RNA id: XM_021562983.2


Basic Information

Item Value
RNA id XM_021562983.2
length 2988
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110489950
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 28826580 ~ 28837296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCGGAGCACTATAAGGCAGGGGAACTGGCAGCTAATCCTCAGGAGCTTACACAATTCTTACTTCTTCTCATAAGAGGTTTTTACCGATGCAAGGGATTCTCCGAAAACAACACAAACCCTTCCTCTCCATCCACCAGAGTGAGAAAACAAAAGGTAGAGAGGGAAAAACGCCCTAAGTCAGTGGCAGGGGTCCCAGCAGGGAGATGGGGGTCCCAGGTGGGACCATGCGGTTCTGGAGCCATGCTGTCCCCACATTGCTCCTTCTACCCCTGTGTCTGCTGGGGAGGATCGTGGAGGGCCAGGCCCCAGAACAGGGCAAGGAGAGGGGCTACCTGCAAGAGGCCATCAAGGCTCTACAACTTGGTTCTCAGACCCAGCTCCAGAGGGACCAGACAGGGTTCCTACTCTCCACTGTCCTCCAGGCTGTGCACTGTGCAGAACGGATTGGGGGATCACAGGAGCTCTGTGACAAGTGCCTCACTCCAGACCTTGTCCTCTCTGTCCTGGAGGATGATAGGAAGGCTTACCTCACCGAGGATGACTACCATAGAGTCTCCACCGTTTTGCTCTACTACATGATCAACATGGAACACCTGTGTGCCACcaacccctccccttcctccttttcctcctcctccttgtcacCTAGCTACCAGTACTACCTTCTGGCCCTGACCAACCTCCAACCTACAGAAGAAAGAGGCTTCCTCTCCTCCAATGAGATAGAGAGCATTCTGCAGCTCATCAACCAGAACTATCAACCACCTGCTCTAGAGACATCTGGCTCCTCCCACTCACAGTGTATCGATGCCTCCCATCTACTGGATGAGTTGGGGATCACAGATAGCCAAGgtgctgatccatcctcagtggCCACACTGTCTGCAGCCATCATCACCCACACCCTGCAGGGCCACTGTTTCAGCAAGAGGAACCTGCCCTCCCCTGCCTTCTTTACAGATTACATCTTCCAGTCCCTCAACCGCACCAGCAACCTACATGTCAGGGATTTGGAGGAGCTGCTGCACCAGCTTGGTGTGGGAGGTGGTAGTGGAGGGGCCTATCACTCACACTGCAGGGAGAAGCAGAGCAACACAGGCCCCTCCCATATAGGGTGTGTCCATGAGCTTTTGGGGATCAACACAGACTGGACACAGGTATGCTACTCAGCCAATCAGCTGGTGGATATTTTTGTTCTGGATCCGCATTTGCATATTTCCCGGGATCACTTCAAACAAATCTGCCCAGCTGTTATCCAGCAGTTGCTAGGGAATGCCTGTGAGTCCACAGAGCCAGCTCCACGAGGATCTCCACCCAGTGCCATTGAGAAATATGGCTACAGTACGGCTGCTGTGTTACTCATCACTGTGGGCTCCATGTTGGGCATCTGCCTGATCTTCTTCAACTCCTGCCAGGAGACCTACGCCCTCATCCTGCAGCTCTTTGTGGGCCTGGCCGTGGGAACCCTCTCAGGGGACGCCCTCCTGCACCTCATACCACAGATCCTTGGCCTCCATGACGACAGTCACCATTACGATCATCACTTTACTGAGGGAAAGGAATATCTGTGGAAGATTTTGGGAATCATCGCTGGAATCTACGGCTTTTTCCTCATCGAAAGGATCTTCTCCCTTGTGATGCCATCACATGGCCATGGTCACGGGGGCCTGGGCAATTCCCATGACCTCCCCCTGGAGCTCAACTGCAACGGCCAGTCACAGAGGGGCATGTCTATCTCAACCATGCAGCTGGGAACTGTGGAGGACTTAGAATGCACAGAAATCCCATCAGAGGAGGCTGAACCAAGAACCCCTACGCATCAGACGAGACAGGGTATTCCTGTACTGGCTGTGATGGTAATCGTGGGAGACAGCCTCCATAACTTTGCTGACGGCCTGGTGGTGGGGGCGGCCTTCTCCTCGTCCACCGAGACAGGCATGGCGACCACCGTGGCCATCCTCTGCCATGAAATCCCTCATGAAATGGGTGACTTTGCGGTGTTGCTAAGCTCAGGTCTCTCTGTGAGGAATGCAGTGATGATGAACCTCCTCAGTGCTCTGACGGCCTTCATCGGCCTCTACATCGGCCTCTTCGTCTCCTCGGAGCCAGAGGTCCAGCAGTGGATCTTCACCGTTACTGCGGGGATCTTCCTCTATCTGTCGCTGGTAGAGATGCTCCCAGAGATGAGTCGTGTGAAGACCAACAGGCCCTGTATCATGTTCCTCCTGCAGAACCTTGGTCTCCTAATGGGCTGGGCCTGTCTTCTGCTCCTTGCACTGTTTGAGCACAAACTTAAGTTTTgatgacaggacacacacacatcctactaTGGTATCTGCCATGCAAATATGTAATTGATGGCAATGTTGATGGTACTTTGTGGTCttgcttttttttgttgtcattttGACATCTTgtttattgattactgcattattTACTGACACACCATATGAAGACCGTGAACAGCACATTTAAAATGTCACAAGCAAGAAACATTTCACAAGTGACCGGATAATAGAGTGACGTGAATAGTAGCAGTGACGATGTGAATCAAATGTCATTTTAGATCCAGTGGTTACGCATAATGTGTTAGAGCTGGATGAATCCACTTTTGTATGAATCGGATGCCTAAATGTGATCTTTAGGACATGAACACATCTTCTGTGTGATGATTTATTTTTGTATGGCGTACTGTGTCACATAGGGCACATAGCTAGCTTGCAGTCTGTCTGTCACATCTATGTCTGGACATGATAGTGTCAGATGTCTAGTCTACAGTGCCAGACGAGATCTTTGTATACAGATACCTTGCTTGTATGTGTATATTTGCCATGAAATACAGTGtctccagaaagtattcagaccccttgactttttccacattttgttagtttagagccttttttctaaaattgattaaattgatggtttttatcatcaatctacagtcatggccaaaagttttgagaatgacccacatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1458802 lncRNA upstream 3979 28822367 ~ 28822601 (+) True G1277284
TU1458801 lncRNA upstream 4319 28821923 ~ 28822261 (+) True G1277283
TU1458799 lncRNA upstream 7568 28818717 ~ 28819012 (+) True G1277281
TU1458795 lncRNA upstream 13197 28813183 ~ 28813383 (+) True G1277277
TU1458794 lncRNA upstream 13831 28812175 ~ 28812749 (+) True G1277276
TU1458726 lncRNA downstream 86270 28923566 ~ 28966144 (+) True G1277212
TU1458915 lncRNA downstream 178007 29015303 ~ 29015534 (+) True G1277396
TU1458916 lncRNA downstream 178441 29015737 ~ 29015958 (+) True G1277397
TU1458919 lncRNA downstream 180946 29018242 ~ 29018608 (+) True G1277400
TU1458927 lncRNA downstream 189780 29027076 ~ 29027307 (+) True G1277408
XM_021562981.2 mRNA upstream 14518 28795080 ~ 28812062 (+) False LOC110489949
XM_036944237.1 mRNA upstream 14518 28795080 ~ 28812062 (+) True LOC110489949
XM_021562980.2 mRNA upstream 49491 28756788 ~ 28777089 (+) True LOC110489948
XM_021564278.2 mRNA upstream 85104 28731076 ~ 28741476 (+) True LOC110490831
XM_036944235.1 mRNA upstream 127624 28642207 ~ 28698956 (+) True LOC100136716
XM_036944239.1 mRNA downstream 13865 28851161 ~ 28963361 (+) False cacnb2a
XM_036944241.1 mRNA downstream 13865 28851161 ~ 28963361 (+) False cacnb2a
XM_036944242.1 mRNA downstream 30289 28867585 ~ 28963361 (+) False cacnb2a
XM_036944243.1 mRNA downstream 58475 28895771 ~ 28963361 (+) False cacnb2a
XM_036944240.1 mRNA downstream 74189 28911485 ~ 28963361 (+) True cacnb2a
TU1458797 other upstream 10770 28815366 ~ 28815810 (+) True G1277279
TU1458658 other upstream 202362 28574316 ~ 28624218 (+) False G1277159
TU1458659 other upstream 202362 28574316 ~ 28624218 (+) True G1277159
TU1458201 other upstream 570174 28190186 ~ 28256406 (+) True G1276733
TU1457707 other upstream 972567 27853618 ~ 27854013 (+) True G1276288
TU1460985 other downstream 1465737 30303033 ~ 30303419 (+) True G1279349
TU1461105 other downstream 1558571 30395867 ~ 30408017 (+) False htr5ab
TU1461526 other downstream 2106875 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 3158871 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 3850262 32687558 ~ 32698036 (+) False G1282302

Expression Profile