RNA id: XM_036944237.1


Basic Information

Item Value
RNA id XM_036944237.1
length 4932
RNA type mRNA
GC content 0.50
exon number 30
gene id LOC110489949
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28795080 ~ 28812062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGATACACATCGGCTGGATTAAGGGGGCAGCATCCATGTCTCTGTGTCACTGTTCTTCCTTGAGAGACACCTGAATACACCACAGCcagatccctctctcctctctggactGTACAGCTACTTTACATCACCTTTTCGCCTTGGGATAGCAAACTATGCACTAGCTACGATGGCATCCAGTCCATCCCTCGCTGTGCTCCTGTGCCTTATGCATGCTCTGCGCTGCATTGCTGAGATAGACAGCAGCTCCTTCTTGATCTACAACCAGGATCACAACAAGTGTGTGGTGGCGGTGAGCGCCAATCAAGTCACAGTGGCTCCCTGTGACCACACGTCCCAGAACCAGCAATTCCGCTGGGCCTCACAGTCTCGTCTCCTCAGCATCTCCCTGAAGCTCTGCCTGGGGGCTCAGGACCTGAAGGACTGGGTCAAGGTGCTGCTCTTCCCCTGTGATGAGAAGAGCGAGCTCCAGTACTGGCAGTGTAAGAACGAGACCCTGTTCGGCCTCAAAGACAAGGCGCTGCACTTAAACTATGGCAACCGCAACGAGAAGAATATGATGATCTACCAGGGATCTGGGTCTTGGAGCTGTTGGAAGATGTATGGTACTCAGAAAGACCTCTGCTCCAAGGGCTACCAAGAGGTGTTCACACTAGGGGGGAATGCATTTGGAAGTCCCTGCCAGTTCCCCTTTCAGTTTGGGGAGAAGTGGTATGCTGAGTGCACTCCGCAGGGGCGCTCAGATGGACAGCTCTGGTGCGCCACAGAGACAGATTACAATAAAGCCAAGAAGTGGGGCTTCTGTCCCTCGAAATCGTCCTCGGGATGGGACAGTGACCCAGTGACAGGTGTCCTGTACCAGAGGAACACCCAGTCTGTGTTGACCTGGCACCAGGCGAGGAAGAGCTGCCAGCAGCAAGGAGCCGACCTGCTCAGTATAGTAGAGCTCCACGAGCAGACCTACATCTCAGGGTTGACCAATATCCTGGGCACATCTCTGTGGATTGGACTGAATAGCCTAGACTTTGAGGCTGGATGGCAGTGGagcaatggaaacccattcaGATATTTAAACTGGGCCCCAGGACATCCATCAACTGAACCCGGGCTCAGCTGTGCAACCCTGAATGCTGGCAAGGCCTCGAAATGGGAGACCAATGAATGTTCCAAGAAGCTGGGATATATCTGTCGCAAAGGAAACTCCACTGCTCTGGCCTCTGCCCCTATAGTAGGAAAAGATCAGCCCACCTTCTGCACCAGTCACTGGATTCCCTATGCAGGCCACTGCTACTACCTACAACGTACCAAGAAGATGTGGAGGGATGCCCTGGCCGCCTGCCACAAAGATGGAGGGGACCTGGCCAGCATCCACAACATAGAAGAACAAAGCTTCATCATCTCTCAGTCAGGATATACGGCCACAGATGTGCTGTGGATCGGCCTGAATGACCAAAGGAACGCATTGCTGTTTGAGTGGACCGACCGATCCCATGTGACATTCAGCCACTGGCAGACAGGGGAGCCCTCTCACGGTGCCAACCTCCAGGAGGACTGTGTCCTGATCAGAGGAAAGGATGGGAAGTGGgctgataatttgtgtgagaagACCTACGGGTACATGTGTAAGAAAAAGGCCTCCACCAAACCGGTGGCAGGTGCCCCGGAGGAAGATAGTCCAGGATGTAAGCTGGGCTGGATCCGGTATGGTTCTTACTGCTACAACGTTGGATCagaaaccaaaacatttgatgaaGCCAAGCAGACCTGCCAGCAGAGTGACTCAATCCTGGTGGAAGTGGCTGACAGGTATGAAAATGCCTTCCTGGTCAGTTTGGTGGGTTTGAGGCCGGAGAAGTACTTCTGGAGTGGACtttccaacatggcggatatagaCACGTTCAAGTGGACTACCAGTTCGGAGGTCAAGTTCACCCACTTCAACGTGGGCATGCCAGACAGAAAACAAGGCTGCGTAGCTATGACAACTGGAATGTTTGCTGGTCTGTGGGATGTGGTCAGCTGCAGCAACAAGGAGAAGTACATCTGTAAGAAAATGGCGGAGGGCGTCACATCAACAATGGCCCCTCGCACCACCCCGGCACTGAGCTGTCCTTCTGGGTGGTCACCTGCTGCTAAAAGGAATGTCTGTTACAAGCTTTACAGAAAAGAGACTGAAAACAAGAAGTCATGGTCAGAGGCGCGGGAATTCTGCAAGGCCATTGGTGGTGATCTGATGAGCATTCACAGTGCCACAGACCTGAACGGCTCTCCGTATCATTCCTCTGATGCAGCCTGGATCGGCCTCAGCAATCTGGATCCCTCCGCAGGTTTCGTCTGGGCTGACGGATCAGCATTCAGCTATGAGAATTGGGGATTTGGAGAACCAAACGACTACAACGATAATGAAAAATGCGCAGAGGTCCAGTTTTACTACGGACGCCACTGGAATGATCGACACTGTGATGCCTACAATGACTGGATTTGCGAGATTCGCAAAGGGGTTACCCCAAAGCCCCATCCCACTCAAGTTGAGCCAGTGTACAACACTACAAAGGACGGCTGGATTGAGTACAACGACACTCAGTATTTCTTCAACACTGAGAATCTCCCCATGGACGAGGCGAGAGAATTCTGTAAAAAGAACTTTGGTGACCTGGTGGTCATCActgcagagagcgagaggaagttTATATGGAAACAGATATCTAGAGGATCCGAGGGACAATATTACATTGGAATGACCGTTGGTTTGGATAAGTCTTTTAGCTGGTTGGATGGGTCTCCTGTTGTGTTTACCGCGTGGGATCAAAACGAACCCAACTTCGCCAACAACGATGAGAACTGTGTGACGATATACAAGAGTATGGGGTACTGGAATGACATCAACTGTGGCGTAGAGCTGGCCTCCATTTGTAAAAGAACCACCAGTTTCACTAACACGACCATGGCCCCCACCACTGTACCCAAGGGAGGATGTGCCCCAGAATGGATTGCTTTCCAGGGGAAGTGCTACAAATTCATTGGAGACAGCGATAAGAAGCCGTGGCAGGAGGCCAGGACCTACTGCATCAACCAGGGAGGGAACCTGGCCTCTGTCCTCAGCGAGAAAGAGCAAGCATTCCTTACCACCCAGATGCTTGGGAATCCTCAGGACATTTGGATAGGACTGAACGACGTCAACTCGGAGATGAGCTTCCTATGGACGGAGGGGAGAGGTGTTTCCTATACCAACTGGGCAAAAGGGCATCCAACGTCAGTGCCAGACGGACGATATTCATTTTTGGAAGAGGTGTTTGACTGTGTGGTTCTGGTGGGCAGCTCTCAAAAACAGACAGGAATGTGGAAGGTCGAGGACTGCTTAGTATCCCGTGGTTTCATCTGCAAAAGGAATATTGATTCTCAGATTGTGGTCCCTGCCACCACAGAGTCAACGAAGACGTTCTACAAGCTGGGAAATGACTCCTTCAAACTGGTGGTCCAGAAGATGAACTGGGACGAGGCCCGGAGGCAATGTAAAGCAGACGATGCTGAGATGGCTAGCATCCTGAACCCCATCACCCAGGCCTTCATCACAATGCAGAGCCACAAATACAATGAGCCCATGTGGATCGGCCTCAACAACAACTTGactgAAGGGCATTTTAAGTGGGTGGATAACTGGCCTCTATCTTACACCAAATGGGGCGTAGATGAGCCAAAGAACAATATTGCCTGTGTTTACATGGATACAGACGCCAAGTGGAAGACAGGCGACTGTAGTAACACCTACTCCTCACTGTGCAAGAGATCACCAGACATAGCCCCCAGCCAGCCCCCTCAGCTCCCTGGCAACTGCCCCGAGCCCAAGAAACGCAAGACGTGGGTTCCCTTCAGGGGTTACTGCTACGCCTTCCTCAACTCTGTGGTGGACAACTGGGCCCACGCCACTGTGGAATGTCTCCGAATGGGAGCATCCCTGGTGAGTgtcgaggatccattggaggccAGCTTCATCCAGGAGAACCTTGAGCTACTGCAGGATGGATCCAAGTCATTCTGGATTGGCATGCACAAAAGCCACGAAGGTGACTGGATGTGGATTGACAACAGTGTGGTGGACTATACCAACTGGAAACAAGGGATGCCAAAGAGTGGAGAACAATGTGTGGAGATCCAGTCAAATAGTGGTCTGTGGAGCACTAACAGCTGCAACCGGTACAAGTCATACATCTGCAAAACAGCCAAAGTCATCACACCAACAGAGAAGCAACCAGTTGCTGCTCCCCTAGTGGAGGAAGCTCCCCATGGTTATGCCGGCATCGCTGTGGCAGTCGTCTTGGTGATAATCACAGTGGTAGGACTCGGTGCCTTCCTACTCCGCAAACGGATACCTACCCCCGTCCTGGGAGAGTGTACTTTCGACAACACCTTGTACTTCAACAACCCCATCCGCCCAACAGCCACTGTGGACACCAAGGGCCTGGTGGCCAACATAGAGCAGAACGAAACAGCTTAGACGGGACACAAAGAACCACCAACAGGTGAAAACACTCTTGAGACAAGTTTTGATATGAAAAATACCCCAAAAGCATGCTGCTGGTGTTAAGGCCTACCAATTCTGAGATTGCAACTAAATCTGAAACCATTCACGTATTATCTTTGTTAATTTTCTTGCTCTGTAAATAATGGGTAAAAATTATATGCACTTTGTGCATATCAGCATCAGTTGTCAAGGATACAGTCCAGATGTACAGCCAAGACTGCATATGCAACCCCTGCACAAATTATAGAATCAACAACAGTCATTTTGTTTGGTTTAAAGGAGCCTTGTACAGATTTATTTGGTGTGTGAAACTAAAGTTCAAAATACAACCACTGTACTTTGCTTTGTTTTTGCAAAGTTATATTGTAAATATATGCTCAAAGAGAGAAATAAAGTTTTGAAACAAA

Function

GO: NA

KEGG:

id description
K06560 MRC, CD206, CD280; mannose receptor, C type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1458692 lncRNA upstream 91972 28701203 ~ 28703108 (+) True G1277186
TU1458684 lncRNA upstream 163915 28626587 ~ 28631165 (+) True G1277178
TU1458679 lncRNA upstream 168748 28625505 ~ 28626332 (+) True G1277177
TU1458676 lncRNA upstream 174371 28619969 ~ 28620709 (+) True G1277174
TU1458627 lncRNA upstream 178399 28614402 ~ 28616681 (+) True G1277128
TU1458794 lncRNA downstream 113 28812175 ~ 28812749 (+) True G1277276
TU1458795 lncRNA downstream 1121 28813183 ~ 28813383 (+) True G1277277
TU1458799 lncRNA downstream 6655 28818717 ~ 28819012 (+) True G1277281
TU1458801 lncRNA downstream 9861 28821923 ~ 28822261 (+) True G1277283
TU1458802 lncRNA downstream 10305 28822367 ~ 28822601 (+) True G1277284
XM_021562980.2 mRNA upstream 17991 28756788 ~ 28777089 (+) True LOC110489948
XM_021564278.2 mRNA upstream 53604 28731076 ~ 28741476 (+) True LOC110490831
XM_021562976.2 mRNA upstream 96124 28637747 ~ 28698956 (+) False LOC100136716
XM_036944235.1 mRNA upstream 96124 28642207 ~ 28698956 (+) True LOC100136716
XM_036944234.1 mRNA upstream 183043 28580623 ~ 28612037 (+) True LOC110489944
XM_021562982.2 mRNA downstream 14518 28826580 ~ 28837296 (+) False LOC110489950
XM_021562983.2 mRNA downstream 14518 28826580 ~ 28837296 (+) False LOC110489950
XM_036944238.1 mRNA downstream 21000 28833062 ~ 28837296 (+) True LOC110489950
XM_036944239.1 mRNA downstream 39099 28851161 ~ 28963361 (+) False cacnb2a
XM_036944241.1 mRNA downstream 39099 28851161 ~ 28963361 (+) False cacnb2a
TU1458658 other upstream 170862 28574316 ~ 28624218 (+) False G1277159
TU1458659 other upstream 170862 28574316 ~ 28624218 (+) True G1277159
TU1458201 other upstream 538674 28190186 ~ 28256406 (+) True G1276733
TU1457707 other upstream 941067 27853618 ~ 27854013 (+) True G1276288
TU1456925 other upstream 1693053 27101309 ~ 27102027 (+) True G1275572
TU1458797 other downstream 3304 28815366 ~ 28815810 (+) True G1277279
TU1460985 other downstream 1490971 30303033 ~ 30303419 (+) True G1279349
TU1461105 other downstream 1583805 30395867 ~ 30408017 (+) False htr5ab
TU1461526 other downstream 2132109 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 3184105 31996167 ~ 31996513 (+) True G1281462

Expression Profile