RNA id: XM_021562965.2


Basic Information

Item Value
RNA id XM_021562965.2
length 1785
RNA type mRNA
GC content 0.49
exon number 9
gene id mettl4
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28377804 ~ 28389529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTCGTTCCGTTTAAGAAAGGTTTTACAACAGAATCGACGTATTGAATATGCCACAGGTTTGGCGAATGCACGTGACGATAGACAATCATCATGGCGGCGCACAGCAATAATGTCCAAGTAGAGAAAGTAGGAAACCCAGCAAAGAAACGAAATGTTACCGTCTCGAATGCAGCACTACAGAGGAGTGAGAATAAAACTACAGTGGATTGTAAACCATCAAAGAAAAGAAAACGAAAATGCAATGATCTGAACCAAGGAGAAATTGATTCATTGGCCTTCCACCACAAGATCAGGTCTGCCATTTTGGAGGGGACCAAATCCTTAGTGGATGCTGGGCTCTCCTGTGAGTACCTGAGTGAGGTCAACGATGCTCAGGAGGGTCCCCTGCCTTCCCACGAATGCAACCTGGCAGCCTTGTGTGACATGGCTAAAGAGCTCCCTCTAGTGAGTGAACATGGAGAGGACCCAGTTCAGTTTATTGAGTCTGAGGATGGCTGTAGTACAACACACCTTGACCTGTTCACACGGATCACAGAGAATTGTATGGACTTTGCCATGGAGGTGATGCTGATGGGAGAGAAATACATTATCCCACCACGATGTGCCTTCCTGCTCTCTGATTTTGCCAGAATGCAGCCCCTGGTTGGTTATGGAAAGTTTTTCGACCTCATTGTCCTGGATCCTCCATGGGAAAACAAGTCTGTAAAAAGGAGTGGCAGGTATAGCTTTCTGCCCTCCTCCCAGCTCAAACGGCTCCCTGTCCCACTGCTGGCCTCCACAGGCTGTGTGGTGGTCACCTGGGTGACCAACAGGCCCAGCCACCTGCGCTTTGTCAGGGACGAGCTGTACCCACACTGGGGTGTGGAGGTGCTGGCAGAGTGGTTCTGGGTCAAGGTCACCAGGTCAGGGGAATATGTGTTTCCACTGGATTCTCCGCATAAGAAGCCTTACGAGGTGTTGGTACTTGGTCGATATCGTGGGTGCGGACACCACTCACACAGCTCTCTGAGGAAGACAGAGCTCCCTATGGAGGAGCAACGTGTGATCGTCAGCGTCCCATCGGCCCTACACTCCCATAAACCTTCACTCTCAGAGGTGTTAAGTCCGTACGTGGGTGCCGACGCCCGGTGCCTGGAGCTGTTTGCCAGAAGCCTGCAGCCAGGATGGACCAGCTGGGGCAACGAGGTGATCAAGTTTCAGCATGTCAGTTATTACACCATGGAGCCCACAGACGAGCCCACAGATACGGCTACAGGATCCTTACATGGAGAgtcctctcctcacttctctctacctcctccaacACCGGACTAATCATCACAGTTTAATAGCATACCGTTGAAGCGTTCCACATCAAAATCCCAATTCGTTTTCATAGTCAAGGAGCCCCtcaaatctctctccctctctccatctcctttgaTCTGTTATTTTCTTTCATTTGGGACTCTTGATTTGTGTTTCTGGGTCGTAGTATGTTGGGGGTGGTGAATCACAGAGCCCATGATGCGATGGAGGGGAGATGAAAGTGCATCGCTCCGGAGCTCAGATCAAGGTTGATGTTTTGAGCTGAAGCTAATAACCTATAGCTCTATGTTCGGTTCAGATACACAACTGTGTGTTACCTCAGAGTGGTGTGTTGTGCATTGATGATGGAGCTATGCTGGCACAATGCCTGGTTTAATAATTGTCAAAGTGTACGTACATGTTTTATGTGCTGAAATGTGTTGGGTAATGTGTATCCATTTAAATCCAAGAGTTGAATAAAGAAACCAaacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1458255 lncRNA upstream 41922 28334858 ~ 28335882 (+) True G1276786
TU1458248 lncRNA upstream 55925 28320980 ~ 28321879 (+) True G1276779
TU1458247 lncRNA upstream 56846 28320408 ~ 28320958 (+) True G1276778
TU1458246 lncRNA upstream 57463 28319967 ~ 28320341 (+) True G1276777
TU1458245 lncRNA upstream 58225 28319207 ~ 28319579 (+) True G1276776
TU1458459 lncRNA downstream 16645 28406174 ~ 28406477 (+) True G1276965
TU1458490 lncRNA downstream 45410 28434939 ~ 28435199 (+) True G1276996
TU1458494 lncRNA downstream 47218 28436747 ~ 28436964 (+) True G1277000
TU1458635 lncRNA downstream 146749 28536278 ~ 28536542 (+) True G1277136
TU1458643 lncRNA downstream 154809 28544338 ~ 28544622 (+) True G1277144
XM_021562961.2 mRNA upstream 61434 28281872 ~ 28316370 (+) False LOC110489939
XM_021562960.2 mRNA upstream 61434 28281889 ~ 28316370 (+) False LOC110489939
XM_021562959.2 mRNA upstream 61434 28283265 ~ 28316370 (+) True LOC110489939
XM_021562950.2 mRNA upstream 96076 28246518 ~ 28281728 (+) False myom1b
XM_036944234.1 mRNA downstream 191094 28580623 ~ 28612037 (+) True LOC110489944
XM_021562976.2 mRNA downstream 248218 28637747 ~ 28698956 (+) False LOC100136716
XM_036944235.1 mRNA downstream 252678 28642207 ~ 28698956 (+) True LOC100136716
XM_021564278.2 mRNA downstream 341547 28731076 ~ 28741476 (+) True LOC110490831
XM_021562980.2 mRNA downstream 367259 28756788 ~ 28777089 (+) True LOC110489948
TU1458201 other upstream 121398 28190186 ~ 28256406 (+) True G1276733
TU1457707 other upstream 523791 27853618 ~ 27854013 (+) True G1276288
TU1456925 other upstream 1275777 27101309 ~ 27102027 (+) True G1275572
TU1456566 other upstream 1415578 26960791 ~ 26962226 (+) True kif9
TU1456117 other upstream 1935417 26440011 ~ 26442387 (+) True G1274830
TU1458658 other downstream 184787 28574316 ~ 28624218 (+) False G1277159
TU1458659 other downstream 184787 28574316 ~ 28624218 (+) True G1277159
TU1458797 other downstream 425837 28815366 ~ 28815810 (+) True G1277279
TU1460985 other downstream 1913504 30303033 ~ 30303419 (+) True G1279349
TU1461105 other downstream 2006338 30395867 ~ 30408017 (+) False htr5ab

Expression Profile