RNA id: XM_036944108.1


Basic Information

Item Value
RNA id XM_036944108.1
length 4569
RNA type mRNA
GC content 0.53
exon number 19
gene id sulf1
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23950432 ~ 24027801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTCTCTGCTCAGGGACGTGTCTCAACAGATGGTTGGGGTTAAAGAGTGTTATCACATCGTAGAGAGGATTAGAGCCGAGAGgttgtcctcttcttcttctccttcttccagAGGAGCTGAGCTGTGtggtccacctctcctctccactactctaCCACCAATACCAGAACTCTGCATGAGaacaagaagagaagaggagacggGGAGAAAAAAAGAGATCCTTATCCTTCTTTCTCACACTCTCACTCcggcactctgctctcctgccTTCCAGTGAGAGCTCCAGTGGGTTTCCTCCCTCCGCCATGCTGCTGGTGTGTGTGTCCTGGCTGGGCCTGCTGTCCCTGGGTTGGAACCAGGGCTGTTCAGCATTCAGCACCACCAGAGCCCAGGGAGGCCTGAGGGGACGCATCCAGAGGGACCGCAGGAACATTAGGCCCAACATCATCCTCATCATAACCGATGATCAGGACACGGAGCTTGGCTCTCTTCAGGTGATGAATAAGACTCGTAAGATAATGGAAGATGGAGGCACCTCGTTCACCAATGCCTTTGTGAGCACGCCCATGTGCTGTCCGTCGCGCTCGTCCATGCTGACTGGGAAGTACGTTCACAACCACAACACCTACACCAACAACGAGAACTGTTCTTCGCCATCCTGGCAGGCCCAGCATGAACCACGCTCCTTCGCCGTCTACCTCAacaatacaggatacaggacagCGTTCTTTGGGAAGTACCTGAACGAGTACAACGGCAGCTACATCCCTCCTGGGTGGCGGGAGTGGGTGGGGCTGATCAAAAATTCCAGATTTTATAATTACACCGTCTGTCGGAACGGTTACAAGGAGAAGCACGGTGCAGAATATGCCAAGGACTATTTCACGGACCTTATCACCAACGACAGTATCAACTTCTTCCGGATGTCCAAGAAGGTTTACCCTCACCGGCCAGTGATGATGGTCCTCAGCCACGCTGCTCCCCATGGCCCAGAGGACTCAGCCCCACAGTACTCAGAGATGTTCCCCAACGCATCGCAACACATCACCCCCAGTTATAACTACGCCCCAAACATGGATAAACACTGGATCATGCAGTACACCGGCCCCATGAGGCCCATCCACATGGAATTCACTAACTTCCTACACAGGAAGAGACTACAGACGCTCATGTCAGTGGACGACTCTGTTCAGAAGGTATATGAGATGTTGGTAGAGAGTGGAGAGCTGGACAACACCTATGTAATCTATACTGCTGACCATGGCTATCACATCGGTCAGTTTGGACTGGTAAAGGGGAAGTCAATGCCCTATGACTTTGACATCCGAGTACCCTTCTTCCTCAGAGGGCCCAACGTCGAGCCTGGAGCAGTGAACACTCAACTGGTGTTGAACATTGACCTGGCTCCCACTATCCTACACATCGCTGGGCTGGACACTCCTCCAGACATGGATGGGAAGTCCATCCTCCAACTACTGGAGCATGAGAAAACTGGCAACAGATTCAAACCCAATCGGAAACCCAAAGTCTGGAGGGACACATTCCTAGTGGAGAGAGGTAAACTCCTGAGGCAGAAGGAGGATGGTGGAGGCAGTCCAACCACCCCTCACACCAACAGCCTGCCCAAGTACAAGAAGGTCAAAGAGGTGTGTCAACAGGCAGAGTTCCAGACGCCCTGCCAACAGCCTGGGCAGAAGTGGCACTGTGTGGAGGAGATCACAGGGAAGTGGCGTATCCAGAAGTGTAAGGGAGGTGGTCTGAAGGAAGGCCCCAGGAAGAGGGCCCGGAGCCTCAGGTCCCGCAGCAGCTACGACAGCCGGCAGAGGGACCCTTGCGACTGTGGCCCTGACAGCAGCCTCGACAAACCCTCCAGGTCCGACCGCCCGGGGCGCTCACACCGCCAGTTCCCACCTTCCTCTGGAGGACGAGgctACAGGCCTCGTTTCGTCCACACAAGATCCACCAGATCTCTGTCCGTGGAGTTTGAAGGGCAGATCTATGACATTGACCTTGCGGCAGACGACCAGTCGGCGGTCAGGAGACGTGTCATCAGAAAGCGCCACTATGAGCAGGAGGACCAGGAGTTGGCTCTGGAGTCAGAAGACGGGTCAGAGGAGATGCTGGCGGACGATACCAACACCGTGGGGTACCCCAACTCTGTCAAAGTCACACACAAGTGCTACATCCTGATGAATGACACCGTCCACTGTGAGAGAGAGATCTACTCTTCATCCAGAGCCTGGAAGGACCATAAGAGCTACGTGGACCAGGAGATAGAGGCCCTGCAGGACAAGATCAAGAACCTGcgagaggtcaggggtcacctGAAGAGGAGACGACCTGACGGGTGTGACTGTGGTAAGAACAGCTACTATAgcaaaggagagagaaacagagagaaggcagagaggttGAAGAACAAGAATGATCAGCTCCATCCCTTTAAGGAGGTTGCTCAGGAAGTGGATGGGAAGACCCAGCTGTTGAACGAGatcaggaggaagaagaaggagaggaaagagaggaagaggcagaagaaGGGAGATGACTGTAGTCTACCTGGTCTGACATGTTTCACTCACAGCAACGACCACTGGCAGACTGCCCCCTTTTGGAACcTTGGAGGGTTCTGTGCGTGCACCAGTTCCAACAACAACACCTACTGGTGTGTGAGAACCATCAACGAGACACACAACACCCTGTTCTGTGAGTTTGCTACGGGCTTCCTCGAGTACTTTGACCTCAACAACGACCCCTACCAGctgaCCAACGCGGTGTACTCGGTGGACAGAGAGGTGTTGAACGCCCTCCATGCTCAGCTGATGGAGATGAGGAGTTGCCAGGGACACAAGCAGTGTAACCCCCGACCCAAAGGCCTGGACACAACAGCACTCAGCCAGTCTGGGACGGACGAGCGGGTTAAGCTGCCCAACCTgacggaggaggaggtggactGGCGAGGTCTGGAGGAGCTGTATAGTAGTGTAAACCAGAGCCTGTACCAGCACAGGACTGACTACAGCCTCAGACAGGACGACTGGCACATCTTCCAGAAGGATGTAGATAATATGTTTGCACTGAGACACGTTTTAGACTCAAAACTTCAAAACAACGACGACAACCAAACCCATAAGCTTGACTTAAAGGATGACCCGGCATCGGCAACTTCCCTGGCAGAGCAGGGTTCCGGGTCTGGGGCTGGGGGGCTGGAGGAGGGCAGCGGAGGAGAAGGTACGCCCAGCCGGGACATCTGGCCAGAACCGGTCATCCTGAATCGGGCCACAGAGGGATTACCGGAGACCCCATGCACTACCCATCCTGCCCCTAgcacacccccaccaccacctcctccattaacacccacacaccccacacctcagaggtcagaggttaaagTTCAACTAGAATCTGTGAATGACCTCCCTGACGAGACTTATCCATTAGACAGACCCCCCAGAGTGGTGTCTGGGATGTCAGcaggtcagaggagaggaggggtcagaGGGGGGGAAGTGGTTGCCGGTGGTGAAGTGTGGTTGGCCCATCAGCTGGAGGAGGACTGGCTAGATGGCGAGGGGGAGGGGCTAGTCTTCAGCGGGAACGGGAACAACGGCCTGACTGAGATGGAGACGCGGCACGACGACCTGCTCCGCACCCACAACAGCCTGGagatggggctgggactggggtcTTACCCAGGCCAGGCCCAGACCCAACAGAGCAGTCTCATCcagggactggagctgggactagacaaggaggaggaagaggacataTTCCAAGGCCAGggctacctccccctctccccacagaCACTGAAGCCCAGAGTACaggcctccaccaccaccactactaccagcaCTAGGAGCCCGCCTCAGACTCAGACTGGCGCCCCACAGGGGACTGGGGTGGTAGTGCATAACCCCCAGCTCCAACAGGCACATCTACAGATAGAGGTACAGGTCGAGTCCCAAGCCCAGCTCCAGGCCCTGGACTATGAGGGTAGTGGGTCTCCCCCCCAGCCCTCTTCCAACCACACCCAGTGAGACACATACAGACAAACGCACGTGCTGGCCTGACATTGGGCGGCCCAGCCGGTCaccatagagacacagagagacacagatactGGGGGACATGGAGAGCCAAGAAGGCCAACGATGATGCCACCACCTGTCAGTCTGACTTAGAGCTGTATTATTCATGAGTATtaaagttattattattgttgatttttttttttacaggtgcTTCCATTTATTATTAGAAGAACTACAGTGTTATGTTGTTtttccaaaatatatatttagaaaAAGAAAAGCCTTAATGCAGctgaaattaataaaatatgGGAATTTTAATAAAAGTCCAAGTGGATAACACCattgttttaaatatatattttgaacaATAAAAACAGGTTTAGTCTGAAGGTTAGTGGTCATTTAGCgttaccagagaggaagaggcgaagcgagagggttTACCAGGCTGAACATCTGTCCACGTTAAGCTAATTATTAAGCAATGAGTGCCGAATTTTGTCAAGATAAAAATGTAAAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1452667 lncRNA upstream 106636 23843544 ~ 23843798 (+) True G1271622
TU1452661 lncRNA upstream 110904 23839310 ~ 23839530 (+) True G1271616
TU1451895 lncRNA upstream 145173 23804025 ~ 23805261 (+) True G1270892
TU1451884 lncRNA upstream 145711 23781257 ~ 23804723 (+) True G1270885
TU1451847 lncRNA upstream 226751 23721288 ~ 23723683 (+) True G1270849
TU1452694 lncRNA downstream 584 24028385 ~ 24028709 (+) True G1271649
TU1452693 lncRNA downstream 1558 24029359 ~ 24029528 (+) True G1271648
TU1452834 lncRNA downstream 77834 24105635 ~ 24106464 (+) True G1271784
TU1452863 lncRNA downstream 164569 24192370 ~ 24192909 (+) True si:ch211-37e10.2
TU1452880 lncRNA downstream 184618 24212419 ~ 24212672 (+) True G1271829
XR_005036305.1 mRNA upstream 46042 23857413 ~ 23904392 (+) True LOC118938911
XM_036944103.1 mRNA upstream 113996 23666669 ~ 23836438 (+) False LOC110489839
XM_021562786.2 mRNA downstream 158665 24186466 ~ 24192913 (+) False si:ch211-37e10.2
XM_021562787.2 mRNA downstream 185865 24213666 ~ 24229710 (+) True nle1
XM_021562797.2 mRNA downstream 576701 24604502 ~ 24618190 (+) False prtfdc1a
XM_021562799.2 mRNA downstream 576701 24604502 ~ 24618190 (+) False prtfdc1a
XM_036944119.1 mRNA downstream 576701 24604502 ~ 24618190 (+) False prtfdc1a
TU1451811 other upstream 255253 23666471 ~ 23695181 (+) True LOC110489839
TU1451648 other upstream 499961 23445838 ~ 23450473 (+) True G1270669
TU1451627 other upstream 542432 23406660 ~ 23408002 (+) True G1270652
TU1451615 other upstream 572874 23377308 ~ 23377560 (+) True G1270643
TU1451171 other upstream 813713 23132859 ~ 23136721 (+) True LOC110489812
TU1452905 other downstream 218622 24246423 ~ 24250283 (+) True G1271852
TU1453311 other downstream 360611 24388412 ~ 24403661 (+) False G1272220
TU1453690 other downstream 714102 24741903 ~ 24743805 (+) True G1272573
TU1453691 other downstream 732078 24759879 ~ 24762965 (+) False chchd7
TU1453692 other downstream 732078 24759879 ~ 24762923 (+) True chchd7

Expression Profile