RNA id: XM_021562841.2


Basic Information

Item Value
RNA id XM_021562841.2
length 5289
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110489883
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26247142 ~ 26252430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTGTAATACTGTAAGTAGGACGGAGACATCAGACGCAGCAAGATACATACATGTTCAACCGCAATTGTTGTGTGATGCAGTATATATGCCGGAGTGGAGAAAGCGAGCGCAAAGCAGCTGATTAGGCTGCAAGGATTTTCCAGCCTGAACGTTTGTCTATTTTTgggaatgtatttttttttttattgacaatGTTATGTCTCTTTCTTTGAATACTTGGTTGGCAGTGACGACAACTTTCCCTTTTTAACTAGCCTACTTAATCTAACGTTCGTTGGTTTGGGAAAGAAGACAAACTGCGAATAGGGGAAAATACATAATTTTAGAATGGAAAACGACTAAACCTTGGATTGGGACAGTACATCATCGCGACAGCTCGCAATGTTAAATGCGGAAATGCGCTATTTTCTTTGGTTTGTGGATATTTCAGCTCGATCGAGGAGAATAAAAAGCCTTTGGGTGTCTGTGATTGGACCGGACACGGACTGGGGCTGACTGATGTTTTTCCAggaggaaatgtttttttggggagaGATGAATACGAGTTTGCTGCTGCTCGCAGCAGGAGAGATGCCAGTCACTCCATGCGCCACACTCCAGTGAGGCTGGACAACGTGCCGGCAAAAACGGAAAAGATTCATGGATAATTCTATGTTTAATTTTTCTAAAATATTTATGTAAAATTGTTGTTTGATTGTACTCTTATTTTATGGGTTAGAACAGATGTCCACACCTCCACAACTTTATCTGTCTGCTGCGTTTTCAAACCTTGCCAAGTGGAGATGGACATTGTGCGTTTGTGTACGGTATTGGACTGGAGTAGCCTATACAGTAGGCAGAACATTAGTGCTGTCAAGCTCTGGCCTCCTGGCAATTATTGACGCTGACTGGTATTGTAGAATGCATGCTATTTTATTGTGAAATAATATAGTCTgtcgttttaaaaaaaaatagaatgtGAGATTGAACTGTCAGAAAACACATCTCATATATATTTGAATATGTCTCCAAAATACATTTCTGAAGTTTTTGAAACATACTTAAATTTGCCATTCAGCTTCAAAAAAGATATGATAAtataaacaacacaacaacaaaatgtcTTGGACCATGGCAAAAAAATGGATAGGGTGCTATATATTTTTACTGGCACTCTTGGCAGTGGGAATGGCCTTTTCGGGTGTATTCAATGCGTccgaaaaatatatttttacggATGATTTGGTGCCGCTCAAACTCACCCAGGGTAAAGCATCAGAGCATCGGAAACTTCAATCTACCGATTCTCATCCCAACCTGTATTTCAACCAAGTTGATGTACAGCTTATGAGGCAAAGATCGTCCAGCACACACAGCCACATTTTCAAAGTAATCAGAGCAGCGGTCCTGACCATGCTGTCCAATGTGCCCCTTTACATGCCCCCTGCAAAACATGAGGAGTTTACTAGCAAGTGGAATGAGATTTACGGGAACAACCTACCCCCCCTTGCTCTGTATTGCCTGCTGTGCCCAGAGGATTCAGGTGCCCTGCAGTTTCTCATTAAGTTTATGGATAGAATGGCAAATTACCCGGACTGGAAGGTGACCAGTGCTCCCAATGATGAGGTGCCCTTGGCACACTCACTTACTGGGTTTGCCACCGCATATGACTTTATTTACTCGTTCCTGGACGAGCAACGACGGGATGTTTACCTCAAGAGAATTCGCTCTGAGACAGAGGAGCTGTATGAAACATCTAAGTATAGGGGTTGGGGGAAGCAGTATCTCCAAAATCATCAAACCACTAACATATTAGCCATCTTGACTGGGGCTATTGTGGTCGGCGCCCATGATGACCCAGAAACAATGGTTTGGAAACAGGTGTCAGTCAATTATATGGAGAAGACCATGTTTCTCCTAAACCACGTTGTAGACGGGTCACTGGATGAGGGCGTGGCATACGGGAGCTATACAGCCAAGTCGATCACTCAGTATGTTTTCTTAGCGCAACGTCATTTCAACATtgacaacacacagaacaactgGCTGCGGGAACACTTCTGGTTCTACTATGCCACTCTTCTGCCCGGCTTTCAGAGGACTGTGGGCATAGCCGACTCCAACTACAACTGGTTCTACGGCCCAGAGAGCCAGCTGGTGTTCCTAGACACATTTGTTATACGAAACGGCACTGGGAACTGGCTAGCCCAGCAGATTAGAAAGCACAGGCCCAAAGACGGTCCCATGGGTCAGTCCTCTGCCCAGCGCTGGACTACCCTACACACTGAGTACATCTGGTACAATGCCCATCTCACTGCACAACCTCCCCATGGCTTTGGTAAAGCCAGGATGCATATTTTCTCCAACTGGGGTGTGGTGACGTACGGAGCCGGGCTGCCCAACGGTCAGGGAAACACATTTGTCTCCTTTAAATCTGGGAAGCTGGGTGGCCGTGCCGTGTATGACATCGTTCATGCAAAGCCCTATTCATGGCTGGACGGCTGGAATAGCTTCAACCCAGGCCACGAGCACCCGGACCAAAACTCCTTCACTTTTGCCCCTAACGGACAGGTATTTGTGTCTGAAGCACTTTACGGACCTAAGTACAGTTATCTGAACAATGTGCTGGTGTTCGGCCCCTCTCCCAGCAGCCAGTGTAACGCTCCATGGGAGGGCCAGCTGGGGGAGTGTGCTAAATGGCTGCGCTGGACAGATGAAGGGGTAGGGGATGCTGCTGGGGAGCTGATCGCTGCCTCctcccatagagacactatgttTGTAAGTGGGGAGGCAGCCCCAGCTTACTCTCCTGCCATGCGGCTGAGGAGTGTCTACAGGGCCCTTGTGCTGCTCAACTCCCAGACCTTGCTAGTACTGGACCATGTTGAGAAGCTGGACGATTCGCCCATCACCTCGCAAAGTGCGTTCTTCCACAACCTCGACATTGACTTCAAATATGTCCCCTATAAATTCATGGACAAGTACAATGGGGCGTTGATGGATGTGTGGGATGCTCATTATAAAATGTTCTGGTTTGACAGTCAGGGTCTCAGCCCAGATACTAGGATACAGGAGGCCGAGCAGGCTGCGGAGTTCAAAAAGAGGTGGACACAGTATGTTAATGTCACTTTCCCCATGAGGGCCACAGTAAGCCGAGTGGCCTATGTGATGCATGGACCTTATGTCAAAGTGTCCAACTGTCGATTTCTGGACAGTAGCAAAAATGGTGTCAGACTATCTCTAGTTATAAACAACACAGAGAAAATAGTTTCAGTTGTTACAAACTATAAAGACATAGGAACAAGATTAAGTTATTTAGGATTTGGGGGTTATGCCAAAGTGGAAGACAGACATCAGATCATTCGATATGGCCTGGGGACTCAACTGGTTCCGAAACAAAACACAGTGGACAATCAGCTGTTTGATTTTGGATTCACAGTCAATGTGATAGCGGGGGTGATACTTTGTGTTGCTATTGTTTTTTTGACCCTGCAGAGAAAGTTCTATGTGTGCTTCAGTAGACTGATGCGCTATGCTCTGTTCTCGGTGCTCATACTGTGGATAGCtgcgttgttgtttgtgtcaaacACCTGCGATCAACTCCTATGTGGGGTCAAATGGAAAGGTGTCAGCACTGACCCAGAGGTCAGCAAACAAATCAGACTTTATGATCAACATCGCTTTGCCCTGCCAACCGTTGTCATAACGACCCTGCCTGGCTCAGGATCTGAAATACTTAAGAACCTTTTTGACAACAGCTCCGACTTTGTTTACATTCGGGTCCCCACGGAGCATGTAGACATTCCAGAGACCGAGTTCGAATTTGACTCGCTGGTTGATGCCTGTGAGTGGTTCAGAACGGACGCCCTGCGCGGACGCTTTAAAATCATCCAGGGCTGGCTGCACTCTCTGGTCCACAACACCAAGCTGCACTTGCAGAACATCCAGCTAGTGGAGAGTAGCAGGGCCAAGCTGCCCCAGAGAGCCCCAGGCCCCGGCAGTGACAGGAGGAAGAGGACCAGGAGGAAGGAGCCTGCCGCCGAGCTGAGGGGCAAGATGAGGGGCAGCCTTGATCGGGATGCTGAGTACGTCAGGGAGATGAGGCGCCACGTCAGTGAGTACCCCAATGCCCGTGTGGTCCTCAACATGAGGAGTGGAAGCTGGGGGCTCAAACTCCCCTTCCTTCAGGAGGTGGTGGGCACGTCCCTGAGGACCATCAATGTAGTCAGAGACCCCCGGGCGTGGATCTATCTCATGCTCTATAACAGTAAACCCAGCTTTTACTCCCTTAAAAACATTCCTCAACACCTGTCGCTGATATTCAAGGAGGACGGTAACAGTAGCAGTACCAGGGACAGGTGCCCAGTCTCAGCCCCTGAGTTCAGAATGATCCGGAGGCTCTTGTCCCATTCGGAGGCCAGCGCCGTCCTCCTGCTGGCTCACCTGTGGCTGGCACACACTGCTGCAGTGCTCCGGGTCAGTGGGAGCCTCCAGGCAGAGGCCTACCTCCAGGTGAGGTTTGAGGACATAGTCACTTTCCCCCAGGAGACAGCTGAAAGGATCCACAGGTTCCTGGGGGTGCCGGTCACACCGGCGGCCCTCAACCAGCTCATGTTCACCACCTCCACAAACTTGTACAACCTGATGTACGAGGGGGACATATCACCAGCCAACATTAACATATGGAGGCAGAACATGCCTCgcaaggacatcagactgatagAGGACACATGTGGGGTGGTCATGAAAAGACTTGGGTACTCCAGGTTTATCAGCTAGTTAATGTTACTGCTGCAGGTCAGCTGATATCAAGTTGTCTTGTTTGTAACTGTCAATCTTTTACTTTAATCATCTCTAATGTTGTATTTTGCACTGACCGGTAACGGAAGTGATATGATCTCTGAGTCACTGATGGGAAGTAGTAACACGGGACAAAAACAATTATTTAAGCCCAATTATTTAACTGTGTTCTGGGTTTTACTCTGTTACAATATACGTGGGCAGTTCTACTCACACATGATACCTTGTGTTTGCAAGTGAGGGATGTTTTACATTAAAATTAGTTGAAGGGGAACTTTAAAAGTGAAAGTATTTGATTGTGTTTTCTCCCTATTATCCCTGGACAATTACTTTAAACACTCTTTGTTGGAGTGAGATTTCCACCCTTTGATGTCTTACAGTTGTCTCTTAAAAAGTCTCCCAAAAAACAGCAATGTCTAAACAGATTATTTTTGTAAAGCTGTTTGGAGCTTAGAAATACAATATGTTCCTAGTGCTTAAttgttttttaatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1455900 lncRNA downstream 1958 26244053 ~ 26245184 (-) True G1274620
TU1455935 lncRNA downstream 4375 26242551 ~ 26242767 (-) True G1274649
TU1455934 lncRNA downstream 5420 26241462 ~ 26241722 (-) True G1274648
TU1455873 lncRNA downstream 67895 26172870 ~ 26179247 (-) True G1274596
TU1455871 lncRNA downstream 69785 26171170 ~ 26177357 (-) True G1274595
TU1455952 lncRNA upstream 18896 26271326 ~ 26271598 (-) True G1274666
TU1455966 lncRNA upstream 32155 26284585 ~ 26284861 (-) True G1274680
TU1455970 lncRNA upstream 37170 26289600 ~ 26289845 (-) True G1274684
TU1455971 lncRNA upstream 37467 26289897 ~ 26290268 (-) True G1274685
TU1455978 lncRNA upstream 51123 26303553 ~ 26303760 (-) True G1274692
trnaa-ugc-65 mRNA downstream 122328 26124741 ~ 26124814 (-) True trnaa-ugc-65
XM_021562840.2 mRNA downstream 132683 26092332 ~ 26114459 (-) True cdh19
XM_021562837.2 mRNA downstream 445890 25786208 ~ 25801252 (-) True LOC110489880
XM_021562835.2 mRNA downstream 445893 25786208 ~ 25801249 (-) False LOC110489880
XM_021562833.2 mRNA downstream 472201 25770924 ~ 25774941 (-) False LOC110489878
XM_036944148.1 mRNA upstream 187565 26439995 ~ 26506670 (-) False LOC110489884
XM_021562842.2 mRNA upstream 187565 26439995 ~ 26506930 (-) True LOC110489884
XM_021562844.2 mRNA upstream 261249 26513679 ~ 26528614 (-) False pxdc1b
XM_021562843.2 mRNA upstream 261249 26513679 ~ 26528616 (-) True pxdc1b
XM_036944151.1 mRNA upstream 313921 26566351 ~ 26670122 (-) False LOC110489888
TU1455797 other downstream 198618 26046248 ~ 26048524 (-) False G1274532
TU1455798 other downstream 198674 26046248 ~ 26048468 (-) False G1274532
TU1452453 other downstream 2518203 23713355 ~ 23728939 (-) False G1271421
TU1452454 other downstream 2518203 23713355 ~ 23728939 (-) True G1271421
TU1452449 other downstream 2529683 23713355 ~ 23717459 (-) False G1271421
TU1456313 other upstream 259095 26511525 ~ 26512075 (-) True G1275015
TU1456314 other upstream 302538 26554968 ~ 26562033 (-) True G1275016
TU1456348 other upstream 317848 26570278 ~ 26571408 (-) True LOC110489888
TU1456686 other upstream 481783 26734213 ~ 26743607 (-) False LOC110489892
TU1456762 other upstream 584890 26837320 ~ 26841026 (-) True G1275434

Expression Profile