RNA id: XM_021562843.2


Basic Information

Item Value
RNA id XM_021562843.2
length 2247
RNA type mRNA
GC content 0.44
exon number 6
gene id pxdc1b
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26513679 ~ 26528616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagaggagtcaACTTCTGCGAGGGGAGGAAACCGACGGATATTTTTCGCCTGAGCGACAAAAGCCGTCAACTCTGGAATCAGTGTGCAAGATGCATCCTCTAAAGGCAAACGTCGACAAACTGTCAGGGGATTAAAGCCTTGAAGAACAGGACATCGAATATGCAATTCTTTTGCATTCAGTTCTACGCATGAAGTTAATCAGAAGACTCGTAGAAGAACAGGTGGGCAATGTTATTCCAAAGTCCATGACTTCACTCCAACGTCCCACTCCTTCTCAGAATGCTGGACTGACTGCTGAGGAATGGCATCGGCGATATTCGAGGGGACGTCTCTGGTCAACATGTTTGTCAAGGATTGCTGGGTGAACGGGATCCGGAGACTGATCATAAATCagcgaggagaggaagaagaattCTACGAGATCAGAACCGAGTGGTCAGACAGAAACGTTTTGTATTTGCACAGGAGTTATTCCGATTTTGGGAGATTGTTCAAAAGACTGGTTGAATCATTCCCTGAGGACAGAAGAGCTCTCTCCAAGTCGCCGCTTATCGAAGGTCTGGTTAAGATTAAAGAGGCCAGTGACATTGAGCTGAAACTAAATGAGGTGGAGAAGCTACTGAAGAATGCAATCAACATGCCATGGAAGTATTCTAGGTCAGAGGTGGTGTTGACATTCTTTGAGCGATCACCGCTGGACCAAGTGCTGAAAAATGACAACGTCCACAAGATCCAGCCATGCTTCCAGAGTCCATACAAGATATCAGAGATCATGCGTTCcaatggcttctgtctggccaacaCTGAGACAATCGTGTTTGATGAGAGTCTGCCACAGGACGCAGAGAGACCCTCATCCACTgactctgctgctggctctgcaGAACACCTGTACGAGGATGGCAGGGAGTTCCTGACGGTGGAACCAGACATCAGTGACGATGACTCCGATGCCTACGTCACAAACCTGTCTTACTACCATCTGGTCCCCTTTGAGACGGACATCCTGGAATGAGGAGCCAAAATGGCTGACGGTTAGCATCACTGCCTGCTCAGATGCTGTCAGAAACCAACCCATGTCATGTGACCTAGCTGTGGACAGCTTTGTCCAGCATGTTGGCCACAAATGTTACAGTAGCTGCACAACTTCACCGATTAACTTTGCTACTGCTGCTTAAAGGCCAACGTTTGTCATGGCAGCTTTGTCTCTGTCGAATCGGAGAGCAGATCCTGGGGTTCAGCGGCTGTatggacagacatacacacagactgtAGTATTACTCACAGCAAGATTGTATATAGAGAGATTTAATATCACTGGCTTACAAAGTCCAATGTCTGTGATATCACCAGTGTGCCTCGTCCTCTATCCTCAAGATGTGGTTATAAGGAAATAAGGAGATTGCCCATTTCTTGCTtcctgtgtcctctctcctctacaatTGTGCATTTTAGTTTTCTTTGGGATTGAACTTGGTGTACTTCATAGAACTGTGTTCAGTATCAGCCTTAAACTGCAGTCTTGTCATTACAACCAGTATTACGAAAGATTATTGTTTTATGTGGAGTGATAGCTTGACTTTTCTAATTGGGATTGAATGGGAAATTAACTTTTTTTTGGTTCAATGTGACTTttcctcaccacaccacacctatACCTACCACACCTATATGTTAGGACGACAGGTTAGGGATGTTATTGTGTTCAAAACATCAAATCGGAACACTACATCACTGTATGAATGACAGTACCAGATTGGTTTGAGTAGCAAAAATTGAACAGTTGCGTAATCTTCGTCTAGGGGATTGTTATCATGTGCATAGTGTACGCAAGCAGTGTTTTGCTGGTTCAAGCAAGGCCATGTCAGACCCTGTATTATGCTGTATAGGCTACTGTAATTCCACAACTCAGTCCAACAGCTGACTATAGTCTCTGTGTGGGAGTCGGCAGCGTAGCCAGCCACTGGAGAAACAAATATTCTCTGTTTCTAAAGATAACAAATGACAATGTTGTGTGGAAAACCACTATAAGGGAATTTAGGCCAACACTGGATTTTTCCTCTTCCTGTTGTTTGGCAAATAAACATCAGTTTAAACACAGCCACAACATGATTTCCCCAATATCACTAAATAAGACATCATTTGGACACCAAACATGTGGGAATGGCACATTTGAAAATATGGCATGCCCCAACATGGTTTCTGTCCACATTTCAAGTCAAATTAAAgatgaaaaaaacaaaa

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1456270 lncRNA downstream 43784 26397313 ~ 26469895 (-) True G1274974
TU1456054 lncRNA downstream 145154 26368246 ~ 26368525 (-) True G1274768
TU1456043 lncRNA downstream 155277 26357907 ~ 26358402 (-) True G1274757
TU1456041 lncRNA downstream 156492 26356958 ~ 26357187 (-) True G1274755
TU1455993 lncRNA downstream 200305 26313099 ~ 26313374 (-) True G1274707
TU1456311 lncRNA upstream 33967 26562583 ~ 26564647 (-) True G1275013
TU1456346 lncRNA upstream 37781 26566397 ~ 26567712 (-) False LOC110489888
TU1456354 lncRNA upstream 42990 26571606 ~ 26571883 (-) True G1275055
TU1456355 lncRNA upstream 43307 26571923 ~ 26572184 (-) True G1275056
TU1456422 lncRNA upstream 157406 26686022 ~ 26687096 (-) True G1275120
XM_021562842.2 mRNA downstream 6749 26439995 ~ 26506930 (-) True LOC110489884
XM_036944148.1 mRNA downstream 7009 26439995 ~ 26506670 (-) False LOC110489884
XM_021562841.2 mRNA downstream 261249 26247142 ~ 26252430 (-) False LOC110489883
trnaa-ugc-65 mRNA downstream 388865 26124741 ~ 26124814 (-) True trnaa-ugc-65
XM_021562840.2 mRNA downstream 399220 26092332 ~ 26114459 (-) True cdh19
XM_036944151.1 mRNA upstream 37735 26566351 ~ 26670122 (-) False LOC110489888
XM_021562847.2 mRNA upstream 37735 26566351 ~ 26694581 (-) False LOC110489888
XM_021562848.2 mRNA upstream 37735 26566351 ~ 26694581 (-) False LOC110489888
XM_021562850.2 mRNA upstream 37735 26566351 ~ 26694581 (-) False LOC110489888
XM_021562851.2 mRNA upstream 191171 26719787 ~ 26723716 (-) True LOC110489889
TU1456313 other downstream 1604 26511525 ~ 26512075 (-) True G1275015
TU1455797 other downstream 465155 26046248 ~ 26048524 (-) False G1274532
TU1455798 other downstream 465211 26046248 ~ 26048468 (-) False G1274532
TU1452453 other downstream 2784740 23713355 ~ 23728939 (-) False G1271421
TU1456314 other upstream 26352 26554968 ~ 26562033 (-) True G1275016
TU1456348 other upstream 41662 26570278 ~ 26571408 (-) True LOC110489888
TU1456686 other upstream 205597 26734213 ~ 26743607 (-) False LOC110489892
TU1456762 other upstream 308704 26837320 ~ 26841026 (-) True G1275434
TU1456819 other upstream 414679 26943295 ~ 26944164 (-) True LOC110489898

Expression Profile