RNA id: XM_021562840.2


Basic Information

Item Value
RNA id XM_021562840.2
length 4538
RNA type mRNA
GC content 0.48
exon number 12
gene id cdh19
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26092332 ~ 26114459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTCTTTCAAGGGAagtttgagaaagagagaaaaagggaagaaaagaagaagaagaaaggggGAGGTCGTCAGTGGAAGGGATTACGCATTGTGAGAACCATGTCCATTTGCTGCTACTATTATTGGGTCTGAAAAGCAGTATCTGCAGTACCAGGGCCCTTAGTTAACCAGACTGTGTGTTTTCTTCCACACCATGATGATCTCTGTTGGTAGCAGCTGTTGAAGAGTGGCTTAAAGAGAGAACAATCACGCATGAAGAATGACTGTCTACAGCAACAGGCCAACAGCAGGGTGGCCAGCCACCTCTCTGAGGTCCTCGCcatatcactgtgtctctctgATGCTCAGAGGAACCTTTTTAATGAACCAGTGACATCTGTACCTCTGTGCACTAACCACGGGGAGAGGCTCAGAAAATGGATCAGCGGACTATCACAATGCGGTGTCCTTGTCTGCTGGACTTAGTTATTATCCTGTCCTTGACATCATGCTGCATGTTGAGTGAGGCGAGAGCTCCACACAGTCTGGAGCCCGACCACCAGCTTGGCCAGGGGTCTCCCACCACAGCTCTACACCAGAGACTCAGACGAGGCTGGATCTGGAAACAGATTTTTGTCCCAGAGGAGGACCCCACTCCAAGCGTGATTGGCCAGCTAAAATCAGACTACGACAGAGGGGATTTCTCTATCAAGTATATACTGTCGGGGGAAGGTGCAGGGGAGATGTTTGAGATTAATGAATATTCAGGAGAGATCCGTACATTGCAGAAGCTGGACCGCGAAGAGAAGGCCTTCTACCTCCTGCAGGCTCATGCCCTTGCTCGGAAGTCCAACGAACCCGTGGAGCCCCAGTCAGAGTTCATCATCAAGGTCCAAGACATCAACGACAACATCCCCCAGTTCCAGAACGAGCCCTATGTCTCCAGCATCCCTGAGATGTGTCCCATGGGGACTATCGTGGCCCAGGTGACAGCTACAGATGCTGACGATCCCCTGTTCGGAAACAATGCCAAGCTCATCTACTCCATCCTACAGGGGGAGCCCTACTTCTCTGTGGAGCCCAAGACAGGCATCATCATGACCTCGATGGCCAACATGGACAGGGAGGCTAGGGACCAGTATCTGGTGGTGGTGCAGGTGAAGGATATGCTGGGACTGAGCGGTGGTTACTCTGCTTCCACCACTGTCACCATCAGCCTCACGGACGTCAATGACAACGGACCCACCTTCCAGCACAACCTTTACACCTTTGCTGTTCTGGAGTCTGCTGCGGTGGGCACAACCGTGGGCAGGATCATGGCAGACGATGGTGATGTGGGCATCAACGCCAGGATGAACTACAGTCTAGAGGACCTAGAGGAGAGCGCCACCTTCAAAATCCAAACGGATCCAGTCACACAGGAAGGAGTGGTCCTCCTGGCCAAGcCTCTGGACTATGAGAGCAAGCGACGGTTCGTAATGTCTGCGAAGGCTGTCAACGATCACATAGACACCCGCTTTCTGAGCTACAACGAGTTTCAGGACAGGACGACCCTAAAGATCGTCGTCGAGGACGTGGATGAGCCCCCTATCTTCATGGCACCCGATTATGAGTGGAAGGTTCTGGAAAATATGGTGGCGGGGACCGTGGTTGGTACCGTTAGCGCCAGAGACACTGATGCAATCAACAACCCAATCAGATATTCCATTGACAAAAGCAGTGATATCACAAAAGCTTTCAAAATAGACCCAAACAATGGGACTGTAACTGTTGCGAAACCTTTGGACCGTGAGGAAGCAGCCTGGCACAATCTAACCATAAATGCCAAGGAAACAAAGCAGAACCATCTATCCTCATCTGTGGTGGTGTTCATCAAAGTGCTGGACATAAACGACAATGCGCCAATGCTTGCCAGAGAGTACCAGCCATATATCTGTGAGGGCACACAGTCAGGAGAGCTCATCCAGCTGATCAACGCTGTGGATCTGGACGACCCTGTGGAGGGACACCACTTCTACTTCTCCATGGTCCCTGACAAGAACATCAACCCTAATTTCACAATCAGGGACAACCAAGACAACAGTGCTAGCATCCTGGCACGGCGGAGCTCATTCACCCGTAGGGACCGTGCCCACTACCTGCTGCCCATGGTGGTGGCGGACAGTGGCTCCCCAGCCCTCTCCAGTACCAGTACCCTGACCATCAGCGTATGCAGCTGTCAGCCCGCCGGACACTGCCCCACAGGCGGGGTGGAGGCCCTGGCCATCTCTATTGGGGTCAGCCTACAGACCCTGCTTGGCTTCCTGGTCTGCCTGGCAACACTCACAGTGCTGGGCATTGTAATGCTGATGCTGAGGAGACACCGGAGGAAACAGCTGGAGGGGCTGGGGAGAgcggagaaggagaaggagctgGAGCTGCCTAAGGGGGTCTCAGAGAAGGTGCTGCACTACGGAGAAATAGGAGGCGGAGGAGGGGGTGACCTGGGGGGATTCTGTCAGCCTGCTGTCCCCCTTCGTCCCCACCCCCGCAGGAGGGACAGGAAGCTCCGCAGAGAGGAGGTGGCAGCCAGTATCAGAATGTCGATGTCTCTCCGCCACTCCCTCCTCATCGGCCCCGAGGACGATGTCTTTAAACAGTTCATCATGGACAGGCTAAATGAAGCAGATCAGGACCCCTACGTGCCGCCATTTGACTGCCTGAAGACCTACGCCTTCGAGGGCACAGGGTCGCCCACGGGGTCCATTAGCTCCCTAGAGTCATGGGACTTTGTGGATGCTGACCAATGTCCCCGGGACCCCGGATCACGCCTTGTCAGACTGACTCTCTGGCATGGGGGAGCGGAAGAGGAGACAACCTTCTGAACGGCTAACAttggttttacatttttttatttaattaatttaacgTAATAACATATATAATAGTACAGCACATccctgaactcaattttgacaTCCTGATGGAAGAGACAAATAAGTTCCTGTTTTCTTCCCCCGTATGGTTGAAAACAGTGGAGCTAGCTGTAATAAATATTATCAGTGTTATGACAGTTATATGTTTTTGTTGAACAGGCAGTTTCTTGATATTTTTTTAACAGTATTTAAATCAACATAACTTTCTATACGTGACCTCATTCTGCATTAGTTCTAAAGATGGGTAACACATTCTAGTATTTGAAccttcatgacagtgtcataagCGCATCATAAGTTTCTTGACACATGCCAGAACTTTCTTGGCAGATGAATTAGATAGGACCTGTAGCTACACAGCCAATTCTCCAGTGTGAGAAAAACCAAATGAACACTGAGAGTGTTACATCAACACTTAAAGTGGTCAGTCTGTGGAACAGTGTTAAAATaacacactgcttagtgtaaaTCCTTATTCCAATATTTCCCAGGGTGCCTTGTCTTTCGAGTAAATTGTatagttaccacccatgactgtatttgttagtgacagagacatggttgttgtatTCATCCATTTTTGGTCCTATAGGCATCCAAGTGACATCCTATGCAAATATGTTATAAAAAGTTATCTTGAACACAATAGCATACATATAtcataaggccttattttgagaGTTTCACCCTAATACAAGTGCCTGAAAGTCCTACACATCGCTTTAAACCAAAACcacgcccatcattatcatattgtttgtttcaatatctgtttgtggatgtacattgattgattgattaattaattaatcttatgctactcaAATATGAAACCACAAacattttctaaactaatccaatatgTTACTTGGGCTTATTGCACCCCTAGGGAGTGTCATGGCTTAGTTTTTCCCAACCAGTTATTCTTAATCCATTTTGAGGGTGACAAGAAAATGCAACAGTTGGATATCCCCacactggctggattccaataggaattacacacaCTTTGCAAGCcaacataatgtgacttgcatacctaatgtggcctgtaaaccatgagTTCCAGGCCATTGCATTACACACTCATAAAAGGTTGTCACTGTAGTTCAagagtgtcaaactcattccatggagagcctagtgtctgcaggtttttctTTTTTCCTCTCAATAAAGCCCTACACAACCAAgtgtggggagttccttactaattagtgaccttaattcatcaagtacaagggaggagcgaaaacccacagacaccGAGTTTGTACCCTGTAAGGCAGAACTCAGTatcggtagcccctgtatatagccttgttattgttagtttattgtgttccttttttaaaaactttttttacttgagtttatttagtaaatattttatcaactctatttcttgaactgtttaaaaaaaaatagaataaaatacatttacccctttttcttcccattttgtggtatccaattggtagttacagtcttgtcttatCACTCCAAGTCCCATACGGACACaagagaggcaaaggtcaagagccgtgcgtcctccaaaacacgacccaaccaagccacactgctttttGATAtaatgcccacttaacctggaagccagccacaccaatgtgtctgaggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1455834 lncRNA downstream 1895 26090043 ~ 26090437 (-) False G1274561
TU1455833 lncRNA downstream 1895 26090224 ~ 26090437 (-) True G1274561
TU1455816 lncRNA downstream 26100 26065954 ~ 26066232 (-) True G1274548
TU1455799 lncRNA downstream 43733 26046248 ~ 26048599 (-) True G1274532
TU1455800 lncRNA downstream 43882 26046058 ~ 26048450 (-) False G1274532
TU1455842 lncRNA upstream 415 26114874 ~ 26115075 (-) True G1274568
TU1455871 lncRNA upstream 56711 26171170 ~ 26177357 (-) True G1274595
TU1455873 lncRNA upstream 58411 26172870 ~ 26179247 (-) True G1274596
TU1455934 lncRNA upstream 127003 26241462 ~ 26241722 (-) True G1274648
TU1455935 lncRNA upstream 128092 26242551 ~ 26242767 (-) True G1274649
XM_021562837.2 mRNA downstream 291080 25786208 ~ 25801252 (-) True LOC110489880
XM_021562835.2 mRNA downstream 291083 25786208 ~ 25801249 (-) False LOC110489880
XM_021562833.2 mRNA downstream 317391 25770924 ~ 25774941 (-) False LOC110489878
XM_036944144.1 mRNA downstream 317391 25770924 ~ 25774941 (-) True LOC110489878
XM_036944145.1 mRNA downstream 317392 25770924 ~ 25774940 (-) False LOC110489878
trnaa-ugc-65 mRNA upstream 10282 26124741 ~ 26124814 (-) True trnaa-ugc-65
XM_021562841.2 mRNA upstream 132683 26247142 ~ 26252430 (-) False LOC110489883
XM_036944148.1 mRNA upstream 325536 26439995 ~ 26506670 (-) False LOC110489884
XM_021562842.2 mRNA upstream 325536 26439995 ~ 26506930 (-) True LOC110489884
XM_021562844.2 mRNA upstream 399220 26513679 ~ 26528614 (-) False pxdc1b
TU1455797 other downstream 43808 26046248 ~ 26048524 (-) False G1274532
TU1455798 other downstream 43864 26046248 ~ 26048468 (-) False G1274532
TU1452453 other downstream 2363393 23713355 ~ 23728939 (-) False G1271421
TU1452454 other downstream 2363393 23713355 ~ 23728939 (-) True G1271421
TU1452449 other downstream 2374873 23713355 ~ 23717459 (-) False G1271421
TU1456313 other upstream 397066 26511525 ~ 26512075 (-) True G1275015
TU1456314 other upstream 440509 26554968 ~ 26562033 (-) True G1275016
TU1456348 other upstream 455819 26570278 ~ 26571408 (-) True LOC110489888
TU1456686 other upstream 619754 26734213 ~ 26743607 (-) False LOC110489892
TU1456762 other upstream 722861 26837320 ~ 26841026 (-) True G1275434

Expression Profile