RNA id: TU1453692


Basic Information

Item Value
RNA id TU1453692
length 783
RNA type TUCP
GC content 0.44
exon number 4
gene id chchd7
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 24759852 ~ 24762965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACATCGTAGTGCGATGTTATTAAATGACGTTCGAACTGACATGAGGGAATAGATGCACAAGTATTCAACCAATATTTCCACATAACATCAAGAAAACGACGCAGCAAGAAATGGACAAAAACGTGCGCAAGCTTCGAAGTAAAGATATAAACCCATGCATTGAAGAAAGTGATGGCTCTCAGAAATGTTTGGATGCCAATAACTATGATAAGAGCATGTGTTCTGCATATTTTCTGAGATACAAAAACTGCAGAAAATACTGGCACAACCTCATGGTGAATAGGAGACGAGACGGCGTGAAGCCTGACATGCCCACTGCTGAGGAGCGCCAGGAGATACTAGCTGCCATTGGAGGCAAGCCCTATTGAGGCAGTGGCAAGACCAGTAGAAGGAAACACTGGAGTGGGGTGTAGACCATACTTTCCAGTAAAGCTCTGGGACAGACACCTTCTTTATGAAGGTCTGAGAGCTCCTCCACACACCTCGCCATTATGATGCTGACCGTGCCCCAAGAGGTGCCTCTGCCGCACTGTGTGCTGCTTGCCACTAAAGGTTGATGGTGGCGTTGAAACCTGTCAAATACCGATATCAATGATCAAATCACTACAGTATGCCTAATGCTGAAATCTGGCAATGAATGTGCATAGCTGGTTAGTATGAGTGGAGCTATATGGAAAAGCACTTCAAGTTGCCTTGATGAATCAAGTGTTTTAATAATCTTTAAAGAAAGAACTGGAAAGACTATGGACTTACTCACCTTTATTTGCAAGCCTTGCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1453679 lncRNA upstream 16074 24741903 ~ 24743805 (+) False G1272573
TU1453687 lncRNA upstream 16074 24741903 ~ 24743805 (+) False G1272573
TU1453682 lncRNA upstream 16873 24741903 ~ 24743006 (+) False G1272573
TU1453605 lncRNA upstream 168697 24590898 ~ 24591182 (+) True G1272502
TU1453409 lncRNA upstream 211908 24547742 ~ 24547971 (+) True G1272317
TU1453772 lncRNA downstream 72745 24835668 ~ 24836170 (+) True G1272642
TU1453786 lncRNA downstream 103338 24866261 ~ 24866567 (+) True G1272656
TU1453789 lncRNA downstream 108929 24871852 ~ 24876716 (+) False LOC110489866
TU1453794 lncRNA downstream 108929 24871852 ~ 24876716 (+) True LOC110489866
TU1453829 lncRNA downstream 137795 24900718 ~ 24901029 (+) True G1272686
XM_036944122.1 mRNA upstream 28386 24638792 ~ 24731493 (+) False LOC110489855
XM_021562810.2 mRNA downstream 63685 24826608 ~ 24829935 (+) True LOC110489862
XM_021562811.2 mRNA downstream 73684 24836607 ~ 24840963 (+) True LOC110489863
XM_036944131.1 mRNA downstream 106683 24869606 ~ 24876724 (+) False LOC110489866
XM_036944132.1 mRNA downstream 106683 24869606 ~ 24876724 (+) False LOC110489866
XM_021562818.2 mRNA downstream 106948 24869871 ~ 24876724 (+) False LOC110489866
TU1453690 other upstream 16074 24741903 ~ 24743805 (+) True G1272573
TU1453311 other upstream 356218 24388412 ~ 24403661 (+) False G1272220
TU1452905 other upstream 509596 24246423 ~ 24250283 (+) True G1271852
TU1451811 other upstream 1064698 23666471 ~ 23695181 (+) True LOC110489839
TU1451648 other upstream 1309406 23445838 ~ 23450473 (+) True G1270669
TU1453791 other downstream 108929 24871852 ~ 24876716 (+) False LOC110489866
TU1453814 other downstream 197009 24959932 ~ 24963041 (+) True G1272672
TU1453808 other downstream 205486 24968409 ~ 24974713 (+) True rbis
TU1456051 other downstream 1601355 26364278 ~ 26365146 (+) True G1274765
TU1456117 other downstream 1677088 26440011 ~ 26442387 (+) True G1274830

Expression Profile