RNA id: XM_036944148.1


Basic Information

Item Value
RNA id XM_036944148.1
length 3518
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC110489884
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26439995 ~ 26506930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTAGCTAGCTAAGGGCGCGAGCTATTCTAGCTGATGTATCATGAGGTTGCAAGCCGTAGGGCTTTTTCTATGTTCAACGGTGCTTGCAATTGTCGAAGAACTCGATGACACGTTTAAAGACACCAGAGTAGATGATGTCTGGCTGGTGGACTTTTATGCACCGTGGTGTGGCTACTGTAAAAAACTGGAGCCCGTGTGGTATGACGTCGGCGCCGAGTTGAAAAGCTCTGGATCGCCTGTGCGAGTGGGCAAGATGGACGGCACTGCATATTCTGGCATGTCCTCAGAATTTGGAGTACGAGGATACCCCACAATCAAATTGCTAAAGGGTGATCTTGCCTATAATTACAAGGGGCCAAGGACAAAGGATGACATCGTAGAATTCGCCAACAGGGTAGCAGGGCCAGCAGTCCGAGCACTTCCAAGCAAGCAGATGTTTGACCATATGATGAAGAGACATGACGTGCTCTTTGTATACTTCGGCGGGGAGTCTCCACTCAAGGAGAAGTATATCGACATGGCTGCGGAGCTGATTGTGTATACGTACTTCTTCTCTGCGTCTGAAGACGTCTTACCAGAGTCAGTGACTTTGCCAGAGCTTCCATCAGTCGTAGTCTTCAAGGACGGGGCCTACTTTACCTATGATGAGTACGTGGACGGTGGCTTGTCTTCCTGGGTTAACAAAGAACGATTTCAGAGCTACCTGCAGATCGATGGCTTCACCCTGTATGAACTGGgagagacaggcAAATTGGTGGCGATTGCAGTCATCGACGAGAAGGACCCGACAGAGGAAAGCGGCAGATTAAAGACTCTGATTCAGAGAGTGGCAAAAGAATACAGGGAGCATTTTAACAGAGACTTCCAGTTTGGCCACATGGATGGAAACGACTACATCAACAGCCTCATTATGGGaGAGGTGTCGGTGCCGTCCATCATCATCCTCAACACGTCTAATGAGCAGTACTTCCTGCCCAGCGAGCCCGTGGAGACCCTGGAGCAGCTGGTTCACTTCATCAACAGTGTTCTAGACGGCTCCGCTCAGgCCCAGGGAGGAGACGGCATGTTCCAGAGGGTCAAACGAGTGGCCTTCGATGCCAAGTCCACCATTATGtctgtGTTTCGCAGCTCCCCAGTGCTGGGCTGTTTCCTGTTTGGTCTGCCACTGGGCGTGATCAGCCTGATGTGCTATGGCATCTGCACAGCCGAGTCGGACGATGGCCAGGAGGACATGGAGCTCATGAAGAGGGacgacgaggaggaagaggacgacGAGGAGGACGAGCCTCGGCAGGCCCCCGGGGAGCTGGAGGGCCCCGAGGAGGACggagagaatgaggaagaggaggagcaggaaaAGAACCCGGACGACAAGAAAGCAGATTAATGCCAAGGGTAGTGGAGGCGGAGAAACAGGCCTAGTGACATACATGGAACTCAGACACATATCAACAATgtgttgttttatatatttttcatcTTTATCATCCCCCGCCCCGCCCTACTGTTTTCTTTTCGCAGACTGTTTTTTTATTGCTATTGAATCTTATTAGTCAGTTAGGTCAGCCGCTAGGCAACGCACTAAAAAAATCATGTCCTTTATTAAATTAGCCTTTTGGAAATGGAATTACAAAGATTAGTCATTGATAAGTGTTGCAGAGAAGAAAGGAAGGAAATAAGCCACATTTTAGCTAAATGTATTATTATCATCTCTTAAACAACCACTACACAGGGTCATTCCATACTTTGAATCAGGTAgcatttgtgtaaaaaaaaaaaaaggtgacCCATTTTTCCTGTGTTCAATGGCACTGAAATATTTGATATTGATTTATACACTTTGTTCTGTTGGAATTTAGAATTCCCAAATCAAAGATTTTGATTACTACTACCCCCCGAATGTTGCAATTCACCCATAGTCGACTGCAGAGGAAGTGCCCATGAAGGAAAATTTGCCATAAAATGAATACTCATGCTTTTCAAATGGAATCTCATGTTTGTAACTCCAGACACTTATTCATAGAACAGTGTACAACAGTGGAAATGATGCAAACAATCACATAGAGCCCACAATCTGGATAATGTAAGGTTGAAGGGATGTCTGGCTTATTTACCCTGCTGTAGTTTTAAATAGACACACTGTACAGTAAGTAGTTTTTTCTCTATTTTAGATGGCCAATGGTTAATGTAATGGGAGACAGGCTTAATGACATCAATATGGGTttgtgcatctgaaatggcaccctattccctatatagtgcactacttttgaccagcctggccaaaagtagtgcactatatagggaatagggtgccatttcagatgcaaacATGGAATGGTTATACACTTGAAGACAATGGCTGATCAGATCCAAAATGGTGGCTCTTTGCTCTCCTGCAAAAGATCTTCACCACCTGTTGTCCATCACTAGTTCTAGTTCTGGTAGGCTATGTTTCTGGGAAGGAAATGGTATCAGATTGCATACAAATGCACTGAGATTACAATACAATTCAGTGTGAGTTTACTCAATGCACTGACAAAATCCTGTTGGGAGTTTTTACAGTACTTAATGACAGTACATTGCAATAAAAGGGTCATGTGGCGTTTAAAGGGGTACACTGTCGTTTATATTCTTAGTTCTACATAAGCATTGCatgacaaacaatgtatatgataTGACCTACGGTTGATGAACAATGCCAGATCAACTACTACAACGGTTTATCTTATGGATACATGGCATACTGATGTTAATGAAATGTTAGATCAAGGTCATATAAGTATTACGAAAAACATGATCTCCAGCCCTCGTTAAGTTACCCAGTGAAACTATTATATTACATAACAATTGTTACGTTTCTGTTCAACTTTTTCTTTAGCGGATTTCATAGAAGTTTTGATAGTTTAGAAACAAAACCAACACGTGCGCAACTATAGGGCAAAACAGATTGTGTTAGATTGGAGACTAAATATATAACATTTTGTCATCAATGTTTATCGAAaacaatacatttgcacaatgagcacttatCTCAAATAGATCGTTACAGTTGTTAGTTGGCTAGCAAATTtgagccatattagcatagacatgaCTTCAGTCTAAGCACCtcaaaaacaagacatggtatcaagaacaagatgaaactaGCTACCTACGATTCCCCACGTGgtagcttcttgtcattgttgctagctatctggccatccagaatcacaacacacTGCCCCATTGAAGCGCGCGCATCGTTTTCGTGACGTCAGCTAAAACATCTATTGCGCTTGTGTCTAGCGTTTAGTTGACAAAATTAGGCACCCGAACCCAAGTACTAATCTTGGTTTTCAGAAGACAACTGTGAAACTGCACTATGGAAACCAACATGCCCTTGCCTTGCATTCTGGTCATTGTAGTTGCCTACCATTCTCTGCCAAACTTTGCTCATTGGGTTTGAATTGAGATTGTCACACTTTATTACTGGTTTGAAATAAAGATTGTCCTCTTTTTCTTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1456054 lncRNA downstream 71470 26368246 ~ 26368525 (-) True G1274768
TU1456043 lncRNA downstream 81593 26357907 ~ 26358402 (-) True G1274757
TU1456041 lncRNA downstream 82808 26356958 ~ 26357187 (-) True G1274755
TU1455993 lncRNA downstream 126621 26313099 ~ 26313374 (-) True G1274707
TU1455992 lncRNA downstream 127066 26312663 ~ 26312929 (-) True G1274706
TU1456311 lncRNA upstream 55913 26562583 ~ 26564647 (-) True G1275013
TU1456346 lncRNA upstream 59727 26566397 ~ 26567712 (-) False LOC110489888
TU1456354 lncRNA upstream 64936 26571606 ~ 26571883 (-) True G1275055
TU1456355 lncRNA upstream 65253 26571923 ~ 26572184 (-) True G1275056
TU1456422 lncRNA upstream 179352 26686022 ~ 26687096 (-) True G1275120
XM_021562841.2 mRNA downstream 187565 26247142 ~ 26252430 (-) False LOC110489883
trnaa-ugc-65 mRNA downstream 315181 26124741 ~ 26124814 (-) True trnaa-ugc-65
XM_021562840.2 mRNA downstream 325536 26092332 ~ 26114459 (-) True cdh19
XM_021562837.2 mRNA downstream 638743 25786208 ~ 25801252 (-) True LOC110489880
XM_021562835.2 mRNA downstream 638746 25786208 ~ 25801249 (-) False LOC110489880
XM_021562844.2 mRNA upstream 7009 26513679 ~ 26528614 (-) False pxdc1b
XM_021562843.2 mRNA upstream 7009 26513679 ~ 26528616 (-) True pxdc1b
XM_036944151.1 mRNA upstream 59681 26566351 ~ 26670122 (-) False LOC110489888
XM_021562847.2 mRNA upstream 59681 26566351 ~ 26694581 (-) False LOC110489888
XM_021562848.2 mRNA upstream 59681 26566351 ~ 26694581 (-) False LOC110489888
TU1455797 other downstream 391471 26046248 ~ 26048524 (-) False G1274532
TU1455798 other downstream 391527 26046248 ~ 26048468 (-) False G1274532
TU1452453 other downstream 2711056 23713355 ~ 23728939 (-) False G1271421
TU1452454 other downstream 2711056 23713355 ~ 23728939 (-) True G1271421
TU1452449 other downstream 2722536 23713355 ~ 23717459 (-) False G1271421
TU1456313 other upstream 4855 26511525 ~ 26512075 (-) True G1275015
TU1456314 other upstream 48298 26554968 ~ 26562033 (-) True G1275016
TU1456348 other upstream 63608 26570278 ~ 26571408 (-) True LOC110489888
TU1456686 other upstream 227543 26734213 ~ 26743607 (-) False LOC110489892
TU1456762 other upstream 330650 26837320 ~ 26841026 (-) True G1275434

Expression Profile