RNA id: XM_021563017.2


Basic Information

Item Value
RNA id XM_021563017.2
length 2162
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110489977
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30329810 ~ 30345566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGATCTATCTATGATTTGTGGAGATAGCACTGAGTAGCAGACGGACCGTCCTGAATACGGTGAACCTAATGCGTGCTGCGTCCACCTACTCTCCTGTGTGGGAGCAACTGGGGACAATCTTTTGAATACTTTTTCCACAGAACATCCTGGAAGGTGTATCCTAGACGGGATTAACCGTATTTCAGGGCCACCACAGTAAGATACTGACCATGGGAGATTGCATCTCAGTCCGTGCTCTGCTAATGCTTCTGGCCCTAGTCAGCTATCTAATTGCACTGACATTCAACATATTGGCTCTATTTGGGCCCTGGACAGGTGCTTTCATGCAAACCACACAGTATGTACTGAGCAAGTCCACAACGCACCTAACCCCAGATAGATGGGTACTCTTTCTATGGGATGTCCTTAACATCTGGTTGATTGGCATGTTCATCTATCTGATACACAATCTCCGTAGAAGGGAAGCTTATACATGGATGTACACCACTCCTGCTGTCCTGCCCTATGGATTCTACTTGTCCTGGATCGTAAATAGCATGTTGAATATGGCATGGTTATTTCTGTACGACAAAGACTTCTGTGTGTGTCATAGAAAGATGGTGCCAACGCTCCTGATCACAGCATTACAGGCCATCTCAAATTGCGTGATTATCATGTTCTCCTGCTGCGGACTGGTCGTCTATGGAGCGTGGCTCCACAAATATCACAACAATGATCTCTGGCTCATTCGAATATTGGTGCAAAACGGAGTGGCTTTGTATGCAACATGGTGGGCTGTGGCTACCTTTTTACACTTGACCGTTGTTTTAGACCATCAAACCCCAATACCCAAGACAGACGCTGCCATAATGGTACTAGTGCTGCTCCAATTGGGACTCATAGGATGGTTTGTCATAGAGAACTGGTACCTGGATAAGCACGTGCGCTACATCCTCACAGTGTACCCTGTGGTGATCCTGGTGTTGGCAGCGAGTGTGGCCAATCCAGCCACGCCCGGTACCCACATAGACATCATGTCTGCCGTCATCTTGGCCATAACCAGTGTCATATTTATTGTACGCATCATCATGGTGTTATGGAAGCACAAGCATCAACCACTTTACGGAGAAGAGGAGCTCAGGTCACCGGTGGACATTGCCAGGACACAGAAGCTCATCTTCATGTGAGGGGAGACAGCTGCTGTGGATATATGTAGGCCCCTGTTGTTTTCCTTAACATTTAATGGCTGAGACCGATGTGACCAAATCCTCCCTATGTCCACAGCACATGTCGATGGAGATTTGGTACTTCGCTACAGGCTTTCCACGTGATGGGTGGGGCCTCTGCACTAGCCAATCCAATGCTAATGTCTTTCTAAGCTAATTAAACCATATCAATTACTGTGTGTCAAAACAATGAACCGAAATGCTCTCATGCTGTCAACACTAAAGCGATATTAATATGATcatgtttttattgttttgtcCATCTTTTAGTACCACCACGTTGTTTTTGTACCCTATTCTTGTCTACCTTTGTGTTTCTACCTTCTCTTTGAACTTCTTTGGTCCTAGGGATTCCCACAGTGAAAAAGCTGAAATTCACTACATTCCTTCaacagaaatggtttgctcagtgggaaatgaatatccaactagtcagtgacaactgtgtggagtttggaATAACTATGTGAGCGTATTGCAGTATCGCAGGCACtgtgtcctgggatttcctatgatcttctatgtagaataATCCCTTAACATTCTAACGACTCTTGTGTAGCTTGTGAGTGGCATAGAGCAAAATGCATATGCGCGTTCGCGAGCGTCATAGTGGGGTCTTAATAGTTTGCAGCTCATTCGGACTTTGCAGACATTTTTGTGAGAAGGGTCGTTTTCCTGGATCCgcccttgtctcacaaacactgctctagttcaACCCCGTCAATCAGGCTAATGTTTGTTGTCACCGATGCAGAAGAAATAGACAAATCCAATGCAAAACTCCAGAAGTCtgtagctcaaacacacacaatattTAAGAGGGGTTGGAAGCACTAAATCACGCCGGGGTGACCATTGGAATCAAAGTTGTGCTATATTGTAAAGCACTTTGGACTGCGCTTGTGCATGGGCATAAACAAATAAAGGTTTTTATTATACTTATTATTAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1460984 lncRNA upstream 26930 30302672 ~ 30302880 (+) True G1279348
TU1460109 lncRNA upstream 215574 30112319 ~ 30114236 (+) True G1278514
TU1460060 lncRNA upstream 259817 30056501 ~ 30069993 (+) True G1278468
TU1460064 lncRNA upstream 269841 30059551 ~ 30059969 (+) True G1278471
TU1459959 lncRNA upstream 348515 29939096 ~ 29981295 (+) True G1278372
TU1461020 lncRNA downstream 4926 30350492 ~ 30352896 (+) True G1279379
TU1461036 lncRNA downstream 28461 30374027 ~ 30374269 (+) True G1279395
TU1461045 lncRNA downstream 41311 30386877 ~ 30387089 (+) True G1279404
TU1461102 lncRNA downstream 49647 30395213 ~ 30395447 (+) True G1279449
TU1461113 lncRNA downstream 65800 30411366 ~ 30411598 (+) True G1279459
XM_021563014.2 mRNA upstream 353724 29969944 ~ 29976086 (+) True tgif1
XM_021563008.2 mRNA upstream 633859 29689717 ~ 29695951 (+) True LOC110489968
XM_021563004.2 mRNA upstream 664889 29657968 ~ 29664921 (+) True ackr4b
XM_021563000.2 mRNA upstream 696991 29604655 ~ 29632819 (+) False si:dkey-12l12.1
XM_021563020.2 mRNA downstream 50251 30395817 ~ 30416375 (+) False htr5ab
XM_021563021.2 mRNA downstream 50251 30395817 ~ 30416375 (+) False htr5ab
XM_021563023.2 mRNA downstream 136451 30482017 ~ 30496207 (+) True insig1
XM_021563022.2 mRNA downstream 172430 30517996 ~ 30521339 (+) True en2a
XR_005036352.1 mRNA downstream 187530 30533096 ~ 30533257 (+) True LOC118938958
TU1460985 other upstream 26391 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 1514000 28815366 ~ 28815810 (+) True G1277279
TU1458658 other upstream 1705592 28574316 ~ 28624218 (+) False G1277159
TU1458659 other upstream 1705592 28574316 ~ 28624218 (+) True G1277159
TU1458201 other upstream 2073404 28190186 ~ 28256406 (+) True G1276733
TU1461105 other downstream 50301 30395867 ~ 30408017 (+) False htr5ab
TU1461526 other downstream 598605 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 1650601 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 2341992 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 3766241 34111807 ~ 34112271 (+) True G1284354

Expression Profile