCAGCGACCAAAGACCAGAAGAATGTGGTCTTTGTGGAAATAGGCCCTAGAAGGGCTCTACAAAGGTACATCCAGGAGACTCTGGGAAATGACACTATAGTTCTGTCCTCAGTGCAGCCAGAAAAAGATCATGTGACAATGCTGACCACTGTGTCCAAAGTGTTTGAACAGGGGGTCCATGTAGACTGGGACAAGTTCTACGAAGGCTGTGAGGCATCACCAACACCTCTTCCAAGATATCAGTTTGATAATCTGACAAAAGAGGTATATTTTGAGGCTGTAAGACAAGGAAATGAAAAAACAGCTTCCTCTCAACACCCACTGATATCTCAGACAAAGCATGAGAGCAAAGAGCACAAATGCAATCTTTCATCAGATACTGCAGCATATCTCTGGGAGCACAAAAACAATGGTGTTGCCATTGCTCCAGGTGCATTGTATGTTGAACTGGCTTTTGCCTCAATAATGGCAAGTTCAAGACCAAAGATGCCGATTTGCTCGATGCAGCTGAGTGTAACTTTTCACAGCTTGTTTACACTCAGCACAAACTCTCAGAGTTTGAAAGTAGTACTGGAGGCAACCGAGAATGAGACCATGTTTAAGATACAATCTCCCTCAGCAACACACGCATCAGGCACCATTTGTTGTCGAAGTGGACGAACATTGGTTGAGGAACAAACCATTTGCCCGGATGTCATTTTCAAAAGGTGCAAATCCGTGGTAAAGGGGGAGGAGATCTATTCATTCCTCTCCCGTGCAGGTTTTGAGTATGGTCCTATTTTCAGACAGCTGGATGATGTACATTTCGGCGATGAATTCAAGGAGGCGGTGTCAGCAATTAAGGTCTCGGGTGAGGTGCTGAAACAGCTTCATGAGTACTTCCTTCACCCTGTGGTGTTGGACTATTTTCTGCAAATGACTGCTATGGTAGCTGTTGGAGGACTGACCACCAGGCCGGTTTTCCCATCTGCCATTGGCAGTGTGGTAATAGCAGCACCTCTGCAGGAGGACATGATTATGTATCTGAGAGCAATTCAAGAAACCTCAGACTACTTAGATGTTTGTGGTTGCTTTTCCAATAAAGACGGACATGTTTTAGTGGAACTAAAGCATGTGAGGATCTCGTTTTTAGGAAATTGTTCACATGTTGCAGAGTCATTCTTCTTTCACAATGAACTTTTCACCATCACTGACAATACCCATGTAAGCCGTAAACCCAAAGCCTTGATCTTTGAGGACATCCTGGGAGTTGGCACAGCATTGAGGCCATACCTACACCAAACATCATTTTTTGTCTTGAACAGAGAGTTTGGAACCAACCCACAAGTTCGAGACTTAGTGTCTCACTCTCTTCAAGGTGATGCTGGTGTAGATTCACAGGAGGTACTGTTCATGTGGGGTGTACAAGACCTCAGTCATCTGTCGACTGAGATGGCATTGGAATGCTTGGTTGACTGCTGTGAGCATTATCGTCAGATTGTTCTTGCCTTGAAAGAAAACGAGTGTTCCTGCACAATCCGAGTCATAACCTACCGTTCAGCAGAGACGACCGTAGACCATGTCAGTCCTGGTTTTGTCCTGTCCGGCATGACAAGAGCCTGTGCTGCTGAGATACCAGGCCTCTCCTTTCAGCTGATTGACCTTGCTTCTGTGTCAAGTGAAGACATTCAGGCATTGGTTCATGTGATTAACACCAGCAAACACCCAGAGGTCATGATTAGCAGGGGCCAGATATATTCAACAGTGATAGTCCGTACGCCCATAAAAGGGATTGCCAGCTCTGAGGGAACTGTCTACTCTTTGAGTTCTGGGCAGTTCATCCTTCAGACTGCTGATCCATACAGAATGACTAGCTTGTCTGCCATGCCTTGTGATGTAAAGGATAACCACATCCAGGAGAAATCAGTTGAGATTCAGCTCAGTGAGATTTGTGTTCATTCCTCAGACTATTTTTCTGTCAGCGTCTCTGATCTGAACTTTGGCCAGACAATGTACTGGAACAAACATGCTTCTCAGAACCACCAGCTTTTGGCCCTTGACTTCAGTGGCACTGTCACAGCTGTAGGGAAAGGTGTGAGCAAACTGAAAGTGGGAGAGCATGTAGTTTCATGTTATCCTATTGCTGCATCTTCTAAGGTTGTGATTCCTGAAGCAGCATGCTACAACCCGAAGAGGCTCCCATTTCTGAAGGAGGCTCCATGTGTGTCCTACTTTTTGCTGGCATGGGAAATCTTGTACAAAGCGTTACCCAGAGTCAAACAACAGAGAAGGTTGGCCATCATCTCCTCTGTACCTGACTCTGTTCTGCTGAAGGTCTTAACCCAAACGGCAAACAAATCAGGATGGAATGCCATCGTTCTGCCCCAGTTTAGTGGACAACTCCTGAACATTGATCAGTGTAATACATTTGTTGTATTGCCTCCCTTTGATCCATCTGTAGTGGTAAGAATAAGCAGTGGAGCCACAGCAAAGCATATTGTTGTAGTCTGTGACAACCAGGTGTCATCCTCAGCAAACATTTTTGCACATGAGAGTGAACATACACACATCCAAACACTTTACGTGTCAAATGTTTTCCAGAGAGCCAATATAAAGGCACAGAAAACAAAGATCCACAATTGGCTGAGGTCATTACATTTGGATGGTGTATCGCAATCTCTGCAAACCATTACCTTTCAATCGACAGACACAAGAGATCCTCAGCCCACTGCGCACTGTGAGTCCTACTTCAGAGCTAAGGCTGTGTCTCAAGTAGTTTTGGGTCATGCGGATTCAGAAAATACACTATCTGATATCCCTTTGCTAATGAGACCACGGCAGCTCTTTAAGAAGAGTTGTGTGTACATTGTAACCGGAGGGCTCTCGGGTTTGGGACTCGAGACTGTGAAGTTCATTGCTCACAGGGGTGGTGGATGCATTGCAACCCTCTCCAGAAGTCCTATGTCAGCTGAGATGCAGTTGGAGATGGACACTCTCCAGAGGAGATGTGGGGTGTCTATCATGAGTGTCCAATGTGACGTGTCAGTGTCAGGGCAGGTTGTGAATGCAATCACAGCAATTGTACAAATGTTTCCCTCCTGTCCAATCAAAGGAGTGTTTCACAGTGCAGCTGTGTTGCATGATGCTTTGATCGAAACCCTTGACCGATCACACTTCAATGAAGTTCTTCGACCCAAAGTGAATGGGGCATTGAATCTTCACTATGCAACACAGCACAACAAATTGGATTACTTTGTGTGCTACTCTTCCATCTCTTCGTTCATTGGCAATGCTTCGCAGTCTAACTATGCAGCAGCCAATTCGTTCCTGGACACTTTCTCTCATTATCGGCGAAACCTTGGGCTTGCTGGACAGTCCATCAACTGGGGGCCTTTGAACCTCGGTCTCTTGTTGAACAGAGACAATTTCCAAAGGTTTCTCGAGGCAAAGGGCATGATGATAATGGAGGTGTCAGAAGTCCATGAGGCCCTTGAAAAGTGTTTGTTGATGAACAATCCACAGCAAGTCATTTGCAAATTCAACTTCAGAAATCTGAGCAACCACGTTCTCTCCCAAAACGCATCTCTCAGAGGCAGGCTGACAGCTTTGGTCGAGCAAGAACTTGAGAACACCAACATGACAGAACCCATTGTCCAACAGCTTTCCACAGCACATGAGAATGTCAGGGCTATGCTAAGTGAGATCACCAGTGTTAGCATAGATGAGGTAAATGACGACACTGCCCTGTATGCACTGGGTATTGACTCAATGTTGGCTATGACTCTGCAGAATTACATCTTCCAAGAGAGAGGTGTGAATGTTCCCCTGGTTAAACTACTGGATCCAAACACCACACTGTCTACATTGGTAACACTTCTGAAAGAGAGTGGGTAAAACAGCAATGTGTACTAGCAACATTGAAATATTTTACTGAGGGTTTTGGATTATAACACTGTCTAATATAATTTGTATTGGTAAATGTTCCGTTTATTTTAAAGgatgctacagtgccttcagaaagtattcagaccctttgacttcctccacatgttgtgacgttacagccttattctaaaattgattaaattgttttttcccctcgtccatctacacacaaaaccccataataaGAAATTCAATTTTTGCAAATTTGTTACAAATATAAAAAACAGttaaaccttatttacataggatTTCAGCCTCTTTGCTATCagattcgaaattgagttcaggtgcatcctgtttcccttgatcatccttgagatgtttctacaacttgattgagtccacctgtggtaaattcaattgattggacatgatttggaaaggcaggaTCAAgccaaagatgaatggagcaaagtacagagagatccttgatgaaaacctgctccagagcgctcaggacctcagattggggcaaaggttcactccccaaatacaggggtgCCAAGTTTGTAATAGCTACCAAAAGTGCTTCAatatagtactgagtaaagggtctgaatacttatgtaaatgtgatatttccgatttttttttatttttaaattagcAACAATTTCTGTTTGTTAACATTGCATGTTAACATTTTGTGAAATGGAGGTTTAGAGTTTTGTTGAGTGTGGCTTAAAGTCTAAGTTGCAAAAATACCCCTACTCCATTGATACGAAAAGCTCATTGAATTATCCAGTGACATAATCAAAGCCTGAGGTTTTGTcaactatattatactatattaccAAGAATAAAGGCACATTTTCAGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1452318 lncRNA downstream 7329 23204587 ~ 23204788 (-) True G1271299
TU1452316 lncRNA downstream 8753 23196452 ~ 23203364 (-) True G1271297
TU1452306 lncRNA downstream 33926 23177992 ~ 23178191 (-) True G1271287
TU1452304 lncRNA downstream 36018 23175870 ~ 23176099 (-) True G1271285
TU1452213 lncRNA downstream 185321 23023305 ~ 23026796 (-) True G1271201
TU1452390 lncRNA upstream 148880 23370448 ~ 23370759 (-) True G1271370
TU1452396 lncRNA upstream 183319 23404887 ~ 23407463 (-) True G1271376
TU1452599 lncRNA upstream 515261 23736829 ~ 23737030 (-) True G1271556
TU1452600 lncRNA upstream 515792 23737360 ~ 23737699 (-) True G1271557
TU1452602 lncRNA upstream 517337 23738905 ~ 23739115 (-) True G1271559
XM_021562739.2 mRNA downstream 55165 23146869 ~ 23156952 (-) True LOC110489813
XM_021562737.2 mRNA downstream 89291 23060684 ~ 23122826 (-) False LOC110489811
XR_005036061.1 mRNA downstream 89291 23060684 ~ 23122826 (-) True LOC110489811
XM_021562733.2 mRNA downstream 256353 22907916 ~ 22955764 (-) False si:dkey-225n22.4
XM_021562735.2 mRNA downstream 256353 22907916 ~ 22955764 (-) True si:dkey-225n22.4
XM_021562746.2 mRNA upstream 124 23221692 ~ 23242314 (-) False LOC110489819
XM_021562747.2 mRNA upstream 124 23221692 ~ 23242314 (-) True LOC110489819
XM_036944080.1 mRNA upstream 32318 23253886 ~ 23275123 (-) False acbd5a
XM_021562751.2 mRNA upstream 32318 23253886 ~ 23275145 (-) True acbd5a
XR_005036063.1 mRNA upstream 113904 23335472 ~ 23337723 (-) False LOC118938792
TU1450121 other downstream 1408765 21802687 ~ 21803352 (-) True G1269265
TU1449275 other downstream 2252028 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 2921444 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 2943629 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 3758347 19435018 ~ 19453770 (-) True G1266708
TU1452449 other upstream 491787 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 491787 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 491787 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 491787 23713355 ~ 23728939 (-) True G1271421
TU1455797 other upstream 2824680 26046248 ~ 26048524 (-) False G1274532

Expression Profile