RNA id: XM_021562779.2


Basic Information

Item Value
RNA id XM_021562779.2
length 871
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110489836
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23439842 ~ 23445587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctcaccggacacttctgatctccagcaccatgggcacccctacagttAACACAAATGTTTTCCACCGATACTagacattcctttgtctcatgcccttctacGCACTTCTCACATTTGGAAAtatccctcctacacactgctgcaacatgatcATTGGCTTTTGTCGGATGAAGACTCAGCAGGACACGACCGAGACTGCGTCGCACCAAACGACGGGTACCACCGTCTGTGTTCGACTGTTGTAGTCTGATGATTCCTATCGTCCATTTATCAATTGATTACTTAGGTCTTTTTCAAACTAAACATGGCGGCCACCCCAGCTACAAATCCATCACAGTTGCTCCCACTTGAGCTCGTGGACAAATGTATAGGTTCCCGAATCCATATAGTCATGAAAAACGACAAAGAAATTGTCGGCACCCTGTTGGGTTTCGATGATTTTGTCAACATGGTGTTGGAGGACGTGACAGAATTTGAAATCACACCGGAGGGAAGAAGGATAACCAAACTGGACCAGATCCTACTCAACGGCAACAACATCACCATGCTCATACCTGGAGGCGAAGGGCCTGAAGTATGAAAAAAGAAGCAGAGTTTTTATCTGAAACATTTTATGTTCTTGTGGATGTATACTTGCCTTCCCATCAGTACTTACTTTAGCCAGTTTGTGATAatgttatattttgggttctttCTTTCAGTTTTGAGAAGATTTTTGTAACAAGTGTTTTTCCTAATGAAGCCTTGATAATGTGTGTACAGAGCAACAGGTGATTTGACCTTTGACATGTAAACCATTTCTACCATGTAGTGGAACTACACATTTTTTCttataaataaataacagaataAGTGTCATTGGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451624 lncRNA upstream 34528 23403079 ~ 23405314 (+) True G1270651
TU1451524 lncRNA upstream 40721 23398124 ~ 23399121 (+) True LOC110510445
TU1451523 lncRNA upstream 40811 23398124 ~ 23399031 (+) False LOC110510445
TU1451619 lncRNA upstream 54780 23384754 ~ 23385062 (+) True G1270647
TU1451612 lncRNA upstream 64212 23375395 ~ 23375630 (+) True G1270640
TU1451647 lncRNA downstream 251 23445838 ~ 23451494 (+) False G1270669
TU1451842 lncRNA downstream 267207 23712794 ~ 23716562 (+) True G1270844
TU1451846 lncRNA downstream 275502 23721089 ~ 23723367 (+) True G1270848
TU1451847 lncRNA downstream 275701 23721288 ~ 23723683 (+) True G1270849
TU1451884 lncRNA downstream 335670 23781257 ~ 23804723 (+) True G1270885
XM_036944099.1 mRNA upstream 40791 23387536 ~ 23399051 (+) False LOC110510445
XM_036944081.1 mRNA upstream 71030 23350408 ~ 23368812 (+) False LOC110489828
XM_021562772.2 mRNA upstream 71030 23350409 ~ 23368812 (+) True LOC110489828
XM_036944083.1 mRNA upstream 97747 23275530 ~ 23342095 (+) False LOC110489823
XM_036944101.1 mRNA downstream 12521 23458108 ~ 23658840 (+) False prex2
XM_036944100.1 mRNA downstream 12522 23458109 ~ 23658840 (+) True prex2
XR_005036067.1 mRNA downstream 221082 23666669 ~ 23835443 (+) False LOC110489839
XM_036944102.1 mRNA downstream 221082 23666669 ~ 23836438 (+) False LOC110489839
XM_036944103.1 mRNA downstream 221082 23666669 ~ 23836438 (+) False LOC110489839
TU1451627 other upstream 31840 23406660 ~ 23408002 (+) True G1270652
TU1451615 other upstream 62282 23377308 ~ 23377560 (+) True G1270643
TU1451171 other upstream 303121 23132859 ~ 23136721 (+) True LOC110489812
TU1449889 other upstream 1645589 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 2598444 20840295 ~ 20841398 (+) True G1267949
TU1451648 other downstream 251 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 220884 23666471 ~ 23695181 (+) True LOC110489839
TU1452905 other downstream 800836 24246423 ~ 24250283 (+) True G1271852
TU1453311 other downstream 942825 24388412 ~ 24403661 (+) False G1272220
TU1453690 other downstream 1296316 24741903 ~ 24743805 (+) True G1272573

Expression Profile