RNA id: XM_021562847.2


Basic Information

Item Value
RNA id XM_021562847.2
length 7174
RNA type mRNA
GC content 0.56
exon number 15
gene id LOC110489888
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26566351 ~ 26694581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGGCGAGGGAAAGAGCAGCTGGAGTTCTACACTTCGCCCTCTTCTCCTCGAAAAGCATACTTAATGTAATAACAACAGTCCACACGTTTTTGTAAACACTTATGTTGTCTTATTCATACAGGTTCATCATCGGCCATCGTCAGGTATGCAGGGAGGCTCACAGTATTAGTTCAGTGTTCGCTCTATTCAGAAAACTGTGAAAAGGAGAAAGACGCGGAAAAGAAGGAAAAGTCTGGCAGAGCGGTTTTCGGAGTTGGTGTCTCACAACTCCAGAGCGCGAGAGGCACATCTGCAACAAGCGAAAAAAGACTTCACTTAAGAGAAGAAGACAGAAAAGATCAAGAATTATTGGAGGGAAACATCCTTCGAACACGTGTCCTGTCTCCATGACGTGCTGAGGAATGAACAGTCGTCATGGAAACCCAGTCCCAGGCCAGTTCTGCAgctgagaagaagaagagggtggAGACCATCGTGGCGACCAAGGGCTCGTCGGCGCGTGCCGACATCAGCGAGAAGGCTGTGGCCTCTAGCACTACGTCAAATGAGGATGAGAGCTCGGGCACgccgtaccaccaccaccaccaccaccaccgtgaGAGGCGCAATGCCATCAGCACCCAGGCCCCCACACCCGGGCCCCCTGGCAGCAAGCTGGGTGAAGAGCCCTCCACCTCCACAGAAGAGCGCCCACCGTTGGTAAAGAAAGAGTTGCACAGCTCGCTGCCCCACCTGGTCGACCACGGCCTCCCGTACCGCGGCACGCTGTTCGCCATGGACCCTCGCAACGGATACCTGGACTCCCACTACGCCCCGCCACAGTTCTTTCCTGCTTTCCATCCGCCGGTGCCCATCGATGACAGACACGCCCAGGGACGCTACATCTACGAGCCGTCCCCTGTTCCCCCGCTGCACGTTCTGTGTAGGCCTCCTTCGCTGGCCGGCAGCCCGGCGTTCTCCGACATCTCCCTCATCCGGATCTCCCCCCACCGGAACCCCTCCGTGGGGGCCGAGTCACCGTTTAACCCTCCGCACCCCTACATCAACCCCTACATGGACTACATCCGCTCGCTCCACTCCAGCCCCTCCCTCTCTATGATCTCTGCAGCCAGGGGTCTCAGCCCTGCGGACGTCCCTCACACAGGCCTGACCACTGCAGAGTACTACCACCAGATGGCTCTCCTGGCGGGCCACCGTAGCCCCTACACGGACCTCCTCCCCTCCGTGGCCTCCACGGCCGGAGCCACCAGCAGTGCCCTGCACATGGAATATCTGCAGGCCGTGGAGAGCTCTCGGTTCCCCAGCCCCCGGCTGACAGCGAGGCCCAGTCGGAAGCGGGCCCTGCCCATCTCTCCCCTGTCGGAGCACAGCTTCGACCTGCAGACCATGATCCGCAGCTCGCCAAATTCCCTGGTCACCATCCTCAACAACTCCCGCTCCAGCTCCTCCACCAATGGCTCTTACGGACACCTCTCTGCCGGGGCCATCAGTCCGGCTTTGAGTTTCGCTTACCCTCCCACCCCAGTGGCACTTCAGATGCACCAGCAGCTGCTTGGTCGGCaaccagggattgtgggttctgCATTCGGCCACAGTCCGCCCCTCATCCACCCCTCCCCGGCCTTCGCCACCCAGCGTCCAGTCCCGGGCATCCCTCCCCCTGGCCTGACCCCCAGCGAGCGCTCCGTCATCTCCAATGACTCCTCTCAGACCAAACCCACTAGCGAGTCAGCGGTGAGCAGCACTGGGGACCCCATGCACCACAAACGCTCCAAGATCAAACCGGACGAGGAGCTACTCAGCCCAGGGGCCGTATGTTGCCAGGACCATCCTGATGGGATGACTCTTGTGAAGGAGGAAGGGGACAAGGACGACAGCAAGCAGGAGCCAGAGGTGGTGTACGAGACCAACTGCCACTGGGAGAGCTGCCACCGGGAGTTTGACACCCAGGAGCAGCTAGTACATCACATCAACAACGACCACATCCACGGGGAGAAGAAGGAGTTTGTGTGTCACTGGGATGAATGTTCTCGGGAACAGAAGCCCTTTAAGGCCCAGTACATGCTGGTGGTCCACATGAGGAGACACACCGGGGAGAAACCACACAGATGCACCTTTGAGGGATGTCCCAAGGCCTACTCTCGCCTGGAGAACCTGAAGACTCATTTGCGCTCCCACACCGGAGAGAAGCCGTACGTCTGTGAACACGAGGGTTGCAACAAGGCCTTCTCCAACGCCTCCGACAGAGCCAAGCACCAGAACCGCACACACTCCaacgagAAACCCTACGTGTGTAAGATCCCTGGCTGCACCAAACGCTACACGGACCCCAGCTCCCTACGCAAGCACGTAAAGACCGTGCACGGGCCAGAGGCGCACGTGACCAAGAAGCAGCGCAGCGACGCCTTCCCACGTCCCCCGCCGCAGTCccgagaggggggcaacggacaGGGCCGGTCGCCGGGGCAACTAGGGGGATACGCAGACCAAAGGGAGTACAACCACGCTACCTCGAAACAGGACGAATGTCTGCAGGTCAAGTCCATCAAGACGGAGAAGCCTATGACGTCTCAGCCAAGCCCTGGCGGTCAGTCTACATGCAGCAGTGACCAGTCCCCCATCAGCGCCTATCCCAGCCATGGAGTCCAGCTTGCTGTGAGGGGAGGGGTGGTGGGACTGGGCGAGGGGCCGGGAGAGGAAGacgaggagctggaggaggaggagggtttggAGGAGTTGGAGGGGGGCCGTGACGCCCCCATAATGGACTCCACGGTGTCGACAGCCACGGCGGCTACGTTGGCGCTGCAGGCGAGGAGGAACGTGGGCCGGCCCATGAGATGGATGGAGCACATGAAGATGGAGAGGCTGAAGCAGgtgaatggaggaggaggagccctTGTGCCCAGGGTGGGCCCCCTGTCCCCCACACCGCCACCCAAGGGACCTGCCGTGCTGGgttcATGCCTGGGCAGGTTATCCCAGCCTCCTCCTCGTCCCGAGCTGGGTAGCACAGAGCTGACGGTGCTCAGCCTGCTCCGCGGCATCGAGCACGGTGACCGGCGGGACAGCAGTGGCAGCGCCACCAGCTCGGCCTACCTGAGCAGCAGCCGGCGCTCCTCGGGCATCTCTCCGTGCTTCTCGTCACGGCGCTCCAGCCAGGCGTCCCAGAGCGAGGCGGCCAACACCCCTGGTCACCACCGCCGCCACCACAACCTTAGCTCCACCGACTCCTATGACCCCATCTCCACTGATGCCTCACGCCGTTCCAGCGAGGCCAGCCAGTGcgggggaggaggtggagtgtTTGTGGGTGGAGGGTGGGCGGGCGTCGGGGGAGGCTCCAAGGGTATGCTCAACCTCACGCCGGCGCAGCACTACCACCTGAAGGCCAAGTACGCTGCTGCCACGGGCGGCCCACCCCCCACGCCGCTGCCCAACATGGAGCGCATGAGCCTGAAGACCCGCATGGCCATGATGGGCGATGGCCAAGACGGATGTGGAGGCAACCACGCGCTGCCCCCACTGGTCAGGCCGCGCCGCTGCAGCGACGGCAGCACCACCAATGGGTACGGGGGCCACTGCGGGTACCGAGACTACCGGCGTAGGGGCTATTACCCCGGCGAGGGCCCGGGGAACGGCCCGGACCGGAGGGCTAGCGACCCCGTGCGGACCCAGCCTCAGCAAACCCACCCGGAGTTCCTCGGGCTGCCCCAGGTCCAGCGCTTCACTAGCCTTAACAACATCCACCCACTTCCCCCTCTAGCAGGCCTCCAGCATCCCACGGCAGAGGGCCGCAGCTTCAGCCTGCAGAACTACACACGCTCAGAGGGGAATCTCCAGAGAGGGGGCCTGCTTTCCTCTCCCTGCCCCCCCAGTATCATGGAGCATGCGGCCCTGGAGGCCCTGgctatggaggaggagggagcccTGCTGCTGGGGGATGAGGACATGCTGCCTGACGACCTGGTGCAGTACCTCCGCTCACAGGACCAGGCAGACTCCTACAACAACCACATGGAGAACCATGTGGCTGGGGACAACGGCCATCTCCCTGGAGGGGAGTTACAGGACCAGGGCCCAGGGCTGAACCAGTGCATCCACAGTCTCCAGCAGCGCCACCaacagcagcagggactggagagagagggcccCAGTAAAGACGGCATGCCCATTCAGTGGAACGAGGTCAGCTCAGGGAGTGCTGAGAGGTCCCCCCAGAGGCAGCCCCAGGTCCAGGCCCAGCAGAGGTGTGGCCGATGGGCCGCCACAGAGCAGCACCAAGGTCTGGGTGCCGGTTCATCATTCGGGAGGTTTGGGAACATGGTGGTGCAGCAGCAAcaacagacagttactaccagAGACTTCCAGAACCACTGTGCCCAGCCAGGCCAGCCCCAACCCCTATGCAGAGTCAATGGCGGGGTGAAGCTAGAGGCGACCACCCACTCCTGCATGGAGATGAGAGGGAACGGCCACAACCCCACACACACTTTCGGCCGGCCTGACTTCTCCCAGATCTCTGTGAGGCCTCTGCCCCAGGGCTACAGCCAGCAGCAGTACCAGACCCAGAACCATGGAATCTCCAGGCAGATTGGAGACAACCTGCTCCTCAGCCGGGCCTCCGTGGACAGCCTCTCACAGGCCCCAGcgctccaccaccacccccaagCCCCCGCCCCCCGCCTGCAGCAGGCCAACAGCAGCTATAGGCACCCCGCCAGACCACAGCAGTACCTGAATGCCCAACAGAGCACCACCAACGGTAGCCATGTAAACCTTACCCAGCAGAACCTCACCCAGCAGCAGCAGAGTCTGAGGAACCAAGCCAGTCACTGCTCCCTGGCCCACCAGGTGTCCGGGCTGAAGCTGGAGGCTCCCGACCAGGGCTACCTGGACCAGAGCTTCAGCGACCAGGCTGTGTGCTTTGACCCGCTGGAGACCAAGACCTCGTCTTTCTCTCCAATGGAGGAGCAGTGTCTGCTGGAGACCATGAACGAGCAGGTGGGGCTAGGCGGGGACTCCTCGGTCGtggcctccctcctctccccggTGGCTGACCAGGTGACAAGCACGGTGGACAGCCGCGCGGGCGGCTTGGTCAACGTGCTAGACAACGTGTTGCCGCTGGATTTCGGAGCCATGATAGAGGACGTGCGGGTGGGCTATGACCAGGGTAGTCTGGTGTCGGGGGTGATCAGCCCCTCCATCTTCCAGGGCATGTCCCGGAACTCGTCCCGCCTCACCACGCCCCGGGTCTCCGCCACCTTCCACAGCACCGCGGGCATGATGCCCTCCAACCTCAGTAACATGGCCATCGGGGACATGAGCTCCCTGCTCACCACCCTCGCCGAGGAGAGCAAGTTCCTAGCCATCATGCAGtaactctccctccttcctttgctccatccctccctcccgttGGTGAAAGGAAGTAGAGGAAAAAACTGACGCATGTAAAGAACAGAGGGGAAAAGGTGGCGGCGCTTAAGACAAAGTGACAGATTACGAGTTTATTATACTTACATAGTGCACCCCGAAACAAATTTGTTGCCAATCAGATTTATTTTGTAAAAGTGTCATCCCCTCCCTTCTGAGACAGGGGATGTGACAAAaagtatatatagatatattccTTTTCTGGAATGAAGGCTATTTTTGGAAGCCCTTCCCTTTGTATTACGATGGTGAGCAAGTGAGGCCTCTGACGGCCTCTCTGGTCTCGTCCCTTTGAAACAGTATTCTGTGTATCGtcgctgttttttttgtttttctttgctGTACACTGTTGGTATAAATGCATGTTGTATTCAAGGTCAAACATAAACACTGTCTTTATAAGTACGTAGACTAGCACGTGCCAAGTATCTAATCCTATTGGATGTGCCATTTACCATTATGGTACAACGGATGCCCATGGCGTTATCCTTCTATAATGACTTGCTTTATAAAATGATATTTACACCTTTGCTATTGTCATTTTGTTCGTATGTTACTTTTGCGAATATGTAAATGTTAGTGTTTCTCAGTGCTTCTACCAAGTCTTACCAATTGATGGTGTGTGTTTGACAGAGTATTACAAATAATATGGTATTGAGCCCACGTTTAAAAGGACCAGCCTTCAAAGTCTTAGAATTCACACAAGCGTCATAAGTAGCTCTTCAATTCATACTCCAATTGCTTGATTTTACATTGTCCGTAATGGTACTCACAGGTGTATATaacaacgttttttttttgtatattttctTTGTGAGAATCAGATTCTCGCTGTCAGATCCAACAGATCCATTAATTCTAAGAGTAGCACATGATTCACAGACCAAAAGTGTAGCGTTTGTATGTTCTGTTAGTTTTTATCCACCATTATATTTGACATCTGATTCTGATGTCTATTAGACATTCAAATAGTGGATAATCCATATTCTATTCTCCAAAGTAGTACAGCACCGTATGTCTTGCCACTATGGAGTGCAGCGACTTTTTCAACAGTGTTAGTATCACCTTACAGTCTCACATgacagtgtgtacagtatattaaaTTGTTTCCTTATTCTTCAGTGGCAAAGCAATGAGGTACGGAATCGTTTTGGTGTTTTTTGGTACTTTTTGTCTTTTTTAGCTGTGCATCAATGGTGTTTTGTTTTGAAAGAGGTAAGAATTCATTCCCTTGTCAAAGGAGACCAGAGGGAATGGCCATGAGGGTATGTGCCTTAAAATCTGCCTGTCGGAAAAGAAAAAGATCACTGCCAATCTTCCATTGTTAATTATGAAAAAAAATACACATGCTAAGTGTTTTGTGAGACCTGTAAAATTTACATAaacatttatattaaaaaaaatgatTATTGAAAAGGTCAAGATGTGTAAAATGCatctttagttttttttttcccacattttcttGCCTTTTTGTGTTTTTATACCTGTAAATACATTATTCTTTCTGTAGGTTTAGCTCAGATATGAGGATGAGGCACGAGGGGCCAATAAAGAAATTACTCTTAAAGCAGGGATTCCCAGACCCTGCTTCTAGTCCAGGCAGATTTGGCTCTGAATGGTGCACGTAGTGCTCAGCACTGCCCGTCTGCCAGAAGAGCCACTTTGCTATTTTATAACTGACCACAAATGTTTGTATGGTTTTAATAAAAAAAAGGAAATTATATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1456311 lncRNA downstream 1704 26562583 ~ 26564647 (-) True G1275013
TU1456270 lncRNA downstream 96456 26397313 ~ 26469895 (-) True G1274974
TU1456054 lncRNA downstream 197826 26368246 ~ 26368525 (-) True G1274768
TU1456043 lncRNA downstream 207949 26357907 ~ 26358402 (-) True G1274757
TU1456041 lncRNA downstream 209164 26356958 ~ 26357187 (-) True G1274755
TU1456428 lncRNA upstream 887 26695468 ~ 26695748 (-) True G1275126
TU1456663 lncRNA upstream 13332 26707913 ~ 26708152 (-) True G1275351
TU1456668 lncRNA upstream 20594 26715175 ~ 26715387 (-) True G1275356
TU1456670 lncRNA upstream 22458 26717039 ~ 26717239 (-) True G1275358
TU1456695 lncRNA upstream 37575 26732156 ~ 26732498 (-) True LOC110489890
XM_021562843.2 mRNA downstream 37735 26513679 ~ 26528616 (-) True pxdc1b
XM_021562844.2 mRNA downstream 37737 26513679 ~ 26528614 (-) False pxdc1b
XM_021562842.2 mRNA downstream 59421 26439995 ~ 26506930 (-) True LOC110489884
XM_036944148.1 mRNA downstream 59681 26439995 ~ 26506670 (-) False LOC110489884
XM_021562841.2 mRNA downstream 313921 26247142 ~ 26252430 (-) False LOC110489883
XM_021562851.2 mRNA upstream 25206 26719787 ~ 26723716 (-) True LOC110489889
LOC110489890 mRNA upstream 30874 26725455 ~ 26733092 (-) False LOC110489890
LOC110489892 mRNA upstream 39770 26734351 ~ 26743932 (-) False LOC110489892
XM_021562868.2 mRNA upstream 248141 26942722 ~ 26952371 (-) False LOC110489898
XM_021562867.2 mRNA upstream 250724 26945305 ~ 26952371 (-) False LOC110489898
TU1456314 other downstream 4318 26554968 ~ 26562033 (-) True G1275016
TU1456313 other downstream 54276 26511525 ~ 26512075 (-) True G1275015
TU1455797 other downstream 517827 26046248 ~ 26048524 (-) False G1274532
TU1455798 other downstream 517883 26046248 ~ 26048468 (-) False G1274532
TU1452454 other downstream 2837412 23713355 ~ 23728939 (-) True G1271421
TU1456686 other upstream 39632 26734213 ~ 26743607 (-) False LOC110489892
TU1456762 other upstream 142739 26837320 ~ 26841026 (-) True G1275434
TU1456819 other upstream 248714 26943295 ~ 26944164 (-) True LOC110489898
TU1457301 other upstream 534299 27228880 ~ 27231479 (-) True LOC110489905
TU1458029 other upstream 1264471 27959052 ~ 27959434 (-) True G1276566

Expression Profile