RNA id: XM_021562958.2



Basic Information


Item Value
RNA id XM_021562958.2
length 4714
RNA type mRNA
GC content 0.52
exon number 9
gene id emilin2b
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28316887 ~ 28335821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTGCGCCAACTCGTTTTTTATTCGGTTAAATTTACGTCTAAAATGACACTCAATCAAATGTATCTATAACACTATGATCTCATTTCAATGCACACTCAATCATTTGGCATATTCTAAAAAGTGTCTTTAGGTTTTGTTCGAAGTTTTATATGAGTAGTACTTTAGTCAGTGTCCCCGCCGATCTGAAGGTGATGGTCATATGACACCCGCATATCAATAAAACATGTTTGCTACAAGATGTATCACTTACAATAAAGTGATGCTAGTCTGACACTCTCACATGTTTGCAAAGCGGGGGGTCCAGAACCGAGTTTGGGAAAACCTGGTGTAAAGCACTGTATTGCATTATCCAGTGGGCTGGATATGAAAGCGTTCCTTTGGGGACTTCGTCACTAGAGTTGCATGCATGCAGTCAACCACATTCAAGTATTTTTCAAGAAAGCAGGGAACATGATCTCCGATACAAACTGAAGCAGATGAGTGAGGAAACTACGAAACGGGATTTAATCACTGTTCTACTGGGAGCGCATTTTACTCTCTGGGAGTGAGGAGCACTGGTGAAGGGGGTTCGCTGTACCCCGAACGTCACGTCACAGGCTGCTATACCCTGGAAGAAAGTTTGTATTATCAGCCTTTCGAGTTGCTGCTAGGAGAGGGACCAAAACGTCTAACCTCAATGCTTACATGTTTAATATTTGTCTACTTTTTTCCGTTGTATTAAAATGAAGTGCCTTCCCACCGGATTCGTCTTAAAAAGTGCCTTATTTCCCTTATTGCTCACCTTTCCATTGATCAATGGAACGCCGTCACGGTATAACATGTTCCAGGGAAGCGCATACTCTGGCTCAGAACAACGACAGAGGAATAAAAACTGGTGTGCATACGTCGTGCAGAAGAACGTGAGCTATGCGGTCGTGGGTGGCACCGAGAGCTTTGTGCAGCCGGAGTCTGCGCCTTGCCAGATGCATCAACTCAACTGCGCGCAACAAGTGATGTATCGAACCCAATTCCGCCCCATGTATAAGGTTGGCTATaagctggtgacagagctggagtGGAGGTGCTGTCCAGGGTACCAGGGTCATGACTGCAAAGATCTGAAAGGTGTCCCGTTCCGTCAGACAGTCCTGGGGCCTCGGTCCAACCCGCCTCCTGCCCCTGGACACATCGCAGAGACACAGGGTCCGGGGCAGCAGGCGTGGGGTCAGAGTGGCCACTCCTGGGGGGCAGAGGGGCAGCCAGGAGGTCAGACAGGCCAGGGGGGGGTGAGTGGCCAGGTGGCGAGCCAGGGAGGGAGTCAAACGACACAgcagatggaggaggaggtgcagcGTCTGTCACAGCAGGTCCTGGACATGCAGGCAGCCATGACCAGCCTGTCTGCCAACCTGAGGGTGGATCTGCAGGAGGACGCCAGCAAGATGCTGGTCACGCTGCTCAACAACTTGCGGCAGCCGGAAAGCGTGCGTGGCGAGCAGCAGAGCATGCTTCTGCAGGACCTCTCCATGGAAAAGGAGTACAAAATGGTGGACATGGACGAGTTCACAAACAAGATCAACAACCTCACAGACACCCTCAACACCAAGAGCAACACCCTGGATGACCTCCATTCCAGGGTCAACCACCATGACGGACAGCTACGTCTGCTAATGGAGGCCACACAGGCCCCTCTGGCCACACCCCCTCCGGCTCCCCCGGCCAATGACGCGGCCCTGCGCGCCTACGTGGATGCAAAGTTTCACGCCCTAAGGGACGAGATGATGGAGGGCATGGAGATCAAGATGTCGGACTTGAAGAACTCGTGTGACTATAAGATTCTATCAGTGCAGGAGCAGTCTGAGTTCCAGGAGAACAGCTACCTCAGCCTGACTGAGCTCCTCGAGTCCAAGGAGATGGACCTCCGCAAGGAGATCCAGGACCTCAAGAATGAGCTGCCTGGTCTGCTTAGGGGAGACGGAACCCCACCAGGTCTGCAGGAGCTGCAGAAGGAGCTGTTCCGGGCCTCTGGGGCCCAGCCAAGACTCCAGTCCAGCCTAGAGAAGAAGCCCGAGCCTGACCAACTCCTGCCCCATGCGGAAGAGCTGGAGGCCCATCTAAACATGTCAGAGAGGAGCGTGGAAGTGCACAGCCTCTTCCTAGAGGAGAAGCTGAGGAGAGAGTGGGCAGAGGGGGCTACAAACCTGAAGAAGGCCATTGAGGACAGGATGAGCTCCATGGAGGACCGGGTAACCAGTCTACTGGTGGAGATAAGCAGCCCCCTATCTAGGCCTCAGGCTGTGCTGGAGGCACTGCCGGGTGAGGTGACCTCTCACAAGACCAGCGTTCAGGCTCTGGAGGACAGATTCAATGCCCTTGACCAGTTGTGCTCTACAGAGTGCAAGTCTGACCAACTGGCCATAGAGAGCATTCAAAATAACCTCCAGGTCTACAAAACTAGCCTAGACACCATGCAGTCTAGCATGAAAGGCCACTCAGCTAGTCTTGTAGACATGGAGGAGTATGTCCAAGGGCAGCTCCTGAACCATACCGCCAGTCTTACAGATACACAGGAAGAGCTATGGGCTCTGAAAGGACGTATGGGAGGACAGGAGGGCTTCCTGTCAGCCCTGGGGCTCTCTCTTAGCCAGCTGTCCCTGGAGCTCCAAGGGCAGCTTCTGAACCACAGTACCAGTCTTGCAGGTGTGGAAGAAGCACTTGAAGCTCTCAGTGGGCGTATTGGAGTGCAGGAAGGCTCTCTGTCAGACTTTGGTGTCTCTCTCAGTGCTCATCTTAAAGATGTGCGGGGAGAGCTGGGAGCTGTCAGCGAGCGTATTGGAGGACAAGAGGGCTCTCTATCGGCCCTGGGTGTATCTCTCAGCCGGCAGTCCCTGGAGCTCCAGCAACTGAACACCTGTTGCCAGAGCAGCGTGGGGCCGGCCCATGATGCCAGGGACCTGCAGGAGCTCCACCTGGCCCAGAGAGAGGAGCTAAGGGCCCGGCTGGAGGAACTGGGACAGAAGGTGAGGTCCGAGGCAGATCACTGCAGGAACAGGACCGAGGGTGTAGCTCTGGACGTTAAAACTGTAGATGGCCGGGTTGCCAGCTTGGATAACATGTGCAGCAGGCTGGAGCCCATCTCCAGCAGCCTGCACAGGATCAAAGAGGGGCTGAACAAGCACATGACCGGCCTGTGGAACTGTGTCAGCGAGATCAACAACACCCTGCTTGCCCACACCAAGGACATCGAAGGATTGAAGGGAACATATCAGAACCTCCAGGACCACTTCTCAGTCATCACCCAGGACCTCCATCATCTAACCACCAGTCCTGAGAACACTGGCGTtcatggaggtgtggaggagtcTGGTAATCCCACTGAGACCAAGCCTGTCCCTCAGAGCCCTGTCCTGCCCATTGGGCCAATACCAGACGGGGCCCTACCACCACATATGATAGAGACTGGGGAGGCAGGAGCCCCCGGAATCATGATCTCTTCCAAACCGCCCAAGGGGGCTGACGGCAGCATGACCCCCATCAAGGGCTTCGCTGGAGCCCCAGCTTCCCCACCCTCTAAAGGGTCTTTAAAGCCTAATATGCCAGTTATTTCTGTTGCCCACATTCCCCTGAGACCGTCATTACACAAACCATACTTAACTTTAACAGGTGAGCGGGTGTCCTTCTCGGCTGGTCTCAACCTCCTGCCCTTCCCTGGTGAGGTGGGCATCATCCGCTTCAACAAGGTGTTGgtgaatgatggaggacactacGACCCTCACACAGGCATCTTCAATGTTCCCATGGAGGGCCATTACCTGCTGACTGCTGTGCTGACAGCCCAGAGAGGTGCCAGGGTGGAGGCAGTGCTCTCTGTGTCCAACCACAGCATCCAGAGGCTGGACACGGCTGGTTACCTTCCTGCTAATGGTGGCGGAGGTGGGGCTAGCTCCACTAGCTGTGACTGCGGAGGCTCAGCCTCCCTGAGCCTGGTTCTCACTCTGAAGCGTGGGGACAGGGCAGGTTTAGTCATGACCGCAGGCAAACTTGCTATCTCAGAGAACACAGAGGTCCTCTCGACGTTTAGCGCCGTGCTTCTCTACACCACCTCCTCAAAAAGATAACCCCCACCAATGAGTAGCATTATAAAGCTCCAACCTTAAAACACTAGTTCTACTTTAGATGTGGGTATGCCTTACAGGTATTGTAGTAACTCATGATGGTACTTTAAAGCAATCTTATGACAGAGCTTTCATACAAAAATAAATGTGTATCAAATATTTTCTCATAAGATCGTTATGGAGGGAACGGGGCTGGCTACTGCCATTCATGGAGTATTCATATTTAGTGATTATATTCTAAAtgcaacatttttttaaattacatctTTGAATGTATgcttgtgttgatgtgtgtgttcaATTTGTTTACATTTGTTGTACCATTTATTTTAAACCTGTGTAATTTTAGGTATTTGCAAATGACTATTTTTATTGAGGACTATCAATTGTACATAGCATTGTAAGCGGAACTACTGTTAAACAAATAGACTGGTCCTTTTCCTACCTGACAAGGGATGCAGAACTTCAAAACGAGCACAGTTGTTTTGAAAGATCTTTGTATTTCATCACCTCCCAGTGAGTCACAATGTTCTTTAGGAACAATGCCTGAAAATGAACTGTTTTGAATCAGAGAACTTCAATTCTGCCCCTGGTACCAGTAATAAAAGCTTTGTCTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1458406 lncRNA downstream 22756 28292660 ~ 28294131 (-) True G1276912
TU1458376 lncRNA downstream 35071 28279627 ~ 28281816 (-) True G1276887
TU1458385 lncRNA downstream 69115 28246563 ~ 28247772 (-) True G1276896
TU1458351 lncRNA downstream 102859 28205662 ~ 28214028 (-) False G1276872
TU1458441 lncRNA upstream 56693 28392511 ~ 28392785 (-) True G1276947
TU1458442 lncRNA upstream 57854 28393672 ~ 28393997 (-) True G1276948
TU1458443 lncRNA upstream 58374 28394192 ~ 28394507 (-) True G1276949
TU1458444 lncRNA upstream 60435 28396253 ~ 28396649 (-) True G1276950
TU1458506 lncRNA upstream 111775 28447593 ~ 28447800 (-) True G1277012
trnal-uag-3 mRNA downstream 8076 28308734 ~ 28308811 (-) True trnal-uag-3
XM_021562949.2 mRNA downstream 80005 28232133 ~ 28236882 (-) True myl12.1
XM_021562948.2 mRNA downstream 85212 28227285 ~ 28231675 (-) True fastkd3
XM_036944227.1 mRNA downstream 85228 28227285 ~ 28231659 (-) False fastkd3
XM_036944228.1 mRNA downstream 85364 28227285 ~ 28231523 (-) False fastkd3
XM_036944232.1 mRNA upstream 1829 28337647 ~ 28377476 (-) True smchd1
XM_021562966.2 mRNA upstream 223376 28559194 ~ 28565539 (-) False adcyap1a
XM_021562969.2 mRNA upstream 223376 28559194 ~ 28565539 (-) False adcyap1a
XM_021562970.2 mRNA upstream 223376 28559194 ~ 28565539 (-) False adcyap1a
XM_021562967.2 mRNA upstream 223376 28559194 ~ 28565541 (-) False adcyap1a
TU1458397 other downstream 51132 28261540 ~ 28265755 (-) True G1276905
TU1458103 other downstream 226046 28090494 ~ 28090841 (-) True G1276639
TU1458029 other downstream 357453 27959052 ~ 27959434 (-) True G1276566
TU1457301 other downstream 1085408 27228880 ~ 27231479 (-) True LOC110489905
TU1456819 other downstream 1372723 26943295 ~ 26944164 (-) True LOC110489898
TU1458959 other upstream 223493 28559311 ~ 28565513 (-) True adcyap1a
TU1459005 other upstream 365384 28701202 ~ 28703553 (-) True LOC110489947
TU1460464 other upstream 1295207 29631025 ~ 29631768 (-) True G1278860
TU1460659 other upstream 1643357 29979175 ~ 29988516 (-) False dlgap1b
TU1463174 other upstream 3528416 31864234 ~ 31864636 (-) True G1281361

Expression Profile


XM_021562958.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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XM_021562958.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021562958.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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