RNA id: XM_021562753.2


Basic Information

Item Value
RNA id XM_021562753.2
length 3584
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110489823
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23275513 ~ 23342095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGGCCACAATAAGAAATGTTACGCGAGCATGCAGCCCGGGCATAAAAGCATTTCGCGTTGATATGTTGTATCAAATTTGACGACTGTTGCCATTCGGAAACCCAGAAAATGATACATTGTAACACTACGTATCCCAGCATTCTACACTGTGATCCATGTTGGTTGTTTTTTTGCGGGTGGCTGATAGGTTGCGCCGGTGTGAAAGCGAGGCCAAGAATCCCACTATACCAGGCGAAGgagtttcttctttttttctccgAAGCAGAGCTGGTGGTTTCAATCAAAGGGAAGGCGAGGAAGCTATGCGGGGCGATGTAAGATGGCAGAGCTGCAAATGTTGTTAGAGGAAGAAATTCCAGCCGGTAAAAGAGCTCTTATAGAGAGTTACCAGAATCTCACGCGGGTAGCAGACTACTGTGAAAACAATTATGTTCAGgCCACGGACAAGAGAAAAGCTCTGGAGGAGACCAAAGCCTACACCACCCAGTCTCTGGCCAGCGTGGCCTACCAGATCAATGCCTTAGCCAACAACGTGCTGCAGCTGCTGGACATCCAGGCCTCGCAGCTGCGCCGAATGGAGTCCTCCATTAACCACATCTCTCAGACGGTGGACATCCACAAGGAGAAGGTGGCCAGGCGAGAGATCGGGATCCTCACCACCAACAAGAACACGTCGAGGACCCACAAGATCATCGCCCCTGCCAACATGGAGCGGCCGGTCCGATACATCAGGAAGCCCATCGACTACAACGTGCTGGACGATGTGGGCCACGGGGTCAAGTGGCTCAAAGCCAAGCATGGAAATAATCAGCCAatcagaggaggaggaacactATCGAGGACCAATCCGCCGACACAGAAGCCGCCTAGCCCGCCGCCCGTGACGGGGCCGATGTCAGGGCGTGGCACTCTAGGACGCAACACGCCCTATAAAACTCTAGAGCCGGTGAAACCGCCCACAGTGCCCAACGACTACATGACCAGCCCTGCTCGTCTAGGCAGCCAGCACAGCCCGGGTCGCACTGCATCTCTCAACCAGAGACAAAGAACCCACAGtGGTAGCAGTGGGGGTAGTGGCAGCAGGGAGAACAGCGGAAGCAGCAGTATTGGCATTCCCATCGCAGTGCCTACGCCCTCCATTCCCAACTCTGGTCCAGTCCCGCCAATGTCCGCTCTcccacccccccctcctccacttcCTGGTCATCAGGCTCCTCCGCCGCCTCCTCTCCCGGGGCAGGGCAACCCAGGGGCTCCTGCAGTGACAGCGGTGGCTCCCGGGCCTGGTCTTGGCCCCATCCCCATGTCCCAGTTCGGCACCATCTCACGGCAGATCTCACGGCACAACTCCACCACCTCCTCGGTCTCCATGGTTTCGGCCACGGGCACCTACCGCAGGGCGCCGTCCGTCAGCTCCCAGTTctccctgcagcagcagcaggccctACAGCTACAACAGCAGCAAATACAGCAGCCATACATTAATGGGGGCACCCCCGCCTACCCCCACAACTCAATGTCTAtcgctccccctcctcctcccatgcCCCAGCTGACTCCACAGATACCTCTGACAGGCTTTGTGGCCAGGGTGCAGGAGAACATTGCGGACACACCTACTCTGCCTCCGCCGCCTCCGCCGGATGACCTGCCCATGTTTGATGaggctcctccccctcctccacccccgccAGTTGActatgaggaggaagaggaagcagCTGTGGTGCACTACAACGACCCTTATGCTGACGGAGACCCCCAGTGGGCGCCCAAGAGCTACATAGAGAAAGtGGTGGCCATCTACGACTACGCAGCAGATAAAGACGATGAGCTGAGCTTCATGGAGGGAGCCATCATCTACATCATCAAGAAGAATGATGACGGCTGGTTCGAGGGCCTAAGCAGCGGGGTCACGGGCCTGTTCCCCGGCAACTACGTTGAGTCCATCATGCACTATGCCGAGTGAAGGCAACCCCCACTGCAGTGTATTGATTCAGTCATATCTAGTTTACTACAGAGACTAATAAAAACAGGAGTCTGACCATACAAAGCTTAGAGAAGTGATTTTGGATATGACAGAACTCTTGTTCCCTTATACTGATTGCAAATAAATACAACTATTTACTTTATTTAGGTGTTATGGGTGGGTTGGGGGACGTTTTTATCAAGTATACAAAGAATGAATAGGATAAGCCTGATGACGTGCTCACAAGGGTTGTGGTGTAAAGGTGTTTTCAAAGACCACGGTAAAACTAGCTGAAGGACATTTCAAGTTTTATTCTTCTTCCTGTCTACATATGCGCAACATAACATCTGACCCTGACTATTCATTAGCGTTTGTCGACGTCTAGTGACCTATACATTATTCATGAGCTTATCGTGATTTCTTTGTGTATCAAGAGTATTATGCTATATGGAGCAGCTCTCATGCATATGTAGGCATTCTGGTGATCTTGTGTGCACACCTTCAGTGGAAGTGTTACTACTGCTAATTGTATATAATGTGAGTGAGCTGCAGCCTGTTGGGTGTCTGTAGAGTAAATGCTAATCACAGTATCTCAAGCAGGCTACATGCCACACATGCAAATGTCCAACATAAGATTCTGTTCTGTTTTCTATAATCACGGTTCTCACAATCACAAGGCTGATCCATTTTGGATGTTGAATTCAAACTTCAATTGCTTTTTATGAATAACAAAACCTTTCACTTTTTATTTCAGTCATTCCTGAAATTAAGTCTGGATGTAAAGCATGCTAAATTAAACATGTATAACCTCTACGTTTTGATGCCATTATGCTTCCATTTTGTTGTAATATTtccatgttatttttttattgattGAATTACCTAGATATAAAAGTCATTTTCGGACTTGTTGATGTGATGGTCTTATTTGTATTTAAACATTtgatattacatttacatgaaaATGTTCCATCTGGTAATGTATCTAAAGCAACTCCACAGTAATGTTTTACTCATCTGTAGGCATAAGTATAATGTAAGAGATTGTAATTCATAGTGTTCGTGGGCTCAGTTTTCAAGTGATGTTTTACTGTTCCGTAATAATGGAGACCAATATGACAACTCGGATACCTCCTCAGTCTTCACAAAGTAAAACTGGGTTTAGATCTGTCGTTTTTAACCTGTAATGGTTTCATAACTCAGGTCTGGATTTCTTGATGCCAAATTGTTTCTTTTATTGTTCCAAATtgaccccacccactttgtcCATGTTCATTTATAGTTGTAATTATCCCTTCGACAGACTATCGATTGCTTCATGACAATTCAGGTAGGTGTTTATGGTTAAGCTGCAAAATTGCAGACTTCACCAGTTTCTTCCTACATGTCTTTCCTGTCCGGACTCAAAACATGAAAGTAACTGCACTTGTCACTGTTGACCATTTCAGGTTATAGCAGCTAATGCCTTGATGCTTTGTTATATTCAACATATACAAGTGTTCCAGCTCAATGGGTAGATATCAAAGCTCTCATCTCTGCccttagtttgtgtatatatatgttcATTGAAAAATGAATGTACAGTCTTTTATAATAAACCATTGTACAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451527 lncRNA upstream 14705 23260257 ~ 23260808 (+) True G1270563
TU1451529 lncRNA upstream 57048 23212121 ~ 23218465 (+) True G1270565
TU1451562 lncRNA upstream 87559 23187703 ~ 23187954 (+) True G1270595
TU1451488 lncRNA upstream 147949 23122954 ~ 23127564 (+) True G1270541
TU1451487 lncRNA upstream 151108 23122954 ~ 23124405 (+) False G1270541
TU1451611 lncRNA downstream 32695 23374790 ~ 23375273 (+) True G1270639
TU1451612 lncRNA downstream 33300 23375395 ~ 23375630 (+) True G1270640
TU1451619 lncRNA downstream 42659 23384754 ~ 23385062 (+) True G1270647
TU1451523 lncRNA downstream 56029 23398124 ~ 23399031 (+) False LOC110510445
TU1451524 lncRNA downstream 56029 23398124 ~ 23399121 (+) True LOC110510445
XM_021562749.2 mRNA upstream 21727 23248095 ~ 23253786 (+) False mastl
XM_021562750.2 mRNA upstream 21727 23248096 ~ 23253786 (+) True mastl
XM_021562745.2 mRNA upstream 63616 23204933 ~ 23211897 (+) True ptchd3a
XM_021562742.2 mRNA upstream 72154 23189104 ~ 23203359 (+) False LOC110489817
XM_021562743.2 mRNA upstream 72154 23189322 ~ 23203359 (+) False LOC110489817
XM_036944081.1 mRNA downstream 8313 23350408 ~ 23368812 (+) False LOC110489828
XM_021562772.2 mRNA downstream 8314 23350409 ~ 23368812 (+) True LOC110489828
XM_036944099.1 mRNA downstream 45441 23387536 ~ 23399051 (+) False LOC110510445
XM_021562779.2 mRNA downstream 97747 23439842 ~ 23445587 (+) False LOC110489836
XM_036944101.1 mRNA downstream 116013 23458108 ~ 23658840 (+) False prex2
TU1451171 other upstream 138792 23132859 ~ 23136721 (+) True LOC110489812
TU1449889 other upstream 1481260 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 2434115 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 3595408 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 4413002 18860111 ~ 18862511 (+) True LOC110489737
TU1451615 other downstream 35213 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 64565 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 103743 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 324376 23666471 ~ 23695181 (+) True LOC110489839
TU1452905 other downstream 904328 24246423 ~ 24250283 (+) True G1271852

Expression Profile