RNA id: XR_005036305.1


Basic Information

Item Value
RNA id XR_005036305.1
length 625
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118938911
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23857413 ~ 23904392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCATTATGGGCGGTAGGTAACCTGATCCCAGATGTGTTTGTGCTCTTACAAACtccattgctgtcattgtcaagCTAAACATTTTAGAGGAGTTGGCAAGAAAACGGAAACGGACTGGCATCAGGCAATGTGTAGTATTCAGACTTGATATCTGAGATCTCCTAACTTTAATCCCGTTGACAAAGTTTTTATGTGACAGTCAGTTGTCTCTCCTCTAAACTCTTAACACTATGGGCTTGTTTCCCAGAcatagattaagcctagtcctggactaaaaatctTTTTTTAATTGAGAATCTTTATTGATGATTATAAACTGGACGGTTCGaggcctgaatgctgattggctgaatgcTGTGGTATATcggaccgtataccacggCGACCGGCCCAGGATTCGAACAGGCGGCCTTTCGGCTACAGGTCTAACTCCTTAACTGCTGGGCTACCTACCACCCATACTCACAGAAAGTTTACCAACACGTTTGTTTAAACCTAAAAAGGTtcttcagctgcaccatcgagagcatcctgactcattgcatcaccgcctggtatggcaaatgctcggcctccgatcgcaaggcactacagagggtagtgcatacggcccagtacatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1452667 lncRNA upstream 13615 23843544 ~ 23843798 (+) True G1271622
TU1452661 lncRNA upstream 17883 23839310 ~ 23839530 (+) True G1271616
TU1451895 lncRNA upstream 52152 23804025 ~ 23805261 (+) True G1270892
TU1451884 lncRNA upstream 52690 23781257 ~ 23804723 (+) True G1270885
TU1451847 lncRNA upstream 133730 23721288 ~ 23723683 (+) True G1270849
TU1452762 lncRNA downstream 60373 23964765 ~ 23989432 (+) True G1271715
TU1452776 lncRNA downstream 99040 24003432 ~ 24003680 (+) True G1271728
TU1452781 lncRNA downstream 108942 24013334 ~ 24013911 (+) True G1271732
TU1452782 lncRNA downstream 113887 24018279 ~ 24018511 (+) True G1271733
TU1452783 lncRNA downstream 120828 24025220 ~ 24025696 (+) True G1271734
XM_036944102.1 mRNA upstream 20975 23666669 ~ 23836438 (+) False LOC110489839
XM_036944103.1 mRNA upstream 20975 23666669 ~ 23836438 (+) False LOC110489839
XM_036944104.1 mRNA upstream 20975 23666669 ~ 23836438 (+) False LOC110489839
XR_005036066.1 mRNA upstream 20975 23666669 ~ 23836438 (+) False LOC110489839
XR_005036067.1 mRNA upstream 21970 23666669 ~ 23835443 (+) False LOC110489839
XM_036944110.1 mRNA downstream 46040 23950432 ~ 24026310 (+) False sulf1
XM_036944106.1 mRNA downstream 46042 23950434 ~ 24027801 (+) False sulf1
XM_036944108.1 mRNA downstream 46042 23950434 ~ 24027801 (+) False sulf1
XM_036944109.1 mRNA downstream 46042 23950434 ~ 24027801 (+) False sulf1
XM_036944107.1 mRNA downstream 74614 23979006 ~ 24027801 (+) True sulf1
TU1451811 other upstream 162232 23666471 ~ 23695181 (+) True LOC110489839
TU1451648 other upstream 406940 23445838 ~ 23450473 (+) True G1270669
TU1451627 other upstream 449411 23406660 ~ 23408002 (+) True G1270652
TU1451615 other upstream 479853 23377308 ~ 23377560 (+) True G1270643
TU1451171 other upstream 720692 23132859 ~ 23136721 (+) True LOC110489812
TU1452905 other downstream 342031 24246423 ~ 24250283 (+) True G1271852
TU1453311 other downstream 484020 24388412 ~ 24403661 (+) False G1272220
TU1453690 other downstream 837511 24741903 ~ 24743805 (+) True G1272573
TU1453691 other downstream 855487 24759879 ~ 24762965 (+) False chchd7
TU1453692 other downstream 855487 24759879 ~ 24762923 (+) True chchd7

Expression Profile