RNA id: TU1453789


Basic Information

Item Value
RNA id TU1453789
length 2638
lncRNA type read_through
GC content 0.41
exon number 6
gene id LOC110489866
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 24869606 ~ 24876724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGCAACAGCGGAGATGGGTAACAACTGCGCTCTCGTGGGGGAATCCCTTAACGTAAAAACTCCTCTGTAGCTCTGTTGGTacagcatggcacttgcaacgccatGATAGTGGGTTAAATTCTCAGGCCACCCGTGTGCACGCATGAcgaagtcgctttggataaaagtgtctgctaaatggcatagaTTAAGGCCCTTATTCACAACGACATACAATGTTTCAGATTAGTTATACTAAGTAAATAACCTACAGACAGGTCTGACGATGAAGTACTCACGAGTGATTTAGAAACTACTTGGAGGGGTGCCGATATTTTTTATCTGTAATACATTTATGGCCACGTGGCTAAAAGTAATTATATTGGTAGGATACTCATGGCCACTATTGATAGGGGAAGGTGGGGGTTGCGAATACACAATAGACCAGACTACATGCAACCAAATAGGCCTACCCCAGGTGGTTCCTGGGCACATGTATTTCACACAAACCTATACAGTTGTTAAAAGCATGAAATGTCAGgagtgcaactttcactggggatgggTGGGACATGCCCCACATtgtgaaattgtatttttgtcaCTCCCAGTTTtgtcattggaatgtgatacaaaacaaggcaacggtgtgctttaggaccatgctgACACCTCCGAGCGGtagggtaggctgtttggagtgtttatctgactggataaaaaaatacataataatTATGTCCCCctcacttctaaaaccaaagttgcgcctcTGTGAAATGATGTGATGCAAATGAACCATTACTGGCCAACACAGACATCAGAGattatggagaaaaaaaaagtgagACCCGATCCTAAGTAATTCAAATGTAACAGCTTTAATTTTTATTCTGTCTATTCTGCAATGTAAGATGACACAATTACAGTCTATCTCCTCAACATATGCTAACTGGTGAAGCGCCTAGGCTACAACACAATAAGATCAACTCAACTGCAATTAGACTACATACCTCCGAACGCTCGCTTTCTCTTCTGAAAACTTACATCTGTGACTAAAAGCTCCAAATAAGGGCATAAACGTCAGAGTTGGCCACACAAGTGCGCAGTTGTTACCCATTTTAATTTCCACTGTTGCTGTCAGCCACATAAAATAATCTCAATAGTTTTAGGTGGAGAAGTTCACATTTCCTGACTCAAAACCGATAGTACTTTTGATTTAAAAAATTGCTCATTCGGCCATACACTTTCAATAAAACAATTTGTCCACAATTTCCAGATTTCTCAATCACTGACTGACAACAGAGCAGAGCTAGCAATGCACAAAAGCTCGTCACCAGTCTGACCCGTTTTTGCAGCTTTCCAGTTCTAGACTGCAGGGAAAGAAGGCAAACTCCACTTAACTAGTTTCAATGTAAGGAATCACTTGGGACATTTTGGATATTAGGTTAACCTCCCCTTGAAATACTATATTATACCTCATACAACTGCTGTTGGAAGCTAGCCTGATTGTCCTTGAAGACTATGGAATTGTAAGCTATTGGCTTTCTTTCTAGTGTGAGTCTGCTGTTGATGTCGGCCATCAACCTCCCCCTCTATGACCCTCAGTTTGACCCTGGTGGTTACATGTGGGCCCTGGCACATCTCTTCTGTGTTGGCAAGTCTAGCTGGAATAAAACCAGCTGTGGGATTGTCATATGTTTAAAGCGTATAGCATATAAATATAAATCGCTGAATACACTTAGCAACACAATATTAATACAGAAATACATCAATTTCAGGTGCCTATAGAGTGTTCCAGACACACTTCAAGTCCAGTCATTTGAGTGACCTTGAACAACAATACATCAACTACTTGTTCAGTGTGTTGCTGTTGGCCTTTGCTGCACACCCTACTGGTGACCTATTTGGTGCCTTGGAATTCCCTTTCCTCCTGTCCCCAAGATTTCACGGTGGCTGTTGTGCCAGTGCCTTGTTGGGCTTTTTCTTGCTGTTGGCATCAGTCAAACTAAAGAGTGGTTTACCCCTTGAGCACTGCGGGGTCTGGCTCTTTTTGTCCAAGGTAATGAAAGTCAGAACTCAACTTAATGATCAATGGTAAACATATCTTTATTTCCCACAAGattattttctttatttgttaCCTTCTACCACCATCTCCCCTCTACAGAAAAAGGTATTAGTAATTGGCAGAAAACCTGCCGTAATAACCTAAGTAAACGATTGTCATAAAACCGACAGTTAAATAGTAAATTCATTCTGTTTTAGATTTCCTTCAAGGACAGTGGATGTGCCAGTTACATATCCGTGTCTTGCTCTACCCTGTCTAGGTGTTTGCCACATGCCTATCCCCACTTGTTTTTAACATTGAAGTTAACACGCCATCTTTCTGCTGTGTTTTCTTCAGCCATGTTGGAGAAGCCCTGCTGGTGTACTCTGAAAGTACTTCCCAAGTGCGATGAGAGCTTTGCGAAAGAAACTACTTCTACCTCACTAAATGTTTCAACGAGTTTACTTGCACTCAATTTCCCAGTGATATTTTTTTGCTTTTGGAACAAGTATCACAAGAATGTATGCTTCAATTGAGATTATTTTACATTTACTTTGCCTTTTCTACAACTTGCTGTAAAGCAGAAATAAAGATTCTATATATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1453786 lncRNA upstream 5285 24866261 ~ 24866567 (+) True G1272656
TU1453772 lncRNA upstream 35682 24835668 ~ 24836170 (+) True G1272642
TU1453688 lncRNA upstream 83956 24741879 ~ 24787896 (+) False G1272573
TU1453829 lncRNA downstream 24002 24900718 ~ 24901029 (+) True G1272686
TU1453831 lncRNA downstream 25992 24902708 ~ 24902992 (+) True G1272688
TU1453837 lncRNA downstream 34133 24910849 ~ 24911088 (+) True G1272694
TU1453841 lncRNA downstream 40313 24917029 ~ 24917297 (+) True G1272698
TU1453844 lncRNA downstream 42466 24919182 ~ 24919401 (+) True G1272701
XM_021562811.2 mRNA upstream 30889 24836607 ~ 24840963 (+) True LOC110489863
XM_021562810.2 mRNA upstream 41917 24826608 ~ 24829935 (+) True LOC110489862
XM_021562206.2 mRNA upstream 108889 24759852 ~ 24762963 (+) False chchd7
XM_021562819.2 mRNA downstream 91588 24968304 ~ 24976522 (+) False rbis
XM_036944142.1 mRNA downstream 776022 25652738 ~ 25662668 (+) False zgc:111976
XM_021562829.2 mRNA downstream 776093 25652809 ~ 25662668 (+) False zgc:111976
XM_021562827.2 mRNA downstream 776094 25652810 ~ 25662668 (+) False zgc:111976
XM_036944139.1 mRNA downstream 776094 25652810 ~ 25662668 (+) False zgc:111976
TU1453691 other upstream 108887 24759879 ~ 24762965 (+) False chchd7
TU1453692 other upstream 108929 24759879 ~ 24762923 (+) True chchd7
TU1453690 other upstream 128047 24741903 ~ 24743805 (+) True G1272573
TU1453311 other upstream 468191 24388412 ~ 24403661 (+) False G1272220
TU1452905 other upstream 621569 24246423 ~ 24250283 (+) True G1271852
TU1453814 other downstream 83216 24959932 ~ 24963041 (+) True G1272672
TU1453808 other downstream 91693 24968409 ~ 24974713 (+) True rbis
TU1456051 other downstream 1487562 26364278 ~ 26365146 (+) True G1274765
TU1456117 other downstream 1563295 26440011 ~ 26442387 (+) True G1274830
TU1456566 other downstream 2084075 26960791 ~ 26962226 (+) True kif9

Expression Profile