RNA id: XR_005036067.1


Basic Information

Item Value
RNA id XR_005036067.1
length 2516
RNA type mRNA
GC content 0.56
exon number 16
gene id LOC110489839
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23666471 ~ 23836438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCTACTGTGTAGTAAACCAAGTAGAGCGAAGCGCAGCGCGAGAGTACCTGCTACTTTCCACTTGCTACTTTCCACTATGCGCGGTGCGGTGAAGCAAACCCACCGCTCTTGACGCCCCTACTGTATATCTGTTGCGGTTATCCATCGCTGTGTGCACTTGGCTACAGTTGTAGTTCTTAAAGGTGTTTGAATTCGACTCTCGTATAGGCTACCCATTTTAATGAATGTATGGGATTGCCCCAACGTTTATTTTCAAATAATTTACGTTTAATGCAAGACGTATAGTTTCTTCATGGCGTCTCAACAGCAGTCAAGAATTCAGTCGTATCTGGAGAAAAATAAAATTGGACCGCTGTTTGAGGAGATGATGACCAGTCTGATAAGCGAGACCCCAGATCACCCTATTCCTTTTCTCATCAATCACCTGCAGACCAAGCAAGGCAGCCCCGGCAAGCTGCACAGGACACTGTCGGGCTCCGCCGCACTGTGGGCCCAGAGCTCTGCagCAGAGAGTAAAGGACGTCGTGACTTCAGGAGTTATGAGAAGCCCTGGCAGATCCATCCTAAGAAACCCAAGAAGTCTAAGAGTGATCTGGCTGTGTCTAACATCTCCCCTCCCTCACCAGAGTCCAAGTCCCtGCCGCGGTCCATAGAGCACCCATCGTGGGAGTGGAGGGAGAGCAAAGACTTTGATGAGCTCAACCACATCCTGCAGGAGAGCAAGAAGCTGGGCAAGGCTCTGGAGAACCTGTCACGCAGTATCGCTGCTTCTGATGAACTTGATCAGAACCTTGGGGGGTATAACTCAGTGCTGCGGCCTAGGGTTGTGGGGGAGTGGGTGGGCAGGCAGGAAGAGGATCCAGACCCCCTGGCAGCAGAGATGCTCCAGCCCCCAGTCCCAAGGAACAAGACTGAGGTGTGGGGGAGGGCCAATAACAGCCCTGCCTtgagTGTGAAGATGGAGGGGAAGAGTAAAGGgttgaagcagcagcagcagcaccacaAGAAGCTCCTGGCGGCCATGTTGTCCCAGGATTCCTTTGACTCCGCCCATAGCTCCGCCCCCTCACTCACCGAGGAGGAAATAGAGGATGAGGATGATGCCATGGAACTGTTGGaGGACCTAGATGACCTGCGTATGGAGGGGGTAACAGGGCTGGCCCCGTCAGGAAGTAAGTTCAGTCAGGGTCGTAGTTCCTACCTCCCAGAGCCCCAGGCCAAGGTCACACTCAACATCTGCTCAAGGTGTGCAAGGCTGCAGGGGGACAGTCTGTCAGATGCCAGTAGACCAGAAGAGGACCAGCACCATGGACCCTCCCAGCATGGATCACCTCAACATGGACCTCTCCATGGAACTTCTCATCCCCTGCTCCCAGAGCATGCTGCTGTCAACATGCCTGATGGAAATGGGCCTCGTGGACCCCCCCATCACTTACAACCTGTGCCTGATATCTCCTGTTGTTTTCCCGGGGTGGACACAGCGCCGGTACGAGACCAGGAATGCGAGAGTGTGTCTCAGGTCTCTTTCCCACGTCAGGCAGTCTGGGAGGCTGATGTGAAGGTGGTTAAaggagtaggaggagggagcTCGTCCAGGGAGCTGCTGGGACAGACGGGGGGACTGCTGCTAAGTGACTCCCTCTTCTCTAAAGAACTAGAAAACATGGGCAAACACCTCGCTGAGGTGGAGAAGGACCTGGCCAAACTGGCGGAGCAGGGGAAACTAGCCCAGCGGAGCCCCAACAGCCCCCACAGTAGTCTGCTCCTCACCCCTCTGTTCCACACCTCCCTCCCGGGGGGAACCCTCCCCAACACTCTACCCTTACCAggccagacctccagaccccccTCCAGACCCCAGTCCCCCGTCCTCAGCGCCCGCTCAGCCAAGCCCAGCTCCATAGGCTACCCCCTGGTCAGCCCCAAACTTAGCCCTCTGCTCACCCGGAAACCAACCTCCCTCACCATGACGACTGGTCACAGAACTCATTCTCCCAGCAACCCCGGCAGCAGAACTACAACTCCTAGAACCCCCAGCAGCAGGCCCATGACCCCCAACAGCCTGCTGACCTCCAGGTCGGCCATGACGGCCGTGACCCCAGGGGTTGGAGGTCATGGGGGTCATAAGGAGGTGACGTTCAGGAGGTCGAGGAGCAGACCGGTGACCCCCACCAGTCAGCCGACCCGACCCAGGCCCCTGCTCACCCCTCCTGGGCTGAGTACGACAGATAGTCTGGGCAAGGCCTCCAGCCTCAGGGCCTATCTGTCAGAGGATGAGTTCTACCAGCAGCTGCAGGCCATCAGACAGCCATGGCACATTCCCAGTGACACAGAGAGTGACCTTCTGGAACCACCTGAGCAGGACAAGTAAGGAGAGTGCATATCCACACATAGCCAACTTCTTCAGTGTGGGTGGATTATACAACTACAGTGTGGGGTACGAGATGCCAATAAGAGATCCGTGTTCTCAGGTGAGCGTCTAAACCCAAAGgCCTATAGTGAtgaagaccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451647 lncRNA upstream 215175 23445838 ~ 23451494 (+) False G1270669
TU1451646 lncRNA upstream 221090 23440149 ~ 23445579 (+) True LOC110489836
TU1451624 lncRNA upstream 261355 23403079 ~ 23405314 (+) True G1270651
TU1451524 lncRNA upstream 267548 23398124 ~ 23399121 (+) True LOC110510445
TU1451523 lncRNA upstream 267638 23398124 ~ 23399031 (+) False LOC110510445
TU1452661 lncRNA downstream 3867 23839310 ~ 23839530 (+) True G1271616
TU1452667 lncRNA downstream 8101 23843544 ~ 23843798 (+) True G1271622
TU1452762 lncRNA downstream 129322 23964765 ~ 23989432 (+) True G1271715
TU1452776 lncRNA downstream 167989 24003432 ~ 24003680 (+) True G1271728
TU1452781 lncRNA downstream 177891 24013334 ~ 24013911 (+) True G1271732
XM_036944101.1 mRNA upstream 7829 23458108 ~ 23658840 (+) False prex2
XM_036944100.1 mRNA upstream 7829 23458109 ~ 23658840 (+) True prex2
XM_021562779.2 mRNA upstream 221082 23439842 ~ 23445587 (+) False LOC110489836
XM_036944099.1 mRNA upstream 267618 23387536 ~ 23399051 (+) False LOC110510445
XM_036944081.1 mRNA upstream 297857 23350408 ~ 23368812 (+) False LOC110489828
XR_005036305.1 mRNA downstream 21970 23857413 ~ 23904392 (+) True LOC118938911
XM_036944110.1 mRNA downstream 114989 23950432 ~ 24026310 (+) False sulf1
XM_036944106.1 mRNA downstream 114991 23950434 ~ 24027801 (+) False sulf1
XM_036944108.1 mRNA downstream 114991 23950434 ~ 24027801 (+) False sulf1
XM_036944109.1 mRNA downstream 114991 23950434 ~ 24027801 (+) False sulf1
TU1451648 other upstream 216196 23445838 ~ 23450473 (+) True G1270669
TU1451627 other upstream 258667 23406660 ~ 23408002 (+) True G1270652
TU1451615 other upstream 289109 23377308 ~ 23377560 (+) True G1270643
TU1451171 other upstream 529948 23132859 ~ 23136721 (+) True LOC110489812
TU1449889 other upstream 1872416 21786221 ~ 21794253 (+) False slc12a7b
TU1452905 other downstream 410980 24246423 ~ 24250283 (+) True G1271852
TU1453311 other downstream 552969 24388412 ~ 24403661 (+) False G1272220
TU1453690 other downstream 906460 24741903 ~ 24743805 (+) True G1272573
TU1453691 other downstream 924436 24759879 ~ 24762965 (+) False chchd7
TU1453692 other downstream 924436 24759879 ~ 24762923 (+) True chchd7

Expression Profile