RNA id: XM_021562969.2



Basic Information


Item Value
RNA id XM_021562969.2
length 1428
RNA type mRNA
GC content 0.44
exon number 7
gene id adcyap1a
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28559194 ~ 28565541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATTCGATTCAAGAATAAAAAAGCCGAGGGAAGCAAGTCTTCAGAACAAAAAGTTTCCTCTGTGAAGACAAATGTTTGGCCTCTTTCTCCCGGGGTTGTGTGCATACAGAGATCCGAGAATCGCGTTTTATGTGTGACCGCACGGAGGGTTGGACAAATTGAAGGAGCAACAGGAGGCGGCAGAGACGCTTTCCAGAAGAatcaaggggagagagagagggaaggcgagaaagggagagagagagagactatctCACTCTCCCAGTCGTAGTTGCAACCGGATCGCATACAGCGTCTATTTCGACACTGCAATAGCAGGACAATGTCTAGTAAAGCGACTTTAGCCTTACTCATCTATGGAATCATAATGCACTACAGTGTCTACTGCTCACCTCTCGGGCTTAACTATCCTAACCTTAGACTTGAAAATGAGGTTTATGACGAGGATGGGAATTCGTTACCGGCCTTGGCTTTTGACAGTGATCAAATTGCTATAAGAAGTCCCCCGTCTGTGGCTGACGATTTGTACACTTTATACTACCCACCGGAGAAAAGAACGGAAAGGCATGCAGACGGAATGTTTAATAAAGCCTACAGGAAAGCGCTGGGTCAGTTATCAGCAAGAAAATATCTTCATTCTCTGATGGCAAAGCGTGTAGGTGGAGGGAGCACCATGGAAGACGACACAGAGCCTCTGTCAAAGCGACATTCGGATGGGATCTTCACAGATAGCTACAGCCGCTACCGAAAGCAAATGGCAGTCAAGAAATACCTGGCGGCAGTCCTTGGGAAAAGCCCTGAAGACTTAGGTTTTCACCATATTCTACAAGACATAGACTTTGATGCCCTCCCGGATGGGGATGAGTTTGAGGCTATTTTGGGAGACTGGCTGAAACAGTTCTCTCCCGAATTTCCGGCTTTGTGACGCAGGATGCAGCTTGCGGCTGTGGTGCCTTGCTCCGACTTTAAAATCGCCACGAATCACAGATGGCTATTTAGTAGCCCTACAATGCTGCACATCATCAGCTTACATTTCACCCTTtggttgttgtttttgtgttgcGCAGACATTTGATTGGATCTTTAGTGCCATTCGGTGTAGTCTCCGAGCACTCTTGCTCGCGATCATTTCTTTTGgggtttttttttcatttttttttagagCACATAGACTTAGATAATTGTGATAGATAGTTGCAAACATCATGATTGCCCTCTCTCCATAATGTGTATCATTTTGAAAGCGCCAACAGCCTTACTAAACGTGAAGATTAAActtaaaacatatatttattgTGTAGAAAATTGATATTAGAGAGTACTATTGtaatgaagaagaaaaaatggCGAACCCGCAAGGGTCAAGTctataaatgtttaaaaaaaaggtgTTGTAAGATTTGTATGAATaaatttttgtaaacaaca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1458945 lncRNA downstream 23026 28535873 ~ 28536168 (-) True G1277425
TU1458939 lncRNA downstream 29305 28529675 ~ 28529889 (-) True G1277419
TU1458597 lncRNA downstream 52762 28506222 ~ 28506432 (-) True G1277101
TU1458506 lncRNA downstream 111394 28447593 ~ 28447800 (-) True G1277012
TU1458444 lncRNA downstream 162545 28396253 ~ 28396649 (-) True G1276950
TU1458994 lncRNA upstream 58152 28623691 ~ 28717648 (-) True G1277467
TU1459072 lncRNA upstream 164821 28730360 ~ 28730687 (-) True G1277539
TU1459085 lncRNA upstream 178376 28743915 ~ 28744248 (-) True G1277552
TU1459087 lncRNA upstream 180227 28745766 ~ 28746478 (-) True G1277553
TU1459008 lncRNA upstream 185152 28750691 ~ 28751365 (-) True G1277478
XM_036944232.1 mRNA downstream 181718 28337647 ~ 28377476 (-) True smchd1
XM_036944231.1 mRNA downstream 223373 28316887 ~ 28335821 (-) True emilin2b
XM_021562958.2 mRNA downstream 223376 28316887 ~ 28335818 (-) False emilin2b
trnal-uag-3 mRNA downstream 250383 28308734 ~ 28308811 (-) True trnal-uag-3
XM_021562949.2 mRNA downstream 322312 28232133 ~ 28236882 (-) True myl12.1
XM_021562975.2 mRNA upstream 50928 28616467 ~ 28619751 (-) True tyms
XM_021562974.2 mRNA upstream 54299 28619838 ~ 28632520 (-) True LOC110489945
XM_021562977.2 mRNA upstream 135638 28701177 ~ 28724125 (-) False LOC110489947
XM_036945531.1 mRNA upstream 252300 28817839 ~ 28818590 (-) True LOC118938886
XM_036944251.1 mRNA upstream 401892 28967431 ~ 28976889 (-) False nsun6
TU1458397 other downstream 293439 28261540 ~ 28265755 (-) True G1276905
TU1458103 other downstream 468353 28090494 ~ 28090841 (-) True G1276639
TU1458029 other downstream 599760 27959052 ~ 27959434 (-) True G1276566
TU1457301 other downstream 1327715 27228880 ~ 27231479 (-) True LOC110489905
TU1456819 other downstream 1615030 26943295 ~ 26944164 (-) True LOC110489898
TU1459005 other upstream 135663 28701202 ~ 28703553 (-) True LOC110489947
TU1460464 other upstream 1065486 29631025 ~ 29631768 (-) True G1278860
TU1460659 other upstream 1413636 29979175 ~ 29988516 (-) False dlgap1b
TU1463174 other upstream 3298695 31864234 ~ 31864636 (-) True G1281361
TU1463176 other upstream 3299750 31865289 ~ 31866137 (-) True G1281363

Expression Profile


XM_021562969.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_021562969.2 Expression in each Bioproject

Bar chart with 16 bars.
XM_021562969.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.