RNA id: XM_021563014.2


Basic Information

Item Value
RNA id XM_021563014.2
length 2566
RNA type mRNA
GC content 0.47
exon number 3
gene id tgif1
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 29969944 ~ 29976086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGAAATAGCCTACTAATGAGAAGTAACCTAATGCTACGGTTGTTGTTTTGAACATTAGGCACTAAAACTGCCGCAAGATCTGCAATGCCATTCGCTTCCATACGTATTTAAATTATACTCCTACATTTGTAACGTAAAAGTAGAATATATTCTAGCCGTTGATCGGTGAGATCGTGTTTACGTCGATGCAAAAGCCATGCTGTCAGAGATTTTGGCTCTTTCCTCTAAAGTGGGAGGATCTTTGTGCTTTTGAGTCACGCAGCTGTCAAAGATAGCTGTCACCCAGTTTCATGATCAAACACACATTGAATGAGAAAGGTTTCGCCAAGTCGAGCAGCGGATTTCAGGTAGCTTACTCCTGGTTAAAGTACTACGTCTCAAACAAATGAAAAAGCCGACGAACGGTTCTACAAACGAAAATAAATCAATGAACAAAACCATTTGGAATATACGTGTGGAATATCCCGAGAAAAAGATTTACCGCTAAAGGAATAGAATTCGAGAGAAAAAAAGGCTACTGCGCTCCTCTCGTGGCCAACGTGAAAAGGGGATTTTTGACGGACATGAAGACAAAAAAGGGCATGATGACGTTATCTGGTAGTGAGACGGACGACGAGGACAGCATGGATGCCCCCCTGGACCTGTCATCCAGCACAGGAGGTAGCAGTGGGAAGAGGAAGAGGCGCGGGAATCTACCCAAGGAGTCGGTGCAGATCCTCAGGGACTGGCTCTACGAGCATCGCTACAACGCTTACCCCTCTGAACAGGAGAAATCCCTGCTCTCAAAGCAGACTCAGCTCTCCACACTACAGGTGTGCAACTGGTTCATCAACGCGCGTCGTCGGCTCCTCCCGGAGATGCTGCGGAAAGACGGTAAAGACCCCAACCAGTTCACCATCTCCCGGAAGGGCCGCAAGGGAGACGACGGGGGCTTCTCTGAATCCAGCTCCCAGTCACCCAAGCACGCCACAGCCGCCACGGGCCCCGAGGACAGCTACGACCAGCGGGCACTGCACCCCTCAAGCTTCGAGGCAGGCCTCCCTAGCCCCAGCGTCCTGCAGAAGGCCATATCATCCCCTAAGatgtctccttcctcctccccggGGCCCGCCACCACAGTGCCCCGCCGGCCCTCCGTCATCCGTCACACCACTGTCAACTCCACTGTGATGCAGAAGCAGggctccagcctccctccctcctccctctcctacttCCTCTCCAGCAGTAAAACAGACCACAGTAGGGCTGCAGAGCTGCTGCGTTCCACCACAGAGGCTCTGGTGCTCTTCAGATGCCAGGAGGAAGGGCTGGGAGCCCCGGCAGTGACCACCACCACAGAGGGTAACCTGAGCCCCCAGAGTGGGCTCTTCAatacccctccccccacccctccagaCCTCACCCAGGACTTCAGCGGCTTCCAGCTCCTAGTGGATGTGGCCCTCAAGCGGGCGGCAGAGATGGAGCTGCAGGCGAAACAACTGGTGTCTTAAAGAGAAAGTGGAGGGGAAGATGTTGTCCCTAACGGAACTCCTAGCATGAGTTTAGTGGCTGCGTAACAAACACAAAAAGCCTGATTATTTCTATTTTTGGTATACAAATCATAAATGAGGATTGTTTTTGTACAAAACTGTATCAAGGTGCCTTGGCTGTTAgttattttttactttgtcataTATGCGTGTATGTAAGTATCTGTGTGTCTTTTGCAGACGGGACCAAAACAAATATTGACAGACACAAAAAACCCACTTTCTGTCTTAACTTTTTCCTATGGATTTTAGTAGAGCAAGCAAGGCATGAGGGCGTACAAGTGTTCTGCGGATGAGACAAGAGGGTGgttctcttctcctccacacagatCCAATCCCCCGTGATAGGATATGTAGTTTCCAGATGTGTTTTTACATTTCAGAGATAAGTTTGCGATGGCTCCCACTCGGACGTTCGCACAATAGGGCCGAGTTAGGGTCCTCATCTCAGTGTCTTAAAGCATACTTTGTTCTTGGCATCGATGATTGATCAACGTTATCACTACTGTAGTAATAAGTGTTCCGTGTTTTTTTTCATGATAAGGTTATAGTTTTCTTATCCTTCATTTGATATTTTAAAAGAAAGTAAACCTCTCTTTTTGGTTTTGATAAAGCGGTTTCCTATACTGCTTTATCAATATCAGATGAACAATGTAGCAGGTTCCTAGTCCGAGCCTTCCTCCTCACTGCGTGGctaccccaaatggcaccctattcccgattttatagtgcactatatcgggaatagggtacaatttgggacATGCCACGAGTAGCGACGGCCAGTGAATTTCAATTGTAAGAAAAACACTAAGATTTTGTTTTTTCATTTGTGATGTCACCAGCAGCGGGAACAGTAGAGCATTTTCTAAATCACCAAAAAGCGTTTTATGTACAAAAAAAGGACCATGTTTATGTATAGCTAATGTGACACAATGCCCAATGATGTGATTTCTTTTCATACTGTGCAATGTTTGTGGCAAATAGGGGTCACACATGGGATTTAAATAAAGTTTTGTTTTCTACATA

Function

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process
GO:0007420 brain development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K19383 TGIF1; homeobox protein TGIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1459990 lncRNA upstream 4279 29948758 ~ 29965665 (+) True G1278401
TU1459983 lncRNA upstream 37236 29932479 ~ 29932708 (+) True G1278396
TU1459976 lncRNA upstream 43500 29926171 ~ 29926444 (+) True G1278389
TU1459956 lncRNA upstream 61758 29907958 ~ 29908186 (+) True G1278369
TU1459952 lncRNA upstream 72447 29897134 ~ 29897497 (+) True G1278365
TU1459958 lncRNA downstream 1245 29977331 ~ 29979103 (+) True G1278371
TU1460060 lncRNA downstream 80415 30056501 ~ 30069993 (+) True G1278468
TU1460064 lncRNA downstream 83465 30059551 ~ 30059969 (+) True G1278471
TU1460109 lncRNA downstream 136233 30112319 ~ 30114236 (+) True G1278514
TU1460984 lncRNA downstream 326586 30302672 ~ 30302880 (+) True G1279348
XM_021563008.2 mRNA upstream 273993 29689717 ~ 29695951 (+) True LOC110489968
XM_021563004.2 mRNA upstream 305023 29657968 ~ 29664921 (+) True ackr4b
XM_021562999.2 mRNA upstream 337125 29604655 ~ 29632819 (+) False si:dkey-12l12.1
XM_021563017.2 mRNA downstream 353724 30329810 ~ 30345566 (+) False LOC110489977
XM_021563018.2 mRNA downstream 353724 30329810 ~ 30345566 (+) True LOC110489977
XM_021563020.2 mRNA downstream 419731 30395817 ~ 30416375 (+) False htr5ab
XM_021563021.2 mRNA downstream 419731 30395817 ~ 30416375 (+) False htr5ab
XM_021563023.2 mRNA downstream 505931 30482017 ~ 30496207 (+) True insig1
TU1458797 other upstream 1154134 28815366 ~ 28815810 (+) True G1277279
TU1458658 other upstream 1345726 28574316 ~ 28624218 (+) False G1277159
TU1458659 other upstream 1345726 28574316 ~ 28624218 (+) True G1277159
TU1458201 other upstream 1713538 28190186 ~ 28256406 (+) True G1276733
TU1457707 other upstream 2115931 27853618 ~ 27854013 (+) True G1276288
TU1460985 other downstream 326947 30303033 ~ 30303419 (+) True G1279349
TU1461105 other downstream 419781 30395867 ~ 30408017 (+) False htr5ab
TU1461526 other downstream 968085 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 2020081 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 2711472 32687558 ~ 32698036 (+) False G1282302

Expression Profile